KEGG T05821: AK972

Pseudomonas yamanorum: AK972_6087

Entry

AK972_6087        CDS       T05821

Name

(GenBank) Exodeoxyribonuclease III

K01142

exodeoxyribonuclease III [EC:3.1.11.2]

Organism

pym Pseudomonas yamanorum

Pathway

pym03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:pym00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AK972_6087
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pym03400]
    AK972_6087
Enzymes [BR:pym01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     AK972_6087
DNA repair and recombination proteins [BR:pym03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     AK972_6087

SSDB

Motif

Pfam:

Exo_endo_phos CbiK

Other DBs

NCBI-ProteinID:

AMW86887

Position

complement(6788299..6789078)

AA seq 259 aa
MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRASAFELDDPAFQLDGYFLYACDA
EVPAQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQNGDEDLN
QKFKLMDDFARYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWMDE
IVGNMGYVDALREVSREGDQYSWWPDNEQAEMLNLGWRFDYQLLTPGLRRFVRSARLPRQ
PRFSQHAPLIVDYDWTLTI

NT seq 780 nt +upstreamnt +downstreamnt
atgcggatcatcagtgtgaacgtcaatggtattcaggctgcagtcgagcgtggtttgctc
agttggctgcaagcccagaatgccgacgtcatctgcctgcaggacacccgcgcctccgcc
tttgaactggacgacccagccttccaactggatggctacttcctttatgcctgtgatgcc
gaagttcccgcccaaggcggcgtggctttgtattcgcggttgcaacccaaggcggtcatc
agcggcctcggcttcgagacagccgaccgctacgggcgctacctgcaagccgatttcgac
aaggtcagcatcgcgaccttgctgcttccatcagggcagaatggcgatgaagacttgaac
cagaagttcaagctaatggacgacttcgcccgttatctggataaacagcggcgcaaacgt
cgcgagtacatttactgtggctcgctgtatgtggcgcaacagaagctggatatcaagaac
tggcgcgacagccagcaatcaccgggcttcctcgcgccggaacgggcctggatggacgag
attgtcggcaatatgggctatgtcgatgccctgcgtgaagtcagccgcgaaggcgaccag
tacagctggtggccggataacgaacaggccgagatgctcaatctcggctggcgttttgac
taccagttgctgacgccaggcctgcgccgcttcgtgcgcagtgcacgcctgccacgccag
ccgcgcttctcgcagcacgcgccgctgatcgtggactacgactggaccttgaccatctaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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