KEGG   Rickettsia amblyommatis GAT-30V: MCE_07070
Entry
MCE_07070         CDS       T01787                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ram  Rickettsia amblyommatis GAT-30V
Pathway
ram03030  DNA replication
ram03410  Base excision repair
ram03420  Nucleotide excision repair
ram03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ram00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MCE_07070 (ligA)
   03410 Base excision repair
    MCE_07070 (ligA)
   03420 Nucleotide excision repair
    MCE_07070 (ligA)
   03430 Mismatch repair
    MCE_07070 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ram03032]
    MCE_07070 (ligA)
   03400 DNA repair and recombination proteins [BR:ram03400]
    MCE_07070 (ligA)
Enzymes [BR:ram01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MCE_07070 (ligA)
DNA replication proteins [BR:ram03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MCE_07070 (ligA)
DNA repair and recombination proteins [BR:ram03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MCE_07070 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MCE_07070 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MCE_07070 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MCE_07070 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: AFC70203
UniProt: H8K388
Position
complement(1232099..1234168)
AA seq 689 aa
MQNIDLISEEKAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVYRIKNFLRLNEFAPIFC
EPKIDGLSFSAVYKNGVLTTGATRGDGYIGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDASITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKEGGFNINEISKLASSEEEIFAFYEYLKTNREDLPYEIDGVVYKLNDFA
LQNRMGFIARSPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDVRIKDYVFLQRAGDVIPKIMGVDFDKRPNDAATFDTPLFCLSCNSKL
HYMPEDIIIRCDNGLHCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
REFGSYSNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTNKIVVFTGSLPTISRAEAKATAEKLGAKVAAGLSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgcaaaatattgatttaatatctgaagagaaagcacaaaaattactagaagaactcgct
gataaaatagcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaggtgcctatgttatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtatatcgtataaaaaatttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtttgtctttttctgctgtttataaaaacggggtgcttacaacg
ggagctacaagaggtgacggatatatcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccagagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgatgcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctt
gcttcttcacaagatcaattacttacaaaattaaaagaaggcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaaattttcgccttttacgaatatctcaaaaca
aatagagaagatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaagtccacgctttgctaccgctcataaattt
cctgcaataataggacaaacaaagttactttctattactgtacaggtcggtagaactggt
acgttaacgccagtagccgaacttgaacccatagaaataggcggggtaactgttagcaga
gcaacattacataatttccaagaaattgcacgaaaagatgtgcggattaaggattatgta
ttcctgcaacgtgctggtgatgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatgcagcaacgtttgatactcctttattttgtctgtcatgcaattctaagttg
cattatatgcctgaagatattattatacgctgtgataatggccttcactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgagtttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaatttggcagctatagtaattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacgaacaagatagta
gtatttaccggtagtttaccgacgatatctagagcggaagctaaagcaacagctgagaag
cttggggctaaagttgcagctggcttatcatcgaacacggatttagttgtagccggcgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacgcttataaaaaatgtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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