KEGG   Rubrivivax benzoatilyticus: RBXJA2T_03267
Entry
RBXJA2T_03267     CDS       T04092                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rbn  Rubrivivax benzoatilyticus
Pathway
rbn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rbn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RBXJA2T_03267
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rbn03021]
    RBXJA2T_03267
   03400 DNA repair and recombination proteins [BR:rbn03400]
    RBXJA2T_03267
Enzymes [BR:rbn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RBXJA2T_03267
Transcription machinery [BR:rbn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RBXJA2T_03267
DNA repair and recombination proteins [BR:rbn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RBXJA2T_03267
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Biotin_lipoyl_2 TMF_DNA_bd
Other DBs
NCBI-ProteinID: EGJ09316
AA seq 1409 aa
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYEAKRVEYGDEFIALM
GAEGIKKLLEEMDLDVEIDKLRNDMTGSELKIKKNSKRLKVMEAFKKSGIKPHWMILEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMAIELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVL
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATRERINGKGEGMVFADLMELQRALDNGVV
EITAKINVRLTEWLKDKVTGEFVPETKLVETTVGRALLSQILPKGLPFSNLNKALKKKEI
SRLINVSFRKCGLKETVVFADKLLQSGFRLATRAGISIAIDDMLVPPQKHELIARAEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMSQLSKQKTIDRNGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGLAMRALVEGGEVIESLRDRVLG
RVTATEVLHLETQETLMGAGEMLDEDALDKLEAAGVDEVKVRTPLTCGTRFGLCAKCYGR
DLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSDGIIGFN
STMRYVTNGKGELVVIARSGEIIIADPHGRERERHKLPYGATLNVKPDQQVKAGTVLANW
DPLTRPIITEFAGKARFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLL
DAQGVEVKIPGTDHAVTIGFPVGALIQVRDGQDLMPGEVLARIPMEGQKTRDITGGLPRV
AELFEARSPKDVGTLAEITGTVSFGKETKGKVRLQITDPDGKVYEELVPKEKNILVHEGQ
VVNRGELIVDGAADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQIVNPGDTGYIAGEQVERSELLDTNDRMRAEGKIPATHADVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHAARRAKEAMDESERRA
IALQEAEELAAVQLAGVDAASEAGDNAAE
NT seq 4230 nt   +upstreamnt  +downstreamnt
atgaagggactgctcgaccttttcaagcaattcacgcccgacgaacacttcgacgcgatc
aagatcgggctcgccagccccgagaagatccgctcgtggtcgttcggcgaagtgaagaag
cccgagacgatcaactaccgtacgttcaagcctgaacgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggtcacatcgacctggccgcgccctgcgcccacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtcgtcgtcgacccgggcatgacgccgctgaagaagttctcgatcatg
tccgaggacgactacgaggccaagcgcgtcgagtacggtgacgagttcatcgcgctgatg
ggtgccgagggcatcaagaagctgctcgaggagatggacctcgacgtcgagatcgacaag
ctccgcaacgacatgaccgggtcggagctgaagatcaagaagaactccaagcgcctcaag
gtgatggaggccttcaagaagtcgggcatcaagccgcactggatgatcctcgaggtcctg
ccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacg
tcggacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctggcccgcctg
ctcgagctgaaggcgccggagatcatcgtccgcaacgaaaagcggatgctccaggaagcg
gtcgattcgctgctggacaacggccgccgcggcaaggcgatgaccggcgcgaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactccggccgttcggtcatcgtcgtcggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcgatcgagctgttcaagccgttcatcttc
agccgcctcgaggcgatgggcatcgccacgacgatcaaggccgccaagaaggaagtcgaa
