KEGG   Rhizobiales bacterium NRL2: TEF_01020
Entry
TEF_01020         CDS       T04419                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rbm  Rhizobiales bacterium NRL2
Pathway
rbm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rbm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TEF_01020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rbm03021]
    TEF_01020
   03019 Messenger RNA biogenesis [BR:rbm03019]
    TEF_01020
Transcription machinery [BR:rbm03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     TEF_01020
Messenger RNA biogenesis [BR:rbm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     TEF_01020
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT AAA_22 ATPase_2 Spore_III_AA AAA_25 AAA
Other DBs
NCBI-ProteinID: ANK79529
Position
complement(235057..236313)
AA seq 418 aa
MNLRELKAKSPTELLEMAEELEIENASTMRKQDMQFAILKQLAEDGEEITGVGVLETLSD
GFGFLRSAESNYLPGSDDIYVSPNQIRRFSLRTGDTVEGEIRSPKDGERYFALLKVAKIN
FEDPEAVRHKVAFDNLTPLYPDERLHLEFADPTKKDLSNRVIELVTPIGKGQRALIVAPP
RTGKTVLMQNMAHAIESNHPDVYLIVLLIDERPEEVTDMSRSVQGEVISSTFDEPAARHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIILDRKLADKRTFPAIDI
TRSGTRKEELLVDKSTLTKMWVLRRILQPMGVTDAMEFLLGKLKDSKTNQDFFDSMNT
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgaacctacgcgaactgaaggcgaaatcgcccaccgaactcctcgaaatggccgaggag
ctggagatcgagaacgcgtccaccatgcgcaagcaggacatgcagttcgcgatcctgaag
cagcttgccgaggacggcgaggagatcaccggcgtcggcgtgctcgaaaccctctccgac
ggtttcgggttcctgcgctcggcggaatcgaactacctgcccggctccgacgacatctat
gtcagtcccaaccagatccgccgcttctcgctcaggaccggcgacacggtcgaaggcgag
atccgttcgcccaaggacggcgagcgctacttcgcgctgctcaaggtcgccaagatcaac
ttcgaggacccggaagcggtccgccacaaggtggccttcgacaacctgacgcccctctac
cccgacgagcggctgcatctggaattcgccgacccgacgaagaaggatctctccaaccgg
gtgatcgagctggtcacgccgatcggcaagggccagcgtgcgctgatcgtcgcgccgccg
cgcaccggcaagaccgtgctgatgcagaacatggcgcacgccatcgagagcaatcacccc
gacgtctacctgatcgtgctgctgatcgacgaacggcccgaggaagtcaccgacatgtcc
cgctccgtgcagggcgaggtgatctcgtcgaccttcgacgagccggcggcccgccacgtc
caggtcgcggaaatggtgatcgagaaggccaagcgcctggtcgagcacaagcgcgacgtg
gtcatcctgctggactccatcacccgcctggcgcgcgcctacaacaccgtggtgccgtcg
tcgggcaaggtgctgaccggcggcgtggacgccaacgccctgcagcgcccgaagcgcttc
ttcggcgccgcgcgcaatatcgaggaaggcggctcgctcaccatcatctcgaccgcgctg
atcgacacgggcagccgcatggacgaggtgatcttcgaggagttcaagggcaccggcaac
tccgagatcatcctggaccgcaagctggccgacaagcgcaccttcccggcgatcgacatc
acgcgctccggcacccgcaaggaggaactgctggtcgacaagagcacgctgacgaagatg
tgggtgctgcgccgcatcctgcagcccatgggcgtcaccgacgccatggagttcctgctc
ggcaagctgaaggacagcaagaccaaccaggacttcttcgattcgatgaacacctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (56)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (71)   

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