KEGG   Rhodoferax antarcticus: RA876_11585
Entry
RA876_11585       CDS       T04655                                 
Name
(GenBank) hypothetical protein
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
rac  Rhodoferax antarcticus
Pathway
rac03420  Nucleotide excision repair
rac03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RA876_11585
   03430 Mismatch repair
    RA876_11585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rac03400]
    RA876_11585
Enzymes [BR:rac01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RA876_11585
DNA repair and recombination proteins [BR:rac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RA876_11585
   MMR (mismatch excision repair)
    Other MMR factors
     RA876_11585
SSDB
Motif
Pfam: UvrD_C UvrD-helicase UvrD_C_2 AAA_19 Viral_helicase1
Other DBs
NCBI-ProteinID: APW46894
Position
2402960..2405044
AA seq 694 aa
MDTHGPWATSTRGQMEAGGITRRQAASPTNFSNEHEDAFMTMATQILKTDEQKAICDSEH
PLLVVEANAGAAKTTTAAMKINQLIAEGVDPGRIVALSFSAPGVQAYRDAFKRIGMSLAA
AKAVQVGTFEDFCASWLMRLEGLEVKRPTRPEEVRAFVLAAIPGARVWASDRFNLELSIE
GSGELAVEGLLYEFGEIKGSMQLLRQGEYFQISPECAVEIGRSFTTLAIYRAYEKQRCVS
VDADSEQTKFRYSGDATYDLARILEADDPCFTWETNPLRLGLQAVFLDEMHDTNWAMFTV
LKQLLQFNQGASFLGVGDRDQVIHAQHGADAYFMGEGFDTYIGKPERLPLTESYRFGGAI
SQPLAGFSAKNYAANRAHISRVEVKKTGSALDVLALINHAMTARPGLQPDSPKSQLAVLL
RNPSASVELEHALRERCIRYQTIDFTTYLERSEVLFVRLLLGWAVGLQEPFRTGIDALAK
RATWAFLSANASVTAEEQTEKSLKVNGASLKHFLEYMLPDALGINDPRATRYLYTSVDDA
VRRRICKAIDLAASDDIHCLAGVFDFLDIGNLARRVYVKEQEAEDARASVTGLLKASEKY
VSISQFMRSLMAHDYEARAARFAGDRIILSSIEAVKGLEFEHVIVPDVNATDFDGDSRDE
RNLFYVAASRAKTMLTLTYRAGHPSSYLRHFESN
NT seq 2085 nt   +upstreamnt  +downstreamnt
atggatacccatggtccatgggcgaccagcacaagggggcaaatggaagctggcggtatc
acacggcggcaagcagcgagcccaacaaacttctccaacgaacacgaagatgcatttatg
acaatggcgacacaaattctcaaaacagacgagcaaaaggcgatttgcgattccgagcac
ccacttcttgttgtcgaggccaatgcaggtgcggcaaagaccaccaccgcagcgatgaaa
atcaatcaactcattgcagaaggcgtcgatccaggcaggatcgttgccttgtcgttcagc
gcgccaggggtccaggcctaccgagatgcattcaaaaggattggcatgtcgctggcagcg
gccaaagcggtacaggttgggacattcgaggatttctgtgcctcatggttaatgcggcta
gagggccttgaagtcaagcggccaacaaggcctgaggaagtgcgtgcatttgtgcttgcc
gccatccctggcgcaagagtttgggcgtcagaccgattcaatttggaactgtccattgaa
gggagtggcgaattggccgtggagggcttgctttatgagtttggcgagatcaagggttcc
atgcagctgctgcgtcaaggcgagtactttcaaatctcgcctgaatgtgccgttgaaatt
ggtcgcagtttcacaaccttggcgatctatagggcttatgaaaagcaacgctgcgtcagc
gttgacgccgatagcgagcagacgaaatttcggtattctggagatgccacctacgatcta
gcccgtatccttgaggccgatgacccttgctttacctgggagacaaatccactgcggcta
ggtctacaagctgtgttcctggacgaaatgcacgacacaaactgggctatgtttacagtg
ttgaaacagttgctgcagttcaaccaaggagcgagctttttgggggttggcgatcgtgac
caggtcattcatgcgcaacatggcgctgacgcctacttcatgggcgaagggttcgataca
tacattgggaaacccgagcgactgccattgacggagtcctatcgatttgggggcgcaatc
tcacaaccgctggcaggattttcagcgaaaaactatgcagccaatcgcgcgcacatttcc
agggtggaggtcaagaaaaccgggtcagcacttgacgttctggccttgatcaaccatgca
atgacggcacgccctggtttacaaccggattcaccaaaatcccaacttgcggttttgctg
cgcaatccaagtgcctccgttgaactggagcacgccctgcgcgagcgctgcatacgctac
caaaccattgatttcacaacatacttggaacgatccgaagttctgtttgtacgcttgttg
cttggatgggcggtggggctgcaggaacccttcaggacaggtatcgatgccctcgccaaa
cgcgctacttgggcgttcctcagcgccaacgcctcggtcaccgcagaggaacagaccgaa
aaatcgctgaaggtgaatggggcatctcttaaacacttcctcgaatatatgttgcccgat
gctttgggcatcaacgatccaagagccacaagatatttgtacacctcggttgacgacgcc
gtgcgcaggcgaatttgcaaggctatcgatttggcagcctccgatgacatccattgtcta
gcaggcgtgtttgactttctggacattggtaatttggcgcgccgtgtctatgtcaaagaa
caagaggctgaggatgcaagagcttcagtgacgggactcctgaaagccagtgaaaagtat
gtttcgatcagccaatttatgcgcagccttatggcgcatgactatgaagcacgtgcagcc
agatttgcgggagatcgaatcattctgtcgagtattgaggccgtaaaaggacttgagttt
gaacacgtcatcgttcctgacgttaacgcgacagattttgatggcgacagcagggatgaa
cgtaacctcttctacgtggccgcatcccgcgcaaaaacaatgctgacgctgacctaccgt
gcgggccatccaagcagctatcttcgccactttgagtcaaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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