gccggcacgccggtggtgtgggacatcctggaagaggtcatcaaggagcacccggtcctg
ctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctcatc
gaaggcaaggcgatccagctgcacccgctggtctgctcggcgttcaacgccgacttcgac
ggtgaccagatggccgtgcacgtgccgctgtcgatcgaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggccaacggcgaaccgtcgatcgtgccg
tcgcaggacgtggtgctgggcctgtactacgccacccgcgagcgcatcaacggcaagggc
gaaggcatggtcttcgccgacctgatggagctgcagcgcgcgctggacaacggcgtcgtc
gagatcaccgccaagatcaacgtccgcctgaccgagtggctcaaggacaaggtcacgggc
gagttcgtgcccgagaccaagctcgtcgagaccaccgtcggccgtgcgctgctgtcgcag
atcctgcccaagggcctgccgttctcgaacctgaacaaggcgctgaagaagaaggagatc
tcgcgtctcatcaacgtcagcttccgcaagtgcggcctgaaggagacggtggtcttcgcc
gacaagctgctgcaaagcggcttccgcctcgcgacgcgcgccggcatctcgatcgccatc
gacgacatgctggtgccgccgcagaagcacgagctcatcgcccgtgccgagaaggaggtc
aaggagatcgagcagcagtacgtctcgggtctcgtgaccgccggcgagcgctacaacaag
gtggtcgacatctggggcaagaccggcgacgaggtcggcaaggtcatgatgtcgcagctg
tccaagcagaagaccatcgaccgcaacggcaaggaagtcgaccaggagtcgttcaactcc
atctacatgatggccgactccggggcgcggggctccgcggcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcacggcg
aacttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggtgcccgcaag
ggcctggcggacacggcgctgaagaccgcgaactcgggttacctgacgcgccgtctggtc
gacgtgacccaggatctggtcgtcaccgaggacgattgcggcacccagaacggcctggcc
atgcgtgccctggtcgagggcggtgaagtcatcgagtcgctgcgcgaccgcgtgctcggc
cgcgtcaccgcgaccgaggtcctgcacctcgagacgcaggaaacgctgatgggcgccggc
gagatgctcgacgaggacgcgctcgacaagctcgaggccgccggcgtcgacgaggtcaag
gtgcgcacgccgctgacctgcggcacgcgcttcggcctgtgcgccaagtgctacggccgc
gacctgggccgtggcggcctggtcaacgtcggcgaggcggtcggtgtcatcgccgcccag
tcgatcggcgagccgggcacgcagctgacgatgcggaccttccacatcggcggtgcggcg
tcgcgcgcggcggtcgcgtcgagcgtcgaggccaagtccgacggcatcatcggcttcaac
agcacgatgcgctacgtcacgaacggcaagggcgaactcgtcgtcatcgcgcgttcgggc
gagatcatcatcgccgacccgcacggccgcgagcgcgagcgccacaagctgccgtacggc
gcgacgctcaacgtcaagcccgaccagcaggtcaaggccggcaccgtgctggccaactgg
gacccgctgacccgcccgatcatcaccgagttcgccggcaaggcgcgcttcgagaacgtc
gaggaaggcgtcaccgtcgccaagcaggtcgacgaggtcaccggtctgtcgacgctggtc
gtcatcgacccgaagcgccgcggcgcggccaaggtcgtgcgcccgcaggtcaagctgctg
gacgcgcagggcgtcgaggtcaagatcccgggcaccgaccacgcggtgacgatcggcttc
ccggtcggcgcgctgatccaggtgcgcgacggtcaggacctgatgccgggcgaggtgctg
gcgcgcatcccgatggaaggccagaagacccgcgacatcaccggcggtctgccgcgtgtg
gccgagctgttcgaagcccgctcgccgaaggacgtcggcacgctggccgagatcaccggc
acggtgtcgttcggcaaggagaccaagggcaaggttcgcctgcagatcaccgatccggac
ggcaaggtctacgaagagctggtgcccaaggagaagaacatcctggtgcacgaaggccag
gtcgtgaaccggggcgagctgatcgtcgacggcgcggcggatccgcaggacatcctgcgc
ctgctgggcatcgaggagctggcgcgctacatcgtcgacgaggtccaggacgtctaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtgcagatcgtcaacccgggcgacaccggctacatcgccggcgagcaggtcgagcgt
tcggagctgctggacaccaacgaccgcatgcgcgccgagggcaagatcccggcgacgcac
gccgacgtgctgctcggtatcacgaaggccagcctgtcgaccgactcgttcatctccgcg
gcctccttccaggagaccacccgcgtgctgaccgaggcggcgatcatgggcaagcgcgac
gaactgcgcggcctgaaggagaacgtcatcgtcggccgcctgatcccggcgggcaccggc
atggcgttccacgccgcgcgtcgcgccaaggaggcgatggacgagagcgagcgtcgtgcg
atcgcgctgcaggaggccgaggaactggccgcggtgcaactggccggcgtcgatgcggcc
agcgaggcgggggacaacgcggccgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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