KEGG   Rhodospirillum centenum: RC1_0135
Entry
RC1_0135          CDS       T00785                                 
Symbol
hfq
Name
(GenBank) protein hfq
  KO
K03666  host factor-I protein
Organism
rce  Rhodospirillum centenum
Pathway
rce02024  Quorum sensing
rce03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rce00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RC1_0135 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RC1_0135 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rce03019]
    RC1_0135 (hfq)
   03036 Chromosome and associated proteins [BR:rce03036]
    RC1_0135 (hfq)
Messenger RNA biogenesis [BR:rce03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     RC1_0135 (hfq)
Chromosome and associated proteins [BR:rce03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    RC1_0135 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ACI97584
UniProt: B6IQ48
Position
124968..125216
AA seq 82 aa
MSEKSQNVQDVFLNHVRKNKTPVTVFLVNGVKLQGIITWFDNFSVLLRRDAHSQLVYKHA
ISTVMPAHPIQLFEPAKETEHD
NT seq 249 nt   +upstreamnt  +downstreamnt
atgtcggaaaaatcgcagaacgtgcaggacgttttcctgaatcacgtccgcaagaacaag
actccggtgacggtatttctcgtcaatggcgtcaaacttcagggcatcattacctggttc
gacaatttctccgtcctgctgcgccgtgatgcgcactcgcagcttgtctacaagcatgcg
atttcgacggtgatgccggcacacccgatccagctgttcgagcccgccaaggagacggaa
cacgactga

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