KEGG   Rhodococcus pyridinivorans TG9: CEJ39_09405
Entry
CEJ39_09405       CDS       T05830                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
rby  Rhodococcus pyridinivorans TG9
Pathway
rby03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rby00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CEJ39_09405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rby03019]
    CEJ39_09405
   03009 Ribosome biogenesis [BR:rby03009]
    CEJ39_09405
Enzymes [BR:rby01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CEJ39_09405
Messenger RNA biogenesis [BR:rby03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CEJ39_09405
Ribosome biogenesis [BR:rby03009]
 Prokaryotic type
  rRNA helicases
   CEJ39_09405
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII UvrA_inter HEM4 CMS1 Flavi_DEAD
Other DBs
NCBI-ProteinID: AWZ24374
Position
1982217..1984097
AA seq 626 aa
MSDIQDAPDQETAALTFADLDIDARVLQALSDVGYESPSPIQAATIPPLLEGRDVVGLAQ
TGTGKTAAFSVPILSRIDTSVKRPQALVLAPTRELALQVAEAFGKYSVHIPGLSVLPIYG
GQAYGVQLSGLRRGAQVIVGTPGRVIDHLAKGTLDISELEFLVLDEADEMLTMGFQEDVE
RILADTPDTKQVALFSATMPGAIRRLSKQYLKDPQEITVKSKTTTSANISQRWVLVSHQR
KLDALTRILEVETFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTINQL
KNGTLDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAP
RERHLLKAIERATRQPLAEMQLPTVEDVNAQRVSKFNDSITEALASDHLQLFRTFIEDYE
REHDVPLADIAAALAVLSRDGESFLMEAEPEPVAPPRREREPRERPPRRFDDGPKVGRDG
QEMTTYRIAVGKRHRVQPGAIVGAIANEGGLRRGDFGHISIRADHSLVELPKDLSPQTLD
ALRSTRISGVLIQLQPDSGAPSGRPSSYRGRDDRRGDDRRGGDRRDHGKRDRGGKREYGD
SRGGRSGDFTHRSDRNDRGGRGGYRD
NT seq 1881 nt   +upstreamnt  +downstreamnt
atgagtgatattcaagacgcccccgaccaggagaccgcagctctcacgtttgccgatctc
gacatcgatgcacgtgtgctgcaagctctttcggatgtgggttacgagtccccgtcgccg
atccaggcggcgaccatcccaccgctgctggagggacgggacgtcgtcggtctcgctcag
accggcaccggcaagaccgccgccttctcggtgccgatcctctcgcgtatcgacacctcc
gtgaagcggccccaggccctggtgctggcgcccacccgcgagctcgcgctgcaggtcgcg
gaggctttcggtaagtattccgtccatatcccgggcctgtccgtcctgcccatctacggc
ggtcaggcatacggtgtacagctgtccggcctccgccgcggcgcccaggtcatcgtcggc
acccccggacgtgtgatcgatcacctcgccaagggcaccctcgacatctccgaactcgag
ttcctcgtcctcgacgaggccgacgagatgctcaccatgggcttccaggaggacgtcgag
cgcatcctcgccgacacccccgacaccaagcaggtcgcgctgttctccgcgaccatgccg
ggcgcgatccgccggctgtcgaagcaatacctgaaggatccgcaggagatcaccgtcaag
tcgaagacgacgacgtcggcgaacatctcccagcgctgggttctcgtctcccatcagcgc
aagctcgacgcgctgacccgaatcctcgaggtcgagaccttcgaggccatgatcatcttc
gtgcgcacgaagcaggccaccgaggacctggccgagcgcctgcgcgcccgcggtttctcc
gccgccgccatcaacggcgacatcgtgcaggcccagcgcgagcgcacgatcaaccagctc
aagaacggcacgctcgacatcctcgtcgccaccgacgtcgccgcgcgtggtctcgacgtc
gagcgcatcagccacgtcgtcaactacgacatccctcacgacaccgagtcgtacgtgcac
cgcatcggccgcacaggccgcgccggccgcaccggcgacgcgctgctgttcgtcgctccg
cgcgagcgtcacctgctcaaggcgatcgagcgggccacccgccagccgctcgccgagatg
cagctgcccaccgtcgaggacgtcaacgcccagcgcgtatcgaagttcaacgactcgatc
accgaggcgctcgcctccgatcacctgcagctgttccgcaccttcatcgaggactacgag
cgtgagcacgacgtgccgctcgccgacatcgcggccgcgctggcggtgctgtctcgcgac
ggcgagtcgttcctcatggaggccgaacccgagccggtcgcaccgccgcgccgcgagcgc
gaaccgcgcgagcgtccgccgcgtcgcttcgacgacgggccgaaggtcggtcgcgacggc
caggagatgaccacctaccgcatcgccgtaggcaagcgtcaccgcgtgcagcccggtgcg
atcgtcggtgccatcgccaacgagggcggactgcgccgcggcgatttcgggcacatcagc
atccgtgccgatcacagcctcgtcgagctgccgaaggatctgtcgccgcagaccctcgac
gcgctgcgctccacccgaatctcgggcgtgctcatccagctgcagcccgactccggcgca
ccgtccggacgtcccagctcgtatcgcggacgcgacgaccgtcgcggcgacgatcgacgc
gggggagaccgtcgcgatcacggcaagcgcgatcgtggcggcaagcgcgagtacggcgac
agccgtggcggccgctccggcgacttcacgcaccgcagcgaccgcaacgatcgtggtggt
cgcggcggataccgcgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (8)   
   Pfam (8)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system