KEGG   Pseudomonas yamanorum: AK972_4543
Entry
AK972_4543        CDS       T05821                                 
Name
(GenBank) Urea carboxylase
  KO
K01941  urea carboxylase [EC:6.3.4.6]
Organism
pym  Pseudomonas yamanorum
Pathway
pym00220  Arginine biosynthesis
pym00791  Atrazine degradation
pym01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:pym00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00220 Arginine biosynthesis
    AK972_4543
  09111 Xenobiotics biodegradation and metabolism
   00791 Atrazine degradation
    AK972_4543
Enzymes [BR:pym01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.4  Other carbon-nitrogen ligases
    6.3.4.6  urea carboxylase
     AK972_4543
SSDB
Motif
Pfam: CT_A_B CPSase_L_D2 Biotin_carb_N CT_C_D Biotin_carb_C Biotin_lipoyl Dala_Dala_lig_C RimK Biotin_lipoyl_2 HlyD_3 ATP-grasp_3 ATPgrasp_Ter GCV_H
Other DBs
NCBI-ProteinID: AMW85343
Position
5014831..5018592
AA seq 1253 aa
MFEKLLIANRGAIACRILRTLRELSVKGVAVYSEADAASLHIQQADEACSLGEGAAAGTY
LSVEKILATAKACGATAIHPGYGFLSENAAFAEACEAAGIAFVGPTPEQLRVFGLKHTAR
ALAKQHNIPLLEGTELLNSLDAALLAGESVGYPIMLKSTAGGGGIGMRVCNSADELRDCF
EAVKRLGQNNFSDAGVFIEKYIQHARHLEVQVFGDGCGEVIALGVRDCSVQRRNQKVLEE
TPAPNLPDGMADELCHAAITLAKAVNYRSAGTVEFIFDSADGRFYFLEVNTRLQVEHGVT
EQVWGVDLVRWMVQLAAGEMPPLRELELKPNGHAIQARLYAEDPGRDFQPSPGLLTYVDF
PVAEGLRVDTWVEAGCEIPPYFDPMIAKLIAWAPTREQARLDLHQALTSSQLYGVETNRD
YLRQILMAAPFASGQPWTRCLEGLVYHANTFEVLSAGTQTSVQDYPGRLGYWAVGVPPSG
PMDSRALRLGNRLLGNAEGTAALEITMSGPMLRFNCAAVVAVTGADIALRLNDEVVPMNT
ALLVPAGATLSLGTIAGAGARSYLCLRGGLQVPDYLGSKSTFTLGQFGGHGGRALRAGDV
LHLLPLVDVSCGNTLVPEPLAEVRTLRVIYGPHGAPEYFKPEYIETFFATQWEVHFNSSR
TGVRLIGPKPLWARTDGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPDGPSLGGFVCP
VTVIEADLWQLGQLKAGDKIQFTPVDLKTARTLALEWDQVWEPGLPAMQATRSDRQTEAM
LSRASPLPHSIESPVVCDRSHALRGNAAWDAPRPAVDAMTQSVTGCIPTQSVGTISSPVV
LDIGQADTRLVARLAGDTHLLLEIGAPELDLVLRFRAHALMQAFETRALHGVIDLTPGIR
SLQIHYQPEQLPLADLLALITREWHAVCASQNLQVPSRIVHLPLSWDDPACQLAIEKYMT
TVRKDAPWCPSNLEFIRRINDLANLDEVRHTVFDASYLVMGLGDVYLGAPVATPLDPRHR
LVTTKYNPARTWTAENSVGIGGAYLCVYGMEGPGGYQFVGRTLQMWNRYREVAAFDGKPW
LLRFFDQIRFYPVSADELVQIRRDFPLGRFELGIEHSQLNLTDYQAFLAQEAESIGAFRG
QQQRAFNAERERWIASGQAHFDSEELAAPLGEDTPLQANEYSIDSHIAGNLWQVQVSAGE
RVAAGDVLVILESMKMEIPVLAPFAGTVREIPVQPGSGIGAGQRVVVLERDLQ
NT seq 3762 nt   +upstreamnt  +downstreamnt
atgttcgaaaaactgttgatcgccaaccgtggcgccatcgcctgccgcatcctgcgcacc
ctgcgcgagctttcggtcaaaggtgtggcggtgtattccgaagccgatgccgccagcctg
catatccagcaggccgacgaagcctgcagcctgggcgaaggcgcggcggccggcacctat
ttgtcggtggagaaaatactcgccacggccaaagcctgtggcgccacggcgattcatccg
ggctatggctttctctcggaaaacgccgcgttcgccgaagcctgcgaagcagccggtatc
gccttcgtcggcccgacgccggaacagctgcgggtgttcggcctcaagcacaccgcgcgg
gcgttggccaagcagcacaacatcccattgctggaaggcaccgagttgctcaatagcctt
gacgccgcgctgctggccggcgaaagcgtgggctatccgatcatgctcaaaagcacagcg
ggcggcggcggtatcggcatgcgcgtgtgcaacagcgccgatgaattgcgcgactgtttc
gaggcagtcaaacgcctcggtcagaataatttcagcgacgccggtgtgtttatcgaaaaa
tacatccagcacgcccgccacctggaagtgcaggtgtttggtgatgggtgtggcgaggtg
attgccctcggtgtgcgcgactgttcagtgcagcggcgcaaccaaaaagtgctcgaggaa
accccggcgccgaacctgcccgacgggatggcggatgagctgtgccacgccgcaatcacc
ctggccaaggccgtgaattaccgcagcgccggcaccgtggaatttatctttgatagcgcc
