KEGG   Methanocella arvoryzae: LRC484
Entry
LRC484            CDS       T00526                                 
Name
(GenBank) conserved hypothetical protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
rci  Methanocella arvoryzae
Brite
KEGG Orthology (KO) [BR:rci00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rci03016]
    LRC484
Enzymes [BR:rci01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     LRC484
Transfer RNA biogenesis [BR:rci03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    LRC484
 Prokaryotic type
   tRNA splicing ligases
    LRC484
SSDB
Motif
Pfam: RtcB Mur_ligase
Other DBs
NCBI-ProteinID: CAJ35431
UniProt: Q0W862
Position
2818013..2819443
AA seq 476 aa
MVNLVKVREDIYELPIDSKPGMLVPGRIFLSDLLVKDLEQDAIQQVANVATLPGIQKYSM
AMPDAHVGYGFPIGGVAAFDMENGVISPGGVGFDINCGVRLLRSPLRFEDVQGKTDALID
SLYREVPSGVGSESKFRASEDVLTQVFNHGARWAVENGYGVKADLEHCEENGEMKGADSA
KVSRKARDRGKPQLGTLGSGNHFLEIQHVEKIYDEAAAKAFGLEEGGITVMIHCGSRGAG
HQICTDYVRTLEQASRKYGIKLADRQLACAPLTSKEAQDYFAAMAAGANYAWANRQMISH
WVREAFNKQFHTDLKMDLVYDVAHNVAKYEEHTVDGEKKKLCVHRKGATRAFAPGRPELP
ATYRDIGQPVIIPGSMGSASYVLVGAQGAMEMTFGSTCHGAGRVMSRSAAKKEVHGNEIK
RELAERGIIVKAPSAAAISEEAPEVYKDIDEVVEVVHRLGISRKVARLVPLAVAKG
NT seq 1431 nt   +upstreamnt  +downstreamnt
atggttaatttagtcaaggtcagagaagatatctacgaactgccgatagactccaaaccc
ggaatgctggtcccggggaggatattcctgtccgatctgctggtcaaagacctggagcag
gacgcgatccagcaggtggctaacgttgccacgctgcccggtattcagaagtactccatg
gccatgccagacgcccacgtcggctatggcttccccataggtggcgtcgccgcgttcgac
atggaaaatggagtgataagccccggcggggtaggcttcgacatcaactgcggcgtccga
ctattacgtagtccgctgcgattcgaggacgtgcagggcaagactgacgccctcatcgac
agcctctaccgggaagtgccatccggcgtgggctcggagtcgaagttccgggcctccgag
gacgtcctcacccaggtgttcaaccacggcgcccggtgggcggtagagaacggctacggg
gtgaaagccgacctggagcactgcgaggagaacggcgagatgaagggcgccgactcggca
aaagtatcccggaaagcccgggaccggggcaagcctcagctcggcacgctcggcagcggc
aaccacttcctcgagatccagcacgtggagaagatctacgacgaagctgcggcaaaggct
ttcggcctcgaggaaggcggcatcacagtcatgatccactgcggctcccggggtgccggc
caccagatctgcactgactacgtccggacgctcgagcaggcttcccgcaagtacggcatc
aagctcgccgacagacaactggcctgtgccccgctgacctcaaaagaggcacaggactac
tttgcggcgatggccgccggtgccaattacgcctgggcaaaccgccagatgatctcccac
tgggtcagggaagccttcaacaagcaattccacaccgacctgaagatggacctcgtctac
gacgtagcccacaacgtggccaagtacgaagagcacacggtcgacggcgagaagaaaaaa
ctctgcgtccaccgcaaaggcgccaccagggccttcgcacccggcaggccggaactgccc
gccacgtaccgggacatcggccagcccgtgatcatcccgggcagcatgggcagcgcctcc
tacgtcctcgtgggagcgcagggcgccatggagatgaccttcggcagcacctgccacggc
gcaggcagagtcatgagccgctctgccgccaagaaagaggtccacggcaacgagatcaag
cgcgagctcgccgagcggggcatcatcgtcaaggcccccagcgccgcagcgatctccgaa
gaggcccccgaagtttacaaggacatagacgaggtggtcgaagtagtgcacaggctgggt
atctcccgaaaggtcgcccggctcgtgccgctggcagtggccaaaggataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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