KEGG   Pseudomonas yamanorum: AK972_0245
Entry
AK972_0245        CDS       T05821                                 
Name
(GenBank) Choline dehydrogenase
  KO
K00108  choline dehydrogenase [EC:1.1.99.1]
Organism
pym  Pseudomonas yamanorum
Pathway
pym00260  Glycine, serine and threonine metabolism
pym01100  Metabolic pathways
Module
pym_M00555  Betaine biosynthesis, choline => betaine
Brite
KEGG Orthology (KO) [BR:pym00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    AK972_0245
Enzymes [BR:pym01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.99  With unknown physiological acceptors
    1.1.99.1  choline dehydrogenase
     AK972_0245
SSDB
Motif
Pfam: GMC_oxred_N GMC_oxred_C FAD_binding_2 DAO NAD_binding_8 TrkA_N Pyr_redox_2 Lycopene_cycl Thi4 FAD_binding_3
Other DBs
NCBI-ProteinID: AMW81045
Position
complement(247177..248880)
AA seq 567 aa
MSQEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGR
RYNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDNWSKLPGLEDWTY
LDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNG
YQQEGFGPMDRTVTPNGRRASTARGYLDTAKKRSTLTIVTHALTDKVLFEGKRAVGVRYL
IGAAEERVEARARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQD
HLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRTREDFDWP
NIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRVQLKSKNPREYPSILFNYMSTE
QDWQEFRDGIRLTREIMQQPALDQYRGREISPGIDVQTDEQLDKFIREHAETAFHPSCSC
KMGTDEMAVVDAEGRVHGMQGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRKPLP
RSTADYYVAGDAPVRGKPMREVGPTAQ
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgtcccaagaatacgactacatcattgtgggtgccggctccgccggtaacaccctggcg
acccgtctgaccgaagacgaaggcgtcaccgtcctgttgctggaagctggcggcccggac
taccgtcttgatttccgtacccagatgccagccgccctggcgttcccgctgcaaggccgc
cgctacaactgggcctacgaaaccgatccagagccacacatggacggtcgccggatggaa
tgcggccgcggcaaaggcctcggcggttcctcgttgatcaatggcatgtgctacatccgc
ggcaacgcgatggactacgacaactggtcgaaactgccgggcctggaagactggacctac
ctggactgcctgccgtattttcgtaaagccgaaacccgcgacatcggcccgaacgactac
cacggtggcgacggcccggtcagcgtgaccacgccaaaggccggcaacaacccgctgttc
cacgcgatggttgaagcaggcgtacaggccggttacccacgcaccgaagacttgaacggc
taccagcaggaaggcttcggcccgatggaccgtaccgtgacgccaaacggtcgtcgcgcc
agtaccgctcgcggttacctggacacggccaagaagcgctcgacgctgaccatcgtcacc
cacgccctgaccgacaaagtcctgttcgaaggcaagcgcgccgttggcgttcgctacctg
atcggtgctgccgaagaacgcgttgaagcccgtgcccgcaaggaagtcctggtgtgcagc
ggcgcaatcgcttcgccgcaactgctgcaacgctccggtgttggcccggcgaaactgctg
gaaagcctcgacattccggtggtccacgacctgcctggcgtcggcgaaaacctgcaggat
caccttgagctgtacctgcaatacgcgtgcacccaaccggtctcgctgtacccgtcgctg
ctctggtacaaccagccggccattggtgccgagtggctgttcaacggcaccggcatcggc
gccagcaaccagttcgaagcgggcggtttcatccgtacccgtgaagacttcgattggccg
aacatccagtaccacttcctgccggtagcgattaactacaacggcagcaacggtgtgaaa
gagcacggtttccaggcgcacatgggctccatgcgttcgccgagccgcggtcgcgtgcag
ttgaagtcgaagaacccacgggaatacccgagcatcctcttcaactacatgtctaccgaa
caggactggcaggaattccgcgacggcatccgcctgacccgtgaaatcatgcaacagccg
gcactcgaccaataccgtggccgcgaaatcagcccgggcatcgacgtacagaccgacgag
caactggataaatttatccgcgagcacgccgagactgcgttccacccgtcctgctcgtgc
aagatgggcaccgacgagatggccgtggttgacgccgaaggccgtgtgcatggcatgcag
ggtctgcgcgtggttgacgcctcgatcatgccgatcatcaccaccggcaacctgaacgcg
ccgacgatcatgatcgccgagaaaatcgccgacaagatccgtggccgcaagccactgccg
cgcagcactgcggattactacgtggcaggcgatgcgccggtgcgtggcaagccgatgcgt
gaagtaggtcctactgcgcagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (10)   
   Pfam (10)   
All databases (24)   

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