KEGG   Quercus suber (cork oak): 111996728
Entry
111996728         CDS       T05868                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03082  ATP-dependent chromatin remodeling
qsu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111996728
   03083 Polycomb repressive complex
    111996728
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:qsu03036]
    111996728
Enzymes [BR:qsu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     111996728
Chromosome and associated proteins [BR:qsu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     111996728
   HDAC complexes
    Sin3A-HDAC complex
     111996728
    BRAF-HDAC complex
     111996728
    REST complex
     111996728
    SHIP complex
     111996728
    MiDAC complex
     111996728
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     111996728
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111996728
  Chromatin remodeling factors
   NuRD complex
    111996728
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 111996728
NCBI-ProteinID: XP_023884496
Position
Unknown
AA seq 487 aa
MRSKDKIAYYYDGDVGGVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFSNELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKHQARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKETGEREGKYYAINVPLKDGIDDTSFTRLFKS
IISKVVETYVPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPENEYIKYFGPEYSLRIPNGHIVCTFSEILCYQCI
LLHPYTNLIAESVISKWAHTMYSLSLVSLFFWCVSPLFSLFVEQENLNSKSYLSTIKMQV
FENLRCIQHAPGVQMQEVPPDFYIPDFDEDEQNPDERMDQHTQDKNIQRDDEYYEGDHDN
DQNMEDV
NT seq 1464 nt   +upstreamnt  +downstreamnt
atgcgctccaaggacaagatcgcctactactacgacggggatgtgggtggtgtttacttt
gggccgaaccatccgatgaagccgcaccggctttgtatgacacatcatcttgtactctcc
tatgatcttcacaagaagatggaaatttatcgacctcacaaggcgtatcctgttgagctt
gcacagttccattcggctgattatgttgaatttttgcaccggattacacccgacactcaa
cacttgttctcaaatgaattggctaaatataatctcggagaagattgccctgtctttgaa
aacttgtttgagttttgtcaaatatatgctggtggaacgatagatgctgcacgcagattg
aacaatcaactttgtgacattgccataaattgggccggtgggttacatcatgccaagaag
tgcgaggcatctggattttgttacatcaatgacttggttttggggatcttggagcttctc
aaacatcaagcccgtgttttgtatatagatatagacgtccatcatggggatggtgtagaa
gaagccttttatttcactgacagggtgatgactgttagttttcacaagtatggagatatg
ttttttccaggaactggtgatgttaaggaaacaggagaaagagaaggcaaatattatgcc
atcaatgtcccactcaaggatggaatagatgacactagcttcacccgactttttaagagt
attatttccaaggttgttgaaacatatgttccaggtgcaatagttctccaatgtggggca
gactcgcttgctggggaccgcttgggctgcttcaatctatccattgatgggcatgctgaa
tgtgttaggtttgtgaagaagttcaatttgcccttactggtaactggaggtggaggatat
accaaagagaatgttgctcggtgttgggctgttgaaactggagttcttctggatacagag
cttcccaatgagatcccggaaaatgagtatattaaatattttggtccagaatattcattg
aggattccaaatgggcacatagtatgtactttctcagaaatcttatgttaccagtgcatt
ttacttcatccatacaccaatttgattgctgaatcagttatttccaagtgggcacatact
atgtactctctctccctagtgtctttatttttttggtgtgtttcaccccttttctcccta
tttgttgagcaggagaacttaaatagcaaatcgtacctaagcacaatcaaaatgcaagtc
ttcgaaaatcttcgttgcatccagcatgccccaggagtgcagatgcaagaggttccacct
gacttttatattcctgattttgacgaagatgagcaaaaccctgatgagcgcatggatcag
cacacccaagacaagaacatccagcgtgatgatgaatattatgaaggagaccatgataat
gatcagaacatggaagatgtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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