KEGG   Ruminococcus champanellensis: RUM_06640
Entry
RUM_06640         CDS       T02600                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rch  Ruminococcus champanellensis
Pathway
rch03410  Base excision repair
rch03430  Mismatch repair
rch03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rch00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RUM_06640
   03430 Mismatch repair
    RUM_06640
   03440 Homologous recombination
    RUM_06640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rch03400]
    RUM_06640
DNA repair and recombination proteins [BR:rch03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     RUM_06640
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     RUM_06640
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RUM_06640
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1
Other DBs
NCBI-ProteinID: CBL16875
UniProt: D4LB80
Position
722161..724194
AA seq 677 aa
MKKWSITRPDEAAAGALTKGSDLEPLCAVVLAARGIRTVQAAADFLGSDELSDPFLIRDM
QEAAEVINEAVESGKPICVYGDYDCDGVTATVMLYSYLECLGADVRFYIPERSEGYGMNE
ASIRQLAQEGVSLIITVDNGIAALAEAELIAQLGMTLVVTDHHQPGECLPRAAAVVNPHR
ADCPSPYKNLCGAGVALKLIAALDGGGYDMALEQFGDLAAIGTVADIVPLDGENRFLVRR
GLEYLQNTEREGLLALIQVAGLAEKPLDAHSIGFMLAPRINAAGRFGSPTLAVRLLLCDD
PQEAESLAAQLDQLNTERKAAENAIMQQIDQKLREEPALLHARVLVLAGEGWHPGVIGIL
AARLVERFGKPCFLLSVEGDTARGSARSFGDFSVYQCLHAASGVLTHWGGHKGAGGMTLS
AADLPEFDRLVQQYAREQFPVMPVPELSALLLPPALYTPKQAAGLEVLAPFGAENPEPLF
AVVGASVTGVTSTKNGQHSRITLRYGDVNISAFWFFCKPDALPFRQGDACDLLLTIQADS
WNGKPCIRARIRDGRLSGTKQSAYFAAQASYEAYWRKEALPRAYYGRMLPARQELIRVYN
AIGQEDMPLEALYAACAGTDLNYCKFRICCDIFAERGLIALDPAAGTLRRLPVTAKVQIT
ESQVFLELHRLAENGFT
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgaaaaaatggagcattaccaggccggatgaggcagcggcgggtgcgctgacgaagggc
agtgatctggagcctttatgtgcggtggtgcttgccgcaaggggtatccgcacggtacag
gcggcggcggatttccttggctcggacgagctgtccgaccccttcttgatccgggatatg
caggaagcggcggaggtcatcaacgaagcggtggaatccggcaagcccatctgtgtgtac
ggggattacgactgcgatggagtcaccgccacggtgatgctgtactcttatctggaatgt
ctgggggcggatgtgcggttttacatacccgagcgcagcgagggctacggcatgaacgaa
gcctccatccggcagctggcacaggagggggtttccctcattatcaccgtggacaacggc
attgccgccctggcggaggcggagctgatcgcccagctgggcatgactctggtggtaacg
gatcaccatcagccgggagaatgcctgccccgggcggcggcggtggtcaatccccaccgg
gcggattgtcccagtccctacaaaaacctgtgcggcgcaggggttgccctgaagctgatt
gcggctctggacgggggcggctacgatatggcgctggagcagtttggcgaccttgccgcc
atcggtacggtggcggatatcgtacccctggatggggaaaaccggttcctggtgcgccgg
ggtctggagtatctgcaaaacaccgaacgggagggcttgctggcgctgatccaggtggca
ggtctggcagaaaagcccctggatgcccacagcatcggttttatgctggcaccccggatc
aatgccgccggcaggttcggctctcctaccctggcggttcggcttctgctgtgcgatgat
ccccaggaggcggaatctcttgccgctcaactggatcagctgaacacggagcggaaggct
gcggaaaacgccatcatgcagcagatcgaccagaagctccgggaggaaccggctctgctt
cacgcccgggtgcttgtactggcgggggagggctggcatcccggagtcatcggcattctt
gccgcccggctggtggagcggttcggaaagccctgtttcctgctttccgtggagggagac
accgcccggggctccgcccgttccttcggggatttttccgtgtaccagtgcctgcatgcc
gcatccggggtgctgacgcactggggaggacacaagggcgccggcggcatgaccctttca
gcggcggatcttccggaatttgaccgactggtgcagcagtatgccagggagcagttcccg
gttatgcccgtaccggagctttccgccttgctgctgccccccgctttgtatacacccaaa
caggcggcagggctggaggtgcttgcgcccttcggtgcggagaatccggagccgctgttt
gcggtggtgggggcatccgtcactggggtgacctctacgaaaaacgggcagcacagccgg
atcaccctccggtacggagacgtgaacatcagcgcattctggtttttctgcaagccggat
gccctgcccttccgacagggggatgcctgtgacttgctgctgaccatccaggcggacagc
tggaacggcaagccttgtatccgggcaaggatccgggacggtcggttgtccggcaccaaa
cagagcgcatactttgccgcccaggcaagctatgaagcctactggcggaaggaggcactg
cccagggcgtattacggcaggatgctgcctgcccggcaggagctgatccgggtgtacaat
gccatcggtcaggaggacatgcccttggaagcgctgtatgccgcctgtgccgggacggat
ctgaactactgtaaatttcgcatttgctgcgatattttcgcagagcggggattgatcgca
ctggatcctgcggcagggactctgcggcggctgccggtgaccgccaaggtgcagatcacc
gaatcccaggtgttcctggagctgcacagactcgctgaaaacggttttacttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system