KEGG T04655: RA876

Rhodoferax antarcticus: RA876_12025

Entry

RA876_12025       CDS       T04655

Name

(GenBank) pseudouridine synthase

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

rac Rhodoferax antarcticus

Brite

KEGG Orthology (KO) [BR:rac00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rac03009]
    RA876_12025
   03016 Transfer RNA biogenesis [BR:rac03016]
    RA876_12025
Enzymes [BR:rac01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     RA876_12025
    5.4.99.29  23S rRNA pseudouridine746 synthase
     RA876_12025
Ribosome biogenesis [BR:rac03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    RA876_12025
Transfer RNA biogenesis [BR:rac03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    RA876_12025

SSDB

Motif

Pfam:

PseudoU_synth_2

Other DBs

NCBI-ProteinID:

APW46965

Position

2504436..2505341

AA seq 301 aa
MSGFKPPTLNGIGPSCVGLPAGPWPTLIDFLTERFPNVAPATWLARMARGDVFDELGAAI
TPQQASQPPYPANTRLYYYRDVPDEPHIPFEEVVLYQDEHLLVVDKPHFLPVVPSGGYLR
ETVLVRLKHKLGLADLVPIHRIDRDTAGLVMFSKQPASRAAYAALFSRHQVRKTYHAIAP
WRADVPLPQLRQSRIREAGHFMLQHEVPGPVNAITQINVLEVRGDLARYALKPVTGQRHQ
LRVHMLALGLPILNDGLYPTLTPEGQMDHAHPLQLLARELVFTDPVNLAERHFVSQRQLM
F

NT seq 906 nt +upstreamnt +downstreamnt
ttgagcgggtttaaacctcccaccttaaacggtattggccccagctgcgttggcctgccc
gctgggccgtggccgacgctaatcgactttttgaccgagcgctttcccaacgtcgcaccc
gccacctggctggcacgcatggcccgtggcgacgtgtttgacgagcttggcgcagccatc
accccccagcaggccagccagccaccctaccccgccaacacccgcctgtattactaccgc
gacgtgccggatgagccgcatatcccgtttgaggaagtggtgctgtaccaggacgagcac
ctgctggtggtggacaagccacactttttgccggtggtgccctcgggtgggtatttgcgc
gaaacggtgttggtgcgcctcaaacacaagctggggttggctgatctggtgccgattcac
cgcattgaccgcgacaccgcaggactggtgatgttttccaaacaacccgccagccgcgct
gcctacgctgcgctatttagccgccatcaggtgcgcaagacttaccacgccattgccccc
tggcgcgctgatgtgcccctgccgcagttgcgccaaagccgcatccgggaggctgggcat
ttcatgctgcagcacgaagtgcctggcccggtgaacgccatcacgcagattaatgtgctg
gaggtgcgcggtgacttggcccgctacgcgctcaaacccgttaccggacagcggcaccag
ttgcgtgtgcacatgctggcacttggcttgcccattttgaacgacgggctgtaccccacg
ctgacccccgagggtcagatggaccacgcccacccgctgcaactgctggcccgggagctg
gtttttaccgacccggtgaacttggccgagcggcattttgtgagccagcgccagctgatg
ttctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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