KEGG   Rosa chinensis (China rose): 112180849
Entry
112180849         CDS       T06020                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112180849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rcn03021]
    112180849
Enzymes [BR:rcn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     112180849
Transcription machinery [BR:rcn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     112180849
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 112180849
NCBI-ProteinID: XP_024175179
Position
7:17538890..17551237
AA seq 1455 aa
MEDELYNEELVPCACITGVHLNVSTREDTEKISTLLIEAAAQVNDPKLGLPNPTNQCSTC
GTQDIKSCDGHFGSIKFPCTILHPYYLPEVALILNKICPACKTIRQGVRVKGSERRGCRY
CFGGSSDYPRMKFKVSSRELFRRSTIIVEAVGKLPPDYWDFIPKDPQHDETHTKPNRRVL
SHAQVHFLLNDVDPDFITKFVPTTSSLSLDCFLVTPNCHRVTEVMYSFNNGQSLMFDDRT
RAYRKLVDFRGTANELGSRVLDCLKISKINKDKTGRDSISVEQQKIKDSPSRTSGLRWIK
DVVLGKRSDHCFRTVVVGDPNIKLSEIGIPRHIAEKMQISENLNQYNLDKLYAFCQLRLG
HQGRGDIHVRRNDSLVRISNLEELEMGDIIYRALSDGDVVLINRPPSIHQHSLIALTAKI
LPVNSVVSINPLCCSPFRGDFDGDCLHGYVPQSVDTRVELTELVALDKQLVNGQSGSNLL
SLSQDSLTACYLIMEDGTLMNKFQMQQLKMLCPPELPSPAIIKDPSGNSVSWTAKQIISM
FLPANFNYAFPSNGVHISNGELLASSEGSSWLRDTSGNLFQSLIEHCPGQILDIFFTAQG
VLCEWLSMRGLSVSLSDLYIASDTCSRKNLVEEIFYGLQEAEEACTIRQLMLDSCQEFLM
GYAEETKSPLTFGSEHFCYQKQKSAALSQVTVDAFKEGFRDVQNLAYKYAREDNSLLAMF
KAGSKGNMLKLVQHGMCLGLQHSLVPLSFKFPNQLSCDAWNDQKARGIVQEVGRAFESIE
SYIPSTVVKSSFLTGLNPVECFVHSVTSRDGSFSNNAELPGTLNRKLMYFMRDLHTAYDG
TVRNAYGNQLVQFSYDNDEGISTADSTTNSSYAKSVIDCGGGQPVGALSACAISEAAYSA
LDQPVSLLETSPLLNLKNILECGSKKRSAKQTMSLFLSEKLGRPRHGFEYGALEVKNHLE
GLTFSDIVSTVMIMFSSQTGSKMHFSPWVSHFHISKEIVRRRRLNVRSIIEALYARCNSA
PVELKIILWNLKITRNKECDCCSTPNDTFCISVTLTEKQDNSSEELDKKQDKSSEELDKT
RVLVIPFLLKTVVKGFLEIKKVDIIWNDRTGSPGELYLRVSMSGKTRRGATFWNMLMDDC
LPVMDMIDWSRSHPDNVDDFCTAYGIDVGWKHFLNKLESATVDIGKTILPQHLLLAADCL
SATGEFVSLNAKGIAQQLEHASVTAPFMQACFSTPGPCLVKAAKAGVVDNLQGSLDALTW
GNTPSLGSGGQFDIIFAGEGSVSSKPFDVHDMLSRQISSNPQNVFEMSDAPIHLSDKYVA
PHVYKYGLLCKLKSITKSVLRETFTIQDIDRLSQTLKNILHKYDINESINEMEKKDLMTA
LEFHPHRDRKIGLGIKDIKVGQHPNHENARCFMLVHTDGTIEDVSYHKCIIGAFDIIAPH
RAKGYRLRHLSRGPR
NT seq 4368 nt   +upstreamnt  +downstreamnt
atggaagatgaattgtataatgaagaactagtgccatgtgcttgcataactggggtacat
ctaaatgtttccactcgggaagatacggagaaaatatcaacattattaatcgaggcagct
gcccaggttaatgatccaaagttgggacttccaaatccaacgaatcagtgttctacttgt
ggtacccaagatataaaatcctgtgatggtcattttgggtccatcaagtttccgtgcacg
atactccatccatactatctaccggaagttgctcttattttaaacaagatttgcccggca
tgtaaaaccatcaggcaaggtgtaagggtcaagggatctgaacggaggggctgcagatat
tgctttggaggttcatcggattaccctagaatgaagttcaaagtttcttctagagagctt
ttcagaagaagtacaataatagtagaagcagttggaaaattgcctcctgattattgggac
ttcattcccaaagatccccaacatgatgaaacacacacaaaaccaaatagaagagttcta
tctcatgcccaggttcattttttgttgaatgatgttgatccagatttcatcacaaagttt
gttccaacaaccagctcactttctttggactgtttccttgtcacaccaaattgtcatcgt
gtgacagaagttatgtattcatttaataatgggcagtcattgatgtttgatgatcggact
agagcttacaggaaactagtggatttcagaggcaccgcaaacgagctgggttctcgtgtt
ttggactgcctgaaaatttccaagataaacaaagacaaaacaggcagagattcaatttca
gttgagcaacaaaagattaaggattctccgtccagaacatccggcttgagatggataaaa
gatgttgttcttggaaagagaagtgatcactgttttcgaactgttgtcgttggtgatcca
aacatcaagctgagtgagattggcataccccgccatattgcagagaaaatgcagatctct