gatggccgcttctattttctggaagtgaacacccggttgcaggtggaacatggcgtcacc
gagcaagtgtggggcgtggacctggtgcgctggatggtgcaactggccgccggagaaatg
ccgccgctgcgggagctggaactgaagccaaacggccacgcgattcaggcacgcctgtac
gccgaagatccgggccgggattttcagccaagcccggggcttttgacgtatgtggatttc
ccggtcgctgaaggcctgcgcgtcgacacctgggtggaggccggttgcgagatcccgccc
tacttcgacccgatgatcgccaagctcatcgcttgggcaccgacccgcgaacaggcgcgg
ctcgatctgcatcaagccctgaccagtagccagctgtacggcgtggaaaccaaccgcgat
tacctgcggcagattctgatggccgcaccgttcgccagcggccagccgtggacgcgctgc
cttgaaggtttggtgtaccacgccaacacgttcgaagtgctgagcgccgggacccaaacc
agtgtccaggactatccggggcgcctcggttactgggccgttggcgtgccgccgtcgggg
ccgatggacagccgcgcattgcgtctgggtaaccgcctgctgggcaatgccgagggtact
gccgcactggaaatcaccatgagcgggccaatgctgcgcttcaattgcgcggcagtggtg
gcggtgaccggggcggacattgcgctgcggttgaatgatgaagtggtgccaatgaacact
gcgctgttggtgccggcgggtgcgaccttgagcctgggcaccatcgccggggccggtgcg
cgcagctacctttgcctgcgcggcgggctgcaggttccggattatctgggcagcaaaagt
accttcacgttaggacagtttggtgggcatggcggacgggctctgcgagcgggtgacgtg
ttgcacttgctgccgttggtagacgtcagttgcggcaacacgttagtgcctgaaccgctc
gccgaagtgcgaaccctgcgggtgatctacggccctcacggcgcgccggaatacttcaag
cctgagtacatcgagacgttctttgccacccaatgggaagtgcatttcaactccagccgt
accggtgtgaggttgatcgggccgaagccattgtgggcgcgtaccgatgggggtgaggcg
ggactgcatccgtccaacattcacgacaatccttatgccatcggtgcggtggattttacc
ggagacatgccggtgatcctcggccccgacggcccgagcctgggcggttttgtatgcccg
gtgacggtgatcgaggcggacttgtggcagttgggccagctcaaggctggcgacaagatt
cagttcactccagtcgacctaaagaccgcccgcacactcgccttggaatgggatcaggtg
tgggagccgggcttgcccgcgatgcaggcaactcggtccgacaggcaaaccgaggcgatg
ctttcgcgagcaagcccgctcccacattcgattgagtcgcctgtggtgtgtgatcgttcc
cacgctctgcgtgggaatgccgcctgggacgctccgcgtcccgctgtcgacgcaatgacg
cagagcgtcacaggatgcattcccacgcagagcgtgggaacgatcagttcgcctgttgtt
ctggacatcggccaggccgacacgcgcctggtcgcccgcctcgccggcgacacccacctg
ctcctggaaatcggcgcccctgaactcgacctggtgctgcgctttcgcgcccacgccctg
atgcaagccttcgaaacccgagccctgcacggcgtcatcgacctgacacccggcatccgt
tccctgcaaatccactaccagcccgaacaactgcccctcgccgacctcctggcgttgatc
acccgcgaatggcacgccgtctgcgccagccaaaacctgcaagtcccgtcgcgcatcgtc
cacctgccactctcctgggacgatcctgcctgccaactggccatcgaaaaatacatgacc
accgtgcgcaaggatgccccgtggtgcccgagcaatctggagttcatccgccgcatcaac
gacctggccaacctcgacgaagtgcgccacaccgtattcgacgcgagctacctggtgatg
ggcctgggcgacgtctacctcggcgcgcccgtggccacgccgctggacccgcgccaccgc
ctggtcaccaccaagtacaacccggcacgcacctggaccgccgaaaactccgtgggcatc
ggtggcgcctacctgtgcgtgtacggcatggaaggccccggcggttatcagttcgtcggg
cgcaccttgcagatgtggaaccgctaccgggaagtcgcggcgttcgatggcaaaccgtgg
ttgctgcgcttcttcgaccagatccgcttttacccggtgagcgccgatgagctggtgcag
atacgccgggattttccccttgggcggtttgaactgggcatcgaacacagccagttgaac
ctgacggactaccaggcctttctcgcgcaggaagccgagagcattggtgcgtttcgcggg
caacaacagcgcgcgttcaacgccgaacgcgaacgctggatcgccagcggccaggcgcat
ttcgacagtgaggaactcgcggcgccattgggcgaagacacgccgttgcaggccaacgaa
tacagcatcgacagccacatcgcgggcaatctctggcaagtgcaggtgagcgcgggtgaa
cgcgtggcggcgggtgatgtgctggtgatcctggagtcgatgaaaatggaaatcccggta
ctcgcgccgttcgccggcaccgtgcgggaaattcccgtgcaaccaggcagcggcattggc
gccgggcaacgggtggtcgtgctggagcgtgatttgcaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (13)   
   Pfam (13)   
All databases (29)   

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