KEGG   Pyrus x bretschneideri (Chinese white pear): 103946393
Entry
103946393         CDS       T03446                                 
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-3 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
pxb  Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03022  Basal transcription factors
pxb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pxb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103946393
  09124 Replication and repair
   03420 Nucleotide excision repair
    103946393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pxb03021]
    103946393
   03400 DNA repair and recombination proteins [BR:pxb03400]
    103946393
Transcription machinery [BR:pxb03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     103946393
DNA repair and recombination proteins [BR:pxb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     103946393
SSDB
Motif
Pfam: BSD PH_TFIIH NUDIX_2
Other DBs
NCBI-GeneID: 103946393
NCBI-ProteinID: XP_009355364
Position
Unknown
AA seq 600 aa
MSSSSSSSSRRVVKRAQYKDAARLKNPGIPGVLTMVEDKFVFKPNDPTSTQTLDVEFRHI
KGHKNTKEGSKQAPLLNLSSSREVKSYIFEFQSFPDLHECRDFVGNALSKAAEAAKTAPK
KDGVTLPDEQLSAAEMELRMKLLQEDSELQNLHMQFVISGVLTESEFWATRKKLLDGDSR
TKPKQRVGFKNSMSLDTKPTSDGRMNKVTFNFTPEIKYQIFALKPAVHQAFLELVPSKMT
AKDFWTKYFRAEFLHSTKNAAAIAAEAAEDEELAIFLKEDEILAREARQKIRRVDPTLDM
EADQGDDYTHLPDHGIFRDGGKDITELQNEQYRRTLSQDLNRQGAVVLQGRTVDGDLEDP
NNVAEALMRSRQEPDESAVQERLDRIARMNEIDDLREPHDHPVAQLCIKDPRDYFDTQQA
NALKALDESRIGTEQKKCSMTTEEAYGSLKESISKIKSIGLKNSTVAPEIALMVLNGLTQ
NISSTKYQLGKNPREGILDSLPNKMKEELLHHSMSIQELLRHFWSTYPITTAYLSTKVGK
LKDAMSQIYRQLEEIKESDFRHQVSLLVRPMHQALDAAFQHYESNLQKRAATATMPNGNA
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgtcttcttcatcatcctcgtcgtcgaggcgagtggtgaagcgtgcacaatacaaggat
gcggcaagattaaagaaccctggcattcccggcgttttaactatggttgaggacaagttt
gtgttcaagccaaacgatcccacgtctacccaaacccttgatgtggagtttagacatatt
aaaggtcacaaaaacaccaaggagggatccaagcaagcacctttgcttaatctcagcagc
agtcgtgaggttaaaagttacatttttgagtttcaaagttttcccgatcttcatgaatgc
cgagattttgtaggcaatgccctatctaaggctgcagaagctgcaaaaactgctcctaag
aaagatggagttacattgcctgatgaacaactcagtgcagcagaaatggagctccgtatg
aagctactgcaagaagacagtgaactgcagaaccttcatatgcagtttgtaatcagtggt
gttttgacagaatctgagttctgggcaactaggaagaagttgcttgatggagatagccgt
acaaagccaaaacaacgggttggttttaaaaattcaatgagtttggacaccaaacctaca
agtgacggtcggatgaacaaggttacgtttaatttcactccagagattaaatatcagatc
tttgctctcaaaccagctgttcaccaggcatttcttgaactagtgcccagtaagatgaca
gcaaaagacttctggacaaaatatttcagagctgaattccttcacagtaccaagaatgct
gctgcaattgcggcagaagctgctgaggatgaggaactggcaatttttttaaaggaggat
gaaatattggcaagggaagctcgtcagaagattcgacgggttgatccaactttggatatg
gaagctgaccaaggggatgattatacacatcttcctgatcatgggatctttcgtgatggt
ggcaaggacatcactgaactacagaatgagcaatacaggaggactttatcacaagacctt
aacaggcaaggggctgttgttcttcaaggaagaactgttgatggggatttagaagatcca
aataatgttgcagaagcacttatgcggtcaagacaggagcctgatgagagtgctgtgcag
gagagacttgataggattgctcggatgaatgagatagatgaccttcgagaacctcacgat
catcctgttgctcaattatgtattaaggatcctcgagactactttgacacgcaacaagct
aatgcacttaaagctttggatgaatcacgaataggaactgaacaaaaaaaatgcagcatg
accactgaggaagcatatggctccttgaaggagtctatatctaaaattaagagcattgga
ttgaaaaattccacagttgcaccagaaattgctcttatggttcttaatggactgactcag
aatatttctagtaccaagtatcaactcggaaagaatcctcgggagggtattctggacagt
ttgccaaacaaaatgaaagaggaactgctgcatcattcgatgtccattcaagaattactg
aggcatttttggtctacatatccaattaccacagcttatctttctacaaaggtaggcaaa
ctgaaggatgccatgtcacaaatctatcgacagctagaggagataaaggaatcagacttc
cggcaccaggtttctctccttgttcggccaatgcatcaggcacttgatgcggcttttcaa
cattatgaatcgaacttacagaaaagagctgcaactgcaacgatgccgaatggaaatgcg
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (11)   
   RefSeq(nuc) (9)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

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