gagaatctgaaccaatataaccttgacaagttgtatgcgttttgccagctacgccttggc
catcaggggagaggtgacatacatgttcgtagaaatgatagtctggttaggataagtaat
ttagaagaactggagatgggagatattatatacagggcgttgagtgatggagatgttgtg
ttgataaataggcctccatcaatacatcaacactccctaatagctttaactgcaaagatc
cttccagtaaactctgtagtgtcgataaatccactgtgttgctctccttttcgtggtgat
tttgatggtgattgccttcatggttatgttcctcaatcagtggataccagagtcgagctt
acagagcttgttgctttagataagcaattagttaatgggcagagtggttccaaccttctt
tctctcagtcaagatagtttaactgcttgctatctcatcatggaagatggcaccctgatg
aataagtttcaaatgcaacaactgaaaatgctttgtccccctgaactgccatcaccagcg
ataatcaaagatccttctggtaactccgtttcttggacggcaaagcagataatcagcatg
tttctacctgcaaattttaattatgcatttccttcaaatggcgtgcatattagcaatgga
gagcttctagcttcttctgaaggttcttcttggctgcgagacaccagtgggaatcttttc
caaagtctcatcgaacattgccccggtcagatactggacatcttctttactgctcaggga
gttctatgtgagtggttgtcaatgaggggcttgagtgtttctctctcagacttgtatatc
gcgtcggatacatgttcaaggaaaaacttggtggaggaaatcttctatgggttacaagaa
gcagaggaggcatgtactatcagacagttgatgcttgattcttgtcaggaatttcttatg
ggctatgctgaagagacaaaaagccctttgacttttggttcagaacatttttgttatcag
aagcagaaatctgctgcacttagtcaggtcacggtagatgctttcaaagaaggtttccgg
gatgtccaaaatttagcatacaaatatgcccgtgaggacaactcgttgctggctatgttt
aaggctggaagcaagggtaatatgctgaaattagttcagcatggtatgtgccttggtttg
cagcattcactagttcccttatcattcaagtttccgaaccagctctcatgtgatgcatgg
aatgatcaaaaagcacgtggtatcgttcaggaggttggaagagcttttgaatccatcgag
tcatatatcccatccactgtcgttaaaagttcgttcttgactgggctgaatccggtcgaa
tgctttgttcattcagtcacgagtcgagatggttcttttagtaataatgcggaacttcct
gggactctgaatcgaaagctcatgtatttcatgcgtgatttgcatactgcttatgacgga
acagttagaaacgcatatgggaaccagctggttcagttctcctatgataatgacgagggc
atatctactgcagatagcaccacaaacagctcatatgcaaagagtgttattgattgtggt
ggcggccaacccgttggtgcattgtctgcttgtgcaatatctgaagctgcatacagtgct
ttagatcagccagttagtctacttgaaacttctcctctgctaaatctgaagaacattttg
gagtgtggttcaaagaaaaggagtgctaagcaaactatgtcattatttttatctgagaag
cttggaagacctaggcatggtttcgagtatggagcgctagaagttaaaaatcatctagag
ggactcacattttcagacatcgtttctactgtcatgataatgttctcctcacaaactggc
agcaagatgcattttagtccttgggtttctcactttcatatatctaaggaaattgtacga
agaagaaggctgaatgtgcgatctattatagaggcactttatgcaagatgcaactccgct
ccagtggagttgaaaattatcctttggaatttgaagatcacaagaaataaggaatgtgat
tgctgcagcacacctaatgatacattttgcatcagtgtcacactgactgaaaagcaagac
aattcttctgaagaactggataaaaagcaagacaagtcttctgaagaactggataaaact
cgagtcttggtgataccattcttgcttaaaacagtagttaaaggttttctggagataaaa
aaggtggatattatatggaatgatcgaactggttcacctggtgaactctacttgagagtt
tctatgtcaggaaagaccagaaggggggctaccttttggaatatgcttatggacgattgt
cttccggttatggatatgattgattggtcacgaagtcatccagataacgtcgatgacttc
tgcactgcctatggaatagatgttgggtggaaacatttccttaataagttggagtctgca
accgtagatattggaaagacaattcttccgcagcatttgcttcttgcagcagattgtctg
tcagccaccggcgagtttgtcagcttaaacgcaaaaggcattgctcaacaattggaacat
gcatctgtcacagccccttttatgcaagcttgcttttctactcctggtccttgcttggtt
aaagctgctaaggctggagtggtggataatctccaggggagtttggacgcattgacatgg
ggaaatactccgtccttgggaagtggtggacagtttgatattatatttgctggggaggga
tctgtgtcttctaagccatttgatgttcatgatatgctgagcagacaaatcagttccaac
ccccagaatgtatttgaaatgtctgatgctccaattcatctatctgacaaatatgttgct
ccacatgtgtacaagtatggtcttttgtgcaagttgaagagtattaccaaatcagtctta
agagaaacttttacgatccaggatattgatagattgtctcaaaccttgaagaatatattg
cacaagtatgacatcaatgaaagcataaatgagatggagaagaaagatttgatgacggct