KEGG   Quercus suber (cork oak): 112009567
Entry
112009567         CDS       T05868                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
qsu  Quercus suber (cork oak)
Pathway
qsu03022  Basal transcription factors
qsu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:qsu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112009567
  09124 Replication and repair
   03420 Nucleotide excision repair
    112009567
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:qsu03021]
    112009567
   03400 DNA repair and recombination proteins [BR:qsu03400]
    112009567
Transcription machinery [BR:qsu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     112009567
DNA repair and recombination proteins [BR:qsu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     112009567
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 112009567
NCBI-ProteinID: XP_023897672
Position
Unknown
AA seq 226 aa
MPSAPTKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLSFLNSILLLNQINQIVVI
ATGCNSCDYVYDSSLSTNPGIENGKLPALCSELLKKLEDFVTRDEQLNKQQSQSQSQSLP
PTTTSSLLSGSLSMALCYTQRVFRSGPLHPHPRILCVQGSSDGPEQYVAIMNSIFSAQRS
MVPIDSCYIGSNNSAFLQQASYITGGVYQKPQQLDGLFQYLSVGCV
NT seq 681 nt   +upstreamnt  +downstreamnt
atgccctccgctcctacaaagctctacgcagatgacgtcagcctgctagtggttctattg
gacacaaaccctttcttctggagcacttcctctctccctttctccaagttcctctctcac
gtgctttcgtttttgaactcgattctgcttctcaaccaaatcaaccaaatcgtagtgatc
gctacgggatgcaattcctgcgactacgtctacgattcctctttgtcgaccaaccccggc
atcgagaacggaaagctcccggctctttgctccgagttgttgaagaaattggaagacttt
gtcaccagggatgagcaattgaataagcaacagtcacagtcacagtcacagtctctacca
cccaccactacatcttcgctgctatcaggctccttgtccatggctctttgttatacacag
agagtttttcgttcaggaccactccatccacatcctcgaattttatgtgtgcagggatcg
tcagatgggccagaacaatatgttgcaatcatgaattcaatattctcagcacagcgttca
atggttccaatagattcttgttatataggttctaacaattctgccttcctacagcaggct
tcttacataactggtggtgtgtatcagaaaccccagcaactggatgggctctttcaatat
ctctcggtaggttgtgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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