KEGG   Pyrobaculum sp. WP30: PYWP30_01856
Entry
PYWP30_01856      CDS       T04013                                 
Name
(GenBank) Rad3-related DNA helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
pyw  Pyrobaculum sp. WP30
Pathway
pyw03022  Basal transcription factors
pyw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pyw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PYWP30_01856
  09124 Replication and repair
   03420 Nucleotide excision repair
    PYWP30_01856
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pyw03021]
    PYWP30_01856
   03400 DNA repair and recombination proteins [BR:pyw03400]
    PYWP30_01856
Enzymes [BR:pyw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     PYWP30_01856
Transcription machinery [BR:pyw03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PYWP30_01856
DNA repair and recombination proteins [BR:pyw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PYWP30_01856
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII nSTAND3 AAA_25 PhoH Terminase_6N
Other DBs
NCBI-ProteinID: AKT35472
UniProt: A0A0K1E448
Position
complement(1624002..1625762)
AA seq 586 aa
MELFPYRGFRPFQKEVHDAVYRGLLEEKLVLINAPTGLGKTAAVLTAALRYMLDTETSVH
YVVRTRAELEPPVRELSKILNRGVDLDYVVIKSRQDMCCYSSLKKLDYLEFLAECSLLRR
MGRCAYYPPREVQAPLRSVSTYVKFLCASQSCPYEYARQKMSGAKLVISTYYYVFGREHA
DLKGRVVIIDEAHSLFDAVTQLHSIVLSEGDLRAAYKEAKKYGFLDEAAKIYRLLTFIKR
SAGAVDVGDVLGLVADLDLENAIWEITKRKTEEKVNPYTPLLLVKELRDALRGRLRYYAE
VRGEYLAKTLALYPLDPTALIKESLRGVKNVVYISGTLPISIFAESLALPDFVKLDISFS
DFIPRHNYLSVIDVGVTTKFEERTEEMYLRIAERLATAINMSPGGVLAMFPSYDVMKGVR
KYLKISVPHWYEGPQEVDWENLPEKFFIGAVARGRYVEGVEYVKDGKNLLSTVVVVGVPY
PEPSPYLDRRVELLRPRLKERAWSAVYLYHAVVSTRQAIGRLFRSPEDRGVLVFLDRRYA
EPELWNELKDVLTGSLIVSHLEEAAEKTAEFFTSASTASRWPSPRR
NT seq 1761 nt   +upstreamnt  +downstreamnt
gtggaactcttcccctatcgcggctttaggccctttcagaaggaggtgcacgacgcagtc
taccgcgggcttctagaggagaagcttgtgttaatcaacgcgccgaccggtctcggcaag
accgcggcggtgttgacagcagccctacgctacatgctcgatacagaaacgtcggtgcac
tacgtggtgaggactagggcggagctggagccccccgtgagggagctgtcgaagatctta
aaccgaggcgtcgatctggactacgttgttattaagagtcgacaagacatgtgttgctac
tcctcattaaagaaactcgactacctggagtttctggctgagtgtagcctcctaaggaga
atgggaagatgcgcctactaccccccgagggaggttcaggcaccgcttaggtccgtgtct
acgtacgttaaatttctctgtgcctcccagagttgcccctacgaatacgccaggcagaag
atgagcggcgccaagctcgtcatatctacgtactactacgtctttgggagagaacacgca
gatctcaaaggccgcgtggttataattgacgaagcccactcgctgtttgacgccgtgacc
cagctccacagcatcgtcctgtctgaaggcgatctgcgggccgcgtataaagaggcgaag
aaatacggcttccttgacgaagccgccaaaatctaccggcttttgacatttataaagaga
agcgccggcgccgtagacgtgggggatgtcctggggcttgtggcggatctagacctcgaa
aacgccatatgggagatcaccaagagaaaaaccgaggagaaggtcaacccctacaccccc
ctgctcttggttaaagagctacgggacgccctaagaggcaggctgagatactacgcggag
gtaagaggcgagtacttggctaagacgctcgccctctacccactggaccccacagcgctt
attaaggagtcgctgaggggggtcaaaaacgtggtctatatcagcggcaccttgcccata
tcgatattcgccgagagcctcgcccttcccgacttcgtcaagctggacatatcattctca
gacttcatcccccggcacaactacctctccgtaattgacgtgggggtcaccacaaagttc
gaggagaggaccgaagagatgtaccttcggatagccgaacgccttgcaaccgccattaac
atgtcgccaggcggcgtgttggccatgttcccctcctacgacgtcatgaagggggtgcgg
aaatacctcaagatctccgtaccacactggtacgaggggccccaggaggtggattgggaa
aacctaccggaaaaattcttcatcggcgccgtggcgaggggcagatacgtcgaaggcgta
gagtatgtaaaagacggaaaaaacctcctatccacagtcgtggtggtgggagtcccctac
cccgagccctccccctacctcgacagaagggtggagctgctgaggcccaggctgaaggaa
agagcgtggagcgctgtgtacctctaccacgccgtcgtgagcacacgccaggcaataggc
aggctgttcagaagccccgaagacaggggcgtgttggtgtttctcgacagacgctacgcg
gagcctgagctctggaacgagttaaaagacgtgttgacggggtcgctgattgttagccac
ctagaggaggccgcggagaagaccgcggagttcttcacctccgcgtcaacagcctccaga
tggccatcgccacgacgataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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