KEGG   Rhodococcus pyridinivorans TG9: CEJ39_19905
Entry
CEJ39_19905       CDS       T05830                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rby  Rhodococcus pyridinivorans TG9
Pathway
rby03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rby00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CEJ39_19905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rby03021]
    CEJ39_19905
   03400 DNA repair and recombination proteins [BR:rby03400]
    CEJ39_19905
Enzymes [BR:rby01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CEJ39_19905
Transcription machinery [BR:rby03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CEJ39_19905
DNA repair and recombination proteins [BR:rby03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CEJ39_19905
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 HTH_23
Other DBs
NCBI-ProteinID: AWZ26130
Position
complement(4274982..4278488)
AA seq 1168 aa
MLEGRILAVSSQTKAVAGIPGAPTRVSFAKIREPLEVPGLLDLQTDSFEWLIGSERWRAK
AAERGDGHVVGGLEEILDELSPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDMTYAAPL
FVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDKTVDK
STEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSTEQIVERFG
FSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGR
YKINKKLGLNTGQPIEASTLTEEDIVATIEYLVRLHAGENKMTVPGGVEVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEVEYLTADEEDRYLIAQANSPIGSDNR
FSDERVLVRKKGAEIEYVAADQVEYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRSESPIVGTGMELRAAVDAGDVIVTEKSGVIEEVSADFITVMADDGTRKTYRLR
KFDRSNQGTCSNQRPIVDEGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIG
AEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGENGKVIGVRVF
SREDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPV
DIILNTHGVPRRMNIGQVLETHLGWIGKAGWQIQVADDGSRPEWAQNLSEEMLAAEPDTN
IATPVFDGAREEELTGLLSSTLPNRDGEVMVGPDGKATLFDGRSGEPFPYPVSVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIAMADGD
DEDLERAAANLGINLSRNESATVDDLAN
NT seq 3507 nt   +upstreamnt  +downstreamnt
gtgctggaaggacgcatcttggcagtctctagccagaccaaggcagtagccggaatcccc
ggagccccgacgagggtgtcgttcgcgaagattcgcgaacccctcgaagttcccgggctc
ctcgatctacagaccgattccttcgaatggttgatcggctcggagcgctggcgcgcgaag
gctgccgagcgcggcgacggtcacgtcgtcggtggcctggaggagatcctcgacgagctc
tcgccgatcgaggacttctcgggttcgatgtccctgtccttctccgatcctcgtttcgac
gaggtcaaggcctccgtcgaggagtgcaaggacaaggacatgacgtacgcggctccgctg
ttcgtcactgccgagttcatcaacaacaacaccggcgagatcaagagccagacggtcttc
atgggtgacttcccgatgatgaccgacaagggcaccttcatcatcaacggcaccgagcgt
gtcgtggtgtcccagctcgtccgttcgccgggcgtgtacttcgacaagaccgtcgacaag
agcaccgagaaggacctgcacagcgtcaaggtcatcccgggccgcggtgcctggctcgag
ttcgacgtcgacaagcgcgacaccgtcggtgtgcgtatcgaccgcaagcgccgtcagccg
gtcaccgtgctgctcaaggcgctgggctggtccaccgagcagatcgtcgagcgtttcgga
ttctccgagatcatgatgtcgacgctcgagaaggacaacacggcgggcaccgacgaggcg
ctcctcgacatctaccgcaagctccgtccgggcgagccgccgaccaaggagagcgcgcag
accctgctggagaacctcttcttcaaggacaagcgctacgacctggcgcgcgtgggccgt
tacaagatcaacaagaagctcggcctgaacacgggtcagccgatcgaggcgtccaccctc
accgaggaagacatcgtcgccacgatcgagtacctcgtgcgtctgcacgcgggcgagaac
aagatgaccgtccccggcggcgtcgaggttcccgtcgaggtcgacgacatcgaccacttc
ggcaaccgtcgtctgcgcacggtcggtgagctcatccagaaccagatccgcgtgggcctg
tcccgcatggagcgcgtggtccgtgagcgcatgaccacccaggacgtcgaggcgatcacg
ccgcagaccctgatcaacatccgtccggtcgtggctgcgatcaaggagttcttcggaacc
tcccagctgtcgcagttcatggaccagaacaacccgctgtcgggcctgacgcacaagcgt
cgtctgtcggcgctgggccccggcggtctgtcgcgtgagcgcgccggcctcgaggtccgc
gacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggctcgctgtcggtgtacgcgcgggtcaacccgttcggcttcatcgag
acgccctaccgcaaggtcgtcgacggtgtcgtcaccgacgaggtcgagtacctcacggcc
gacgaggaggaccgctacctcatcgcgcaggccaactcgccgatcggctccgacaaccgc
ttctcggacgagcgtgtcctcgtccgtaagaagggcgcggagatcgagtacgtcgccgcc
gaccaggtcgagtacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgcgatg
atcccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgcagcgt
caggccgtgccgctggtgcgcagcgagtcgccgatcgtcggtaccggcatggagctgcgt
gccgccgtcgacgccggcgacgtcatcgtcaccgagaagagcggcgtgatcgaagaggtc
tccgccgacttcatcaccgtcatggccgacgacggaacccgcaagacctaccgtctgcgc
aagttcgaccgttcgaaccagggcacctgctcgaaccagcgtccgatcgtggacgaggga
cagcgcgtcgagtccggccaggtcctcgccgacggcccctgcaccgagaacggtgagatg
gcgctcggcaagaacctgctcgtggcgatcatgccgtgggagggccacaactacgaggac
gcgatcatcctgtcgcagcgcctcgtggaggaggacgtgctcacctcgatccacatcgag
gagcacgagatcgacgcccgcgacaccaagctcggtgccgaggagatcacccgcgacatc
ccgaacgtctccgacgaggtccttgccgacctcgacgagcgtggcatcgtccgcatcggt
gccgaggtccgcgacggcgacatcctcgtcggcaaggtcacgccgaagggcgagaccgag
ctgacccccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtccgc
gacacctcgctgaaggtgccccacggtgagaacggcaaggtcatcggtgttcgcgtgttc
tcgcgcgaggacgacgacgatctgcctccgggtgtcaacgagctcgtccgcgtatacgtg
gcgcagaagcgcaagatccaggacggcgacaagctcgccggccgccacggcaacaagggc
gtcatcggcaagatcctcccgcaggaggacatgccgttcctgcccgacggcaccccggtc
gacatcatcctgaacacccacggtgttccgcgtcgtatgaacatcggccaggtcctcgag
acgcacctgggctggatcggcaaggccggctggcagatccaggtggccgacgacggcagc
cgtcccgagtgggcacagaacctctccgaggagatgctcgccgccgagcccgacaccaac
atcgccacgccggtgttcgacggtgcccgcgaggaggagctgacgggtctgctgtcctcg
acgctgccgaaccgcgacggcgaggtcatggtcggccccgacggcaaggcgacgctgttc
gacggtcgctccggcgagccgttcccgtacccggtgtcggtcggctacatgtacatcatc
aagctgcaccacctggtcgacgacaagatccacgcgcgttcgaccggtccgtactcgatg
atcacgcagcagccgctcggtggtaaggcgcagttcggtggtcagcgcttcggtgagatg
gagtgctgggcgatgcaggcctacggcgccgcctacaccctccaggagctgctcacgatc
aagtccgacgacgtcgtcggtcgcgtcaaggtctacgaggcgatcgtcaagggcgagaac
atccccgagccgggtatccccgagtcgttcaaggtgctcctcaaggaactccagtcgctg
tgcctgaacgtggaggtcctctccagcgacggcgcggccatcgcgatggccgacggcgac
gacgaggacctcgagcgggcggccgccaacctgggcatcaacctttcccgcaacgagtcg
gccacggtcgacgacctcgcgaactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system