KEGG   Rickettsia canadensis CA410: RCA_04355
Entry
RCA_04355         CDS       T01736                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rcc  Rickettsia canadensis CA410
Pathway
rcc03030  DNA replication
rcc03410  Base excision repair
rcc03420  Nucleotide excision repair
rcc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rcc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RCA_04355 (ligA)
   03410 Base excision repair
    RCA_04355 (ligA)
   03420 Nucleotide excision repair
    RCA_04355 (ligA)
   03430 Mismatch repair
    RCA_04355 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcc03032]
    RCA_04355 (ligA)
   03400 DNA repair and recombination proteins [BR:rcc03400]
    RCA_04355 (ligA)
Enzymes [BR:rcc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RCA_04355 (ligA)
DNA replication proteins [BR:rcc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RCA_04355 (ligA)
DNA repair and recombination proteins [BR:rcc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RCA_04355 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RCA_04355 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     RCA_04355 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RCA_04355 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: AFB21426
Position
complement(945527..947596)
AA seq 689 aa
MQNIYLISEKEAKKLLKELADKIERYNHAYYIEDNHLVSDAEYDQLFYTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQAPMLSLSNVFDEQDVKDFVDRIKNFLRLNEFAPIFC
EPKIDGLSFSAIYKNGLLTIGATRGDGYIGEDMTANIKTIKNFPHKINNAPEFLEVRGEI
YIEKQDFFNLNKEQEEQGRDKFANPRNAAAGSLRQLDSSVTAKRPLKYFVYSGGATEQNI
ASSQNELLKKLKEFGFRVNEISKLADSEEEIFAFYEYLKTNRENLSYEIDGVVYKLNDFA
LQNRMGFIARAPRFATAHKFPAIVGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIIRKDVRIRDYVFLQRAGDVIPQIIGVDIGKRSTDATTFNTPLFCPSCNSKL
HYIPEDIIIRCDNVLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
LLKEKNEASLTKLENMDGWGRKSVENLFKNIEESRNVSLPRFIYALGIRHIGEQNAKLLA
REFESYNNFISQIELLSKNDSNIYQKLNNLEGIGDKILVDIINFFDVKENIELIKKLGEV
LNIEDYKETKEHSSLTGKIVVFTGSLPTTSRVEAKAMAEKLGAKVAVSVSSNTDLVIAGV
DAGSKLKKAKELGIKIIDEEEWLTIVNNV
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgcaaaatatttatttaatatctgaaaaggaagcaaaaaaattattaaaagaactggct
gataaaatagaacgctataatcatgcttattatatagaagataatcatttagtttcagat
gctgagtatgatcagctattttataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaag
gttacacatcaagcaccaatgctctctcttagtaatgtctttgatgagcaagatgttaaa
gattttgtagatcgtataaaaaatttcttacgtcttaatgagtttgctcctatcttttgt
gaacctaaaatagacggcttatctttttctgctatttataaaaatgggctgcttacaata
ggagctacaagaggggatggatatataggtgaggatatgacagcaaatattaaaacaatc
aaaaatttccctcataaaattaataatgctccggagtttttagaagtacgcggagaaatt
tatattgaaaaacaagatttttttaacctaaataaagaacaagaagagcagggtagagat
aaatttgcaaatccgcgtaatgctgctgctggatcacttcgtcagttagattcttcagtt
actgcaaaaagaccactaaaatattttgtttattcaggaggagcaactgaacaaaatatc
gcttcttctcaaaatgaattacttaaaaaattaaaagaattcggctttagagttaatgaa
atatctaaacttgcagattccgaagaagaaatttttgctttttacgaatatctaaaaaca
aatagagaaaatttatcttatgaaattgacggtgtagtatataagctcaatgattttgca
ctgcaaaatagaatgggatttatagctcgtgctccaagatttgctactgctcataaattt
cctgctatagtaggacaaacgaagctgctttctattacggtgcaagtgggcagaaccggc
acgttaactccggtggccgagcttgaacccatagaaataggtggggtaactgttagcaga
gcaacactgcataatttccaagaaattatacgaaaagacgtgcggatcagggattatgta
ttcctgcaacgtgctggtgacgttattcctcaaatcattggggttgatataggaaagcgt
tccaccgatgcaacaacatttaatactcctttattttgcccttcgtgcaattctaagtta
cattatattcctgaagatattattatacgctgtgataacgttcttaactgtcccgctcag
aattatgagcgtatacgccatttcgtatcgaaaaatgctatggatattgaagggttgggg
cgtaagcaagttgagtttttaatagataagggattaattagcaatcctttagatatattc
ttattaaaagaaaaaaatgaagctagcttaacaaagcttgaaaatatggatgggtggggt
agaaaatcagtagaaaatctttttaaaaatatcgaagaatcaagaaatgtcagtttgcca
aggtttatatatgcattaggcataaggcatatcggtgaacaaaacgctaaattgcttgct
agagaatttgaaagctataataactttataagtcaaatagaattactgagtaaaaacgat
tctaatatctatcaaaaactaaataatctagaaggaatcggcgataagattctagtagat
attattaatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaagta
ttaaatattgaagattataaagagactaaagaacacagtagtttaacaggtaaaatagtg
gtatttactggtagcttacctactacatctagagtagaagctaaagcaatggctgaaaag
cttggagctaaagttgcagttagcgtatcctctaatacggatttagtcatagccggcgtt
gatgcaggtagtaagcttaaaaaagctaaagagctgggaattaaaattattgatgaagag
gaatggcttaccatagtaaacaatgtttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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