KEGG   Rhodoferax antarcticus: RA876_05875
Entry
RA876_05875       CDS       T04655                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
rac  Rhodoferax antarcticus
Pathway
rac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RA876_05875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rac03019]
    RA876_05875
   03016 Transfer RNA biogenesis [BR:rac03016]
    RA876_05875
Enzymes [BR:rac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     RA876_05875
Messenger RNA biogenesis [BR:rac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RA876_05875
Transfer RNA biogenesis [BR:rac03016]
 Prokaryotic type
  tRNA degradation factors
   RA876_05875
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PNPase S1 KH_1 KH_2 KhpA-B_KH DNA_pol3_a_NI S1_2
Other DBs
NCBI-ProteinID: APW45979
Position
1205799..1207922
AA seq 707 aa
MTMFKKVSKTFQWGQNTVTMETGEIARQASGAVKLDMDGTVVLATVVARTEGKAGQDFFP
LTVDYLEKAYAAGKIPGSFFKREGRPSEFETLTSRLIDRPIRPLFPEGFFNEVHVVVHTL
SLNPEVDADIAAMIAVSAALSISGVPFSGPIGAARVGYINGEYVLNPGQTLRKSSQMELV
VAGTESAVLMVESEADQLSEEIMLGAVVFGHTQGAIAINAIHDLVRDAGKPVWDWKPAAK
DEALIAKIDVLAKDKLVAAYQIRNKQARTQACRATYAEVMAALKAEGVAFDSVAIEGLLF
EIEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRTHGSALFTRGETQALVVTTLGT
ERDAQRIDALSGDYEDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAVLPSK
EDFPYTMRVVSEVTESNGSSSMASVCGGCLSLMDAGVPLKAHVAGIAMGLIKDDNRFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMT
EAMAEAKTEVSNFAPRLFTMKINPEKIRDVIGKGGSVIRALTEETGTQINIDEDGTITIA
SSDPAKAEEAKRRIEQITAEVEIGKIYEGPVVKILDFGALINLLPGKDGLLHISQIAHER
VEKVTDYLSEGQIVKVKVMETDEKGRVKLSMKALLERPVQGGNDNRA
NT seq 2124 nt   +upstreamnt  +downstreamnt
atgacaatgttcaaaaaagttagcaaaaccttccaatggggtcaaaacacagtcaccatg
gaaactggcgaaatcgcccgtcaagccagcggcgcagtgaagcttgacatggacggcact
gtggtgttggctaccgtggtggccaggaccgaaggcaaagccggtcaggatttctttcca
ctgaccgttgattaccttgaaaaagcctacgctgcaggcaagattccgggcagcttcttc
aagcgtgaaggccgccccagcgagtttgaaacactcaccagccgcctgattgaccgccca
atacgcccattgtttcccgaaggcttcttcaacgaagtgcatgtggtggtgcacaccctg
tcgctcaaccctgaagtcgacgccgacattgccgccatgattgcggtgagcgcagcgctg
tcgatcagcggcgtgccgttcagcggcccgattggtgctgcccgcgtgggttacatcaac
ggcgaatatgtgcttaacccgggccaaaccctgcgcaaatccagccagatggaattggtg
gtggcaggtaccgaatctgccgtactgatggtcgagtctgaggctgaccagttgtccgaa
gaaatcatgctcggcgcggtggtgtttggccacacccaaggtgcgattgccatcaacgcg
atccacgacctcgtgcgtgatgctggcaagccggtgtgggactggaagcccgctgccaaa
gacgaagcgctgatcgccaagatcgacgtactggccaaggacaaactggtggccgcctac
caaatccgcaataagcaagcccgcacccaagcctgccgcgcgacctacgctgaagtcatg
gccgcactgaaggccgaaggcgtggcgtttgattcggtggctatcgaaggcctgctgttt
gaaattgaagcgaagattgttcgtggccagattctggcgggcgagccgcgtattgacggt
cgtgacacacgcaccgtgcgtgctatcgaaatccgcaacggcgtgctgccgcgcacccac
ggttccgccctgttcacgcggggtgaaacccaggcgctggtggtgaccacgctgggtacc
gagcgtgatgcccagcgcattgacgccttgagcggcgactacgaagaccgcttcatgctg
cactacaacatgcctccctttgccaccggcgaaaccggccgtgtgggcacgcccaagcgc
cgcgaaattggtcacggccgtctggccaagcgcgcgctgattgccgtgttgccgagcaag
gaagacttcccctacaccatgcgtgtggtgtctgaagtgaccgaatccaacggttcgtcg
agcatggcctcggtgtgcggcggctgcctgagtctgatggacgctggcgtgcctttgaag
gcgcatgtggccggcattgccatgggcctgatcaaggacgacaaccgctttgccgtgctg
actgacatcctgggtgatgaagaccacctcggcgacatggacttcaaggtggccggtacc
accaacggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaagtcgctttggcacaagccaaagaagcgcgtatgcatatcctgggcaagatgact
gaagccatggcagaggccaagaccgaagtctccaatttcgcgccgcgtctgttcaccatg
aagatcaacccggaaaagatccgcgacgtgatcggcaagggcggctcggtgatccgtgcg
ctgaccgaagaaaccggcacccagatcaatatcgacgaagacggcaccatcaccatcgca
tcaagtgacccggccaaagccgaagaagccaagcgccgcattgagcagatcaccgctgaa
gttgaaatcggcaagatttatgaaggcccggtggtgaagattttggacttcggcgcgctg
atcaacctgctgcccggcaaagatggcctgctgcacatcagccagatcgcccatgaacgc
gtcgagaaggtgactgactatttgtcagaaggccagatcgttaaggtcaaggtcatggaa
accgacgaaaaaggccgtgtcaagctgtcgatgaaagccttgctggagcgcccagtccaa
ggcggcaacgataatcgggcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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