KEGG   Quercus suber (cork oak): 111998158
Entry
111998158         CDS       T05868                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111998158
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:qsu03019]
    111998158
Enzymes [BR:qsu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     111998158
Messenger RNA biogenesis [BR:qsu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111998158
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111998158
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2
Other DBs
NCBI-GeneID: 111998158
NCBI-ProteinID: XP_023886026
Position
Unknown
AA seq 600 aa
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPDSSPIEGHFLRYKWYRIQSDK
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
SEEEELFGRFNSSGSAASLSGSASATSLTNGSTPLYPAAVTQRSGGETWFEVGRFKTYTP
TADDIGHVLKFECVVVEADTKVPVGQVNTILTSRVIPAPSPSPRRLVPVNGVDVIGHLDS
DGRLSSSGTFTVLSYNILSDVYATNELYSYCPSWALSWPYRRQNLLREIVGYRADIVCLQ
EVQSDHYEEFFAPELDKHGYVGLYKRKTNEVYIGNTNTIDGCATFFRRDRFSHVKKYEVE
FNKAAQSWTDSQLPSAQKKTALNRLFKDNVALIVVLEAKFSNQGADNPGKRQLLCVANTH
VNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPLH
PDLAADPLGILRPNSKLVHQLPLVSAYSSFARMGVGIGLEQQRRRLDPTTNEPLFTNCTR
DFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMPRARR
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgctgagcgtgctgcgcgtgcacctcccttctgatattcccattgtaggctgcgaactc
acgccctacgttctcctccgccgccccgacaagactgtcaccaccgacgatgtccctgat
tcctccccaatcgaaggccatttcttgagatacaagtggtatcgcatacaaagtgataaa
aaagttgctgtctgcagtgtacatccatctgagcaagctacattgcagtgcctaggttgt
gtcaaggccaaaatacctgttgccaaaagttaccattgctctcctaagtgcttctcagat
gcatggcagcatcatcgtgttctacatgaccgtgctgcaagtgctgtaaatgaaaatgga
agtgaagaggaggagttatttggccgcttcaatagctcaggatctgcagctagcttatct
ggttctgcatcagctactagcttgacaaatggttcaacacctttgtatcctgctgctgtt
acacaaaggagtgggggtgaaacttggtttgaagttggtcgctttaaaacatatacacca
actgctgatgatattggtcatgttcttaagttcgaatgtgttgtagtagaggctgataca
aaagtacccgtggggcaagtcaacactatattaacttctcgtgtcattccagctccgtca
cctagcccacgtcgtttagtaccagtaaatggagtagatgtgattggacatctagattcc
gatggccgtctttcatcctcaggaactttcactgtgctctcttacaacattttgtctgat
gtgtatgccacaaatgaactatacagttactgcccctcttgggctctttcttggccctat
cgcagacaaaatttgttaagagaaatagttggctaccgtgcagatattgtttgtcttcag
gaggttcaaagtgatcactatgaggagttttttgctcctgagctggacaaacacggttat
gttggtctatataagagaaagacaaacgaggtttacattggaaatacaaatacaattgat
ggttgtgccacatttttccgtagagacagattttcacatgttaaaaaatatgaggttgaa
tttaacaaggctgcgcagtcttggacagatagtcaattgccaagtgcacagaagaaaact
gctttaaatcgattgtttaaggataatgttgcactgatagtggttctggaagcaaaattc
agtaatcagggagctgataatcctgggaaacgccagcttctttgtgtggcaaatacgcat
gtaaacgttcaccaagatttaaaggatgtaaaactgtggcaggttcatactctcctaaaa
ggattggagaaaatagctgccagtgcagacattccaatgttggtttgtggggactttaat
tcagttcctggaagtgctcctcatgcgcttcttgctatgggaaaggtagatccattgcat
ccagacttggcagcagatcctctgggtatcctgcgtcccaacagcaagctggtgcatcag
ttgccacttgtcagtgcttactcatcctttgcaagaatgggggttggtattggtttggaa
cagcagagaaggaggttggaccccacaacaaatgaacccttatttacaaactgcaccaga
gattttattggaacactagattacatattttacacagcggactctttgacggtggaatcc
ttattggagctcttggatgaggagagcttgaggaaagacacagcacttccttctccagag
tggtcctccgatcatattgcactcttagcggaatttcgctgcatgcctagagctagacgt
tga

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