KEGG   Quercus suber (cork oak): 112005560
Entry
112005560         CDS       T05868                                 
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 34-like
  KO
K10899  ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
Organism
qsu  Quercus suber (cork oak)
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:qsu03400]
    112005560
Enzymes [BR:qsu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     112005560
DNA repair and recombination proteins [BR:qsu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     112005560
SSDB
Motif
Pfam: Helicase_C RecQ_Zn_bind HRDC RQC Glutaredoxin
Other DBs
NCBI-GeneID: 112005560
NCBI-ProteinID: XP_023893604
Position
Unknown
AA seq 536 aa
MDFLIEGFLDFIDSLNLTKRSLGKEHFPKISVVATEATKPAADQPREIPQVPTKPSQDST
NFSLKDLLKSLCHMHEFSLNFVKCTSYLVSNIGRFELKMHVNKQNKIIKNARERQRIWRL
KRVFPSSCCISKKIAKELRERGISADYYHADMDANAREKVHMRWSNNKLQVIVGTVAFGM
GINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSG
LQNLYDIARYCQSKRQCRRSAFFRHFAEPLQDCNGMCDNCAFSSDVKEVDVTRHAQLMVS
LLQDMQENDLRMTMLQLIDKMKIKHKELGSELKREETEQLVIKLILDRILKEEFQHTAYA
TNAYVTLGPFAKQVLHGKKNVKLEISSGEKNTASLKSAKRNLSSSVLEFKLDELRKEVSA
IHGKIFPHSVLSTQQISMISAQKPNSLEQLEKIIGKLKTEKYGSRILEQIEKYRDCVQTD
ELNEGQGSQNRGTKRQKTKKDQTDELNGGRGSQNRGTKRRKTKKDLVVIESSDDEA
NT seq 1611 nt   +upstreamnt  +downstreamnt
atggattttttgatcgagggcttcttggatttcatagattccttgaatttgacaaagaga
agtttaggcaaagaacatttccctaaaatttctgttgtagcaacagaagctaccaaacca
gcagctgaccagcctagagaaattcctcaagttccaactaagccatcccaggatagtact
aatttctctttgaaagatttattgaagtccttatgtcatatgcatgagttctccttaaac
tttgtcaaatgtacaagttatcttgtgagtaacattggacgttttgagctgaagatgcat
gtaaacaaacaaaacaagattataaaaaacgcaagggaaaggcaaagaatatggaggctg
aagcgtgtttttcccagttcatgttgcatatcaaagaagattgcaaaggagctacgagag
agaggaatttcagctgattattatcatgcagatatggatgcaaatgctcgtgagaaagta
catatgcggtggagcaataacaagttgcaagttatcgttggtacagttgcatttggtatg
ggaatcaacaaaccagatgtgaggtttgtcatccatcacagcctgagtaaatcaatggag
acatactatcaggaaagtggccgagctggacgagatggactcccttctgaatgcttactc
tacttcaggcctggtgatgttcctaggcagagttctatggtgttctatgagaattctgga
ttgcagaatctctatgacattgcacgatattgtcagtctaaaagacagtgccgtcggagt
gcctttttccggcattttgctgagccattacaggattgcaatgggatgtgtgacaattgt
gcattctcaagtgacgtgaaggaagtggatgtcactcgtcatgcacaacttatggtttct
ttgctgcaagatatgcaagagaatgatctgagaatgacgatgttacaattgatagacaaa
atgaaaataaagcacaaggaactaggttctgaactgaagagagaggaaacagaacaactt
gtcataaagcttatattagatcgtatattgaaagaagaatttcagcatacagcttatgcc
acaaatgcttacgtaacattagggccatttgccaagcaagtcttacatggaaagaaaaat
gtgaaacttgaaatttctagtggagagaagaatacagctagtctgaaatcagccaaacgc
aatctttcatcctctgttttggagttcaagcttgatgagcttcggaaagaagtgtctgcg
atccatgggaaaatattccctcattctgtcctgtctactcaacaaatcagcatgataagt
gcgcagaagccaaattcattggaacagttggagaaaatcattgggaaattgaagacagag
aagtatggaagtagaattcttgaacaaattgagaagtaccgcgattgtgttcagactgat
gagttaaatgaagggcaaggcagtcaaaatagaggcaccaaacggcagaaaaccaaaaag
gatcagactgatgagttaaatggagggcgaggaagtcaaaatagaggcaccaaacggagg
aaaaccaaaaaggatctcgttgtcattgaaagcagtgatgacgaagcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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