KEGG   Pseudomonas yamanorum: AK972_4785
Entry
AK972_4785        CDS       T05821                                 
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pym  Pseudomonas yamanorum
Pathway
pym03410  Base excision repair
pym03430  Mismatch repair
pym03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pym00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AK972_4785
   03430 Mismatch repair
    AK972_4785
   03440 Homologous recombination
    AK972_4785
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pym03400]
    AK972_4785
DNA repair and recombination proteins [BR:pym03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     AK972_4785
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     AK972_4785
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AK972_4785
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB
Other DBs
NCBI-ProteinID: AMW85585
Position
complement(5280519..5282228)
AA seq 569 aa
MRIDPRPLPAVLPFLGELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLL
VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV
ALQRQPQLLITVDNGISSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEF
PSKALAGVGVIFYVLMALRARLRSLGWYENKPQPNIGELLDLVALGSVADVVPLDANNRI
LVYQGLERIRAGRARPGIKAILEVAKRDHARITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLTSDFAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDPEWHQG
VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPTLIAKYGG
HAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRNA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGIDREIWPNPTIR
WVELAYKLDVNEFRGQETVQLMIAHIEPR
NT seq 1710 nt   +upstreamnt  +downstreamnt
atgcgtattgatcctcgcccgttgcccgccgtcctgccattcctcggtgaattgccgccg
ttgttgacccgtctctacgccgcacgcggggtgcaatcggaagccgagctggataaaagc
ctggcgcggctgattccgtatcagcagctcaagggcatcgatgccgccgtggacctgctg
gtgacggccctggaacagcgccagcgtatcctcatcgtgggtgacttcgacgccgacggc
gccaccgccagcaccgtgggcaccctgggcctgcgtttgttgggtgccgcccacgtcgac
tacctggtgcccaaccgtttcgaatacggctacggcctgaccccggaaatcgtcgcggtg
gccctgcagcgccagccacagctgctgatcaccgtggacaatggcatctccagcgtcgaa
ggcgtggcggcggcgaaagcggcggggctcaaggtactggttaccgaccaccacttgccc
ggcgatgaactgccggcggcggatgcgatcgtcaacccgaaccagccgggctgtgagttc
cccagcaaggcgttggccggtgtaggcgtgatcttctacgtgctgatggccctgcgcgcg
cgtttgcgcagccttggctggtacgagaacaagccgcagccgaacatcggtgaactgctg
gacctggtggccctgggcagcgtggccgacgtggtcccgctggacgccaacaaccgcatc
ctggtctatcaaggcctggagcgtattcgtgccggtcgcgctcgcccggggatcaaggcg
atcctcgaagtggccaagcgcgatcacgcgcgcatcacctccaccgacctcgggtttatc
ctcggcccgcgcctgaacgccgccggtcgcctggatgacatgagcctgggcatcgaatgc
ctgctcacctcggatttcgccgccgcccgggaaatggccgcgcagctggacggcatgaac
caggaccgcaaatccatcgagcaaggcatgcagcgtgaggccctggcgcagctcaaggac
ttgccggtggaatcgatgccgtatggcttgtgcctgttcgacccggaatggcaccagggt
gtgatcggcatcctcgcctcacggatgaaagagcgctacttccgcccgaccatcgccttt
gccgatgccggggatggcctgctcaagggctccgggcgttccgtgccgggctttcacatc
cgtgacgcgctggccgtggtggccagccagcacccaacgctgatcgccaagtacggcggc
cacgccatggcggcggggctgacattgcccgaggccaacttcccactgttcgccgaagcc
tttgacgccgaagtgcgccgccaactgcgtgaagaagacctgacgggccgattgctgtcc
gacggcaccctggcggttgaagagtttcacctggaactggcccgcgccctgcgcaatgcc
gggccgtgggggcagcatttccccgagcctttgtttcacggggtgttccaactggtggag
cagcgcgtcgtcggcgagcggcacctgaaagtggtgctcaaaagcgaatgcggttcggtg
aaactcgatggcatcgccttcggcatcgaccgcgagatctggcccaatccgaccattcgc
tgggtggaactggcctacaagctcgacgtgaacgagttccgtggccaggaaaccgtgcaa
ctgatgattgcccatatcgagccacgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

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