KEGG   Rhodobaca barguzinensis: BG454_14115
Entry
BG454_14115       CDS       T05218                                 
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
rbg  Rhodobaca barguzinensis
Brite
KEGG Orthology (KO) [BR:rbg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rbg03032]
    BG454_14115 (topA)
   03400 DNA repair and recombination proteins [BR:rbg03400]
    BG454_14115 (topA)
Enzymes [BR:rbg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BG454_14115 (topA)
DNA replication proteins [BR:rbg03032]
 Prokaryotic type
  DNA Topoisomerases
   BG454_14115 (topA)
DNA repair and recombination proteins [BR:rbg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BG454_14115 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Toprim_4
Other DBs
NCBI-ProteinID: ATX66818
UniProt: A0A2K8KJ09
Position
2902563..2905133
AA seq 856 aa
MAVVVVESPAKAKTINKYLGTGYTVLASYGHVRDLPPKDGSVDTEHEFEMSWEVASDSRK
HLKAISDALKDDNELILATDPDREGEAISWHLTEALAKSRAIKKTTPVKRVVFNAITKDA
VTEAMKSPRDVDMPLVHAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVE
REMEIEAFRAQEYWSVSAALATPRGQDFTAKLVSLAGKKLDKFDIATGEAAELAVQAVRS
RDLTVTSVEAKPASRNPSAPFMTSTLQQEASRKFGMGAKHCMSTAQRLYEAGYITYMRTD
GIDMAPEAVMAARDVIKARYGADYVPKSPRMYKNKAKNAQEAHECIRPTDMAVSPDKLKI
TDNDQRKLYDLIWKRTIAGQMEAARLERTTVEIGSKDGQVGLRATGQVVLFDGFLKVYEE
GRDDVIDDDDKRLPQMAQGDALTKHSVTPEQHFTQPPPRYTEATLVKRMEELGIGRPSTY
ASIVTTIQDRGYVTKDKNRLIAQDKGRLVTIFLVNYFRRYLEYDFTADLEAQLDDVSAGD
RDYKDVLARFWRDFSAAIAETSELRITEVLEKIDEVLAPHLYPPREDGTDPRVCPKCGAG
RLNLKTARSGGAFIGCNNYPDCRYTRPLAGEDGNAELSGDGKLLGHDNGDPISLRTGRFG
PYVQRGEATKEDPKPPRASLPKGWEVDSIDLERALMLLSLPRPVGPHPDDGELIEAGIGR
YGPFVKHGKKYANLPDVDEVFTIGMNRAVEVLASKPERGRAAAAEPLKTLGDHPDGGALA
VMKGRYGPYVKWEKVNATLPKDMAPEEITLEQAIELVNAKASAKPKKKAAAKKPAAKKPA
AKKPAAKKKPATKAAK
NT seq 2571 nt   +upstreamnt  +downstreamnt
atggcagttgtcgtcgtcgagtcgcccgccaaggcaaaaaccatcaacaaataccttggc
actggctacactgttctggcctcttacggccatgtgcgcgacctgccacccaaggatggc
tcggtcgatacagagcatgaattcgaaatgtcatgggaagtcgccagcgattcccgcaag
cacctcaaggcgatctcggacgcgctgaaagacgacaatgagttgattcttgcaaccgac
cccgaccgcgaaggcgaggcaatttcctggcacctgacagaggcattggccaagtcacgc
gcgatcaagaaaaccacccccgtcaagcgtgttgtgttcaacgcgatcaccaaagacgcc
gtgaccgaggcgatgaagtccccccgcgatgtggatatgccgctggtccatgcctatctt
gcgcgccgcgcgctggactatctggtgggcttcaacctcagcccggtactgtggcgcaaa
ctgcccggcgcgaagtcggcggggcgggtacaatcggtctgcctgcgcctgattgtcgaa
cgcgaaatggagatcgaggcctttcgcgcgcaggaatactggagtgtcagcgccgccctg
gccaccccgcgcgggcaggatttcaccgccaagctggtcagccttgcgggcaagaagctg
gacaagttcgatattgcaaccggcgaggcggcggaactcgccgttcaggccgtgcgttca
cgtgacctcacagttacttcggtcgaggcgaaacccgccagccgcaacccctcggcaccg
ttcatgacctcgaccttgcagcaggaagccagccgcaaattcggcatgggggcgaaacat
tgcatgtctaccgctcagcgcctctatgaagcgggctatattacttacatgcgtacagac
gggatcgacatggcccccgaggccgtgatggctgcgcgcgacgtgatcaaagctcgctac
ggggcggattatgtgcccaaatccccgcgcatgtacaaaaacaaggccaagaacgcgcag
gaagcgcatgaatgcatccgccccaccgatatggccgtcagccccgacaagctgaaaatc
accgataatgaccagcgcaagctttatgacctgatctggaaacgcacgattgcaggccag
atggaggccgcgcggctggaacgcaccacggtcgagattggcagcaaggacggacaagtc
ggcctgcgcgccacagggcaggtggtgctgtttgatggcttcctcaaggtctatgaggaa
gggcgcgatgatgtcattgatgacgatgacaagcgcctgccgcaaatggcgcaaggcgat
gccctgaccaaacacagcgtcacccctgaacagcatttcacccagcccccgccccgctat
accgaggccacgctggtcaagcgcatggaagaactgggcattggccgaccatccacctat
gccagcatcgtcaccacgattcaggatcgcggctatgtcaccaaggacaagaaccgcctg
atcgcacaggacaaggggcggctggtcaccatctttctggtcaattatttccgccgctat
ctggaatatgatttcaccgccgatcttgaagcgcagcttgacgatgtttcggcgggcgat
cgtgactacaaggatgttctggcgcggttctggcgcgacttctcggcagcaattgccgaa
acatccgaattgcgcatcaccgaagtgctggaaaagatcgacgaggttctggccccgcat
ctctaccccccgcgcgaagatggcaccgacccgcgcgtctgccccaaatgtggcgcagga
cgactgaacctgaagaccgcgcgctctggcggcgctttcatcgggtgcaacaattacccc
gactgccgttacacccgcccgctcgccggtgaagatggcaatgcggaattgtcgggcgat
ggaaaattgctgggccatgacaatggcgacccgatcagcctgcgcacaggccggtttggc
ccttatgtgcagcgtggcgaagcaaccaaggaagaccccaagcccccgcgcgcctctctg
ccaaagggctgggaggtggacagtatagacctggaacgcgcgctgatgctgttgtccctg
ccccgccctgtcggcccacaccccgatgatggcgagttgatcgaggcaggcattggccgc
tatggccccttcgtgaagcatggcaagaaatatgccaatctgcccgatgtggacgaagtc
tttaccattggcatgaaccgcgccgtcgaggtgctggcctcaaaacccgaacgcggccgc
gccgccgcagcagagccgttgaaaaccctgggcgaccaccccgatggcggtgcgctggct
gtgatgaaagggcgctatggtccctatgtgaaatgggaaaaggtcaatgcaaccttgccc
aaggacatggcccccgaagagatcacgctggagcaggcgattgaactggtgaatgccaag
gccagtgccaagccaaagaaaaaggccgccgccaaaaaaccggcggcgaagaagcccgca
gcaaagaagccggccgccaaaaagaaacctgcgacaaaagctgcaaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (40)   

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