KEGG   Rhodobaca barguzinensis: BG454_05900
Entry
BG454_05900       CDS       T05218                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
rbg  Rhodobaca barguzinensis
Pathway
rbg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rbg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BG454_05900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rbg03019]
    BG454_05900
   03009 Ribosome biogenesis [BR:rbg03009]
    BG454_05900
Enzymes [BR:rbg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BG454_05900
Messenger RNA biogenesis [BR:rbg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BG454_05900
Ribosome biogenesis [BR:rbg03009]
 Prokaryotic type
  rRNA helicases
   BG454_05900
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19
Other DBs
NCBI-ProteinID: ATX65415
UniProt: A0A2K8KCI0
Position
complement(1238897..1241005)
AA seq 702 aa
MITPLSEALAERGFDKLTPVQNAVTAADIMDQDLLVSAQTGSGKTVGFGMAIAPTLLGTE
ERFGPAAAPLALVVAPTRELAFQVMRELTWLYAKTGAVVTSCVGGMDSRQERRALERGAH
IVVGTPGRLRDHIERGALDLGELRAVVLDEADEMLDMGFREDLEFMLSKAPEERRTLLFS
ATVSPMIAKLAKQYQRDARRISTLGSTDQHADISYQALRVAASDSEHAIFNLLRYHAEES
AIVFANTRAAVSHLSARLTNRGLSTVTLSGELSQTERTHALQAMRDGRARVCVATDVAAR
GIDLPNLNLVIHADLPSNTESLLHRSGRTGRAGRKGISALIVPPRAVRKAENLLKWAKIS
AEWTTAPSVEDVLQKDEERLLADPAWTTPLTEDEQSFAAKLLALHAPEVVAAAYLRLYQQ
RNAAPEDLLPPDTKPAAREHKPFGPSRWFALSVGRNDKAEPRWLLPLLCRAGNLDKTAIG
AIRVQDTETHVELTEASAAGFMATIGADGVLEDGVKVRPMDAAPDRQSGGGRPKPESSPR
PRPEYRASAPSPRPRAEPAPERKAAAAPRAEGERKPRHSASASTAPHAKSKPDSYKPKDK
AEAYKPREKADAPRGKDSYKPRDKADAPRAKAKYERRDPAVKPGDKPAPRAKPKHAGKPA
SFSDARDSSKRFTPPGKDKPAARKPRATARPGGAEPPRRGKR
NT seq 2109 nt   +upstreamnt  +downstreamnt
atgatcactccgctgtccgaagcccttgcagagcgtggcttcgacaaactcacccctgtt
caaaacgcggtcaccgccgccgatatcatggatcaggacctgctggtttcggcccagacc
gggtcgggcaaaacggtaggctttggcatggccatcgcgcccaccttgcttggaaccgaa
gaacgcttcggccctgcggcagcgccgctggcgctggtcgtcgcgcccacacgcgaactg
gcctttcaggtcatgcgcgaattgacatggctttatgccaaaaccggcgcggttgtgacc
tcttgtgtggggggcatggacagtcggcaggaacgccgcgcgctggaacgcggcgcgcat
atcgttgttggcacgccggggcgtttgcgcgaccatatcgaacgtggtgcccttgatctg
ggtgaattgcgcgctgtcgtgctggatgaagccgacgagatgctggatatgggcttccgc
gaagaccttgaattcatgctgtccaaagcccccgaagagcgccggacgctgctgttttcg
gccaccgtctcgcccatgatcgccaaactggccaagcaataccagcgcgacgcgcgccgg
atcagcaccttgggcagcacagaccaacatgccgatatttcatatcaggcgctgcgtgtg
gcggcatctgacagtgaacatgccatcttcaacctgctgcgctatcacgccgaagaaagc
gcgattgtctttgccaatacgcgcgccgctgtcagccatctgtccgcgcgcctgaccaat
cgcgggttgtccactgttaccctgtcgggcgagttaagccagaccgagcgcacccatgcg
ctgcaagccatgcgcgacgggcgcgcgcgggtttgtgtggccacggatgtggccgcgcgc
ggcattgacctgccgaacctcaatctggttattcatgcggaccttcccagcaataccgaa
agcctgctgcaccgttctggccgtaccgggcgcgcggggcgcaagggcatctcggcgctg
atcgtgccaccacgggcggtgcgcaaggcagagaacctgctgaaatgggccaagatttcg
gcagaatggaccactgcgccttcggtcgaggatgtcttgcaaaaggatgaagagcggctg
ctggcagacccggcatggaccacccccctgaccgaggatgagcagagctttgctgccaaa
ctgctggcccttcatgcgccggaagtggtcgcggcagcctatctgcgcctgtatcagcag
cgcaatgccgcgcccgaggacttgttgccaccagacaccaaacccgccgcgcgtgagcat
aagccatttggcccaagccgctggttcgccctgtcagtcgggcgtaatgacaaggcagaa
ccacgctggctgttgccgctgctatgccgcgcgggcaatctggacaaaacagccatcggc
gcgatccgcgtgcaggacaccgaaacacatgtcgaactgaccgaggccagcgccgctggc
ttcatggccaccatcggcgcagatggggtactggaagacggggtcaaggtacgcccgatg
gatgcagcacccgaccggcaatccggcggcggcaggccaaagccggagtccagcccccga
ccacgcccggaataccgcgccagcgcgccttcgccacggccgcgcgcagagccggccccc
gaacgcaaggccgctgccgccccgcgcgccgagggtgaaagaaagccgcgccacagcgca
agcgccagcactgccccgcacgcgaaaagcaagcccgattcttacaagccgaaagacaag
gccgaagcttacaagccgcgggaaaaagctgacgcgccgcgcggcaaggacagctacaag
cccagggacaaagcagatgcgccgcgcgccaaggccaagtatgaacggcgcgatccagca
gtgaaacccggcgacaagcccgcgccaagggccaagccgaaacatgccgggaaacccgcc
tcgttcagcgatgcgcgcgacagctccaaacgcttcacaccgcccggtaaggacaagcct
gccgcgcgcaaaccccgcgccaccgcgcggcccggcggggcagagccaccccggcgcggc
aagcgctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (45)   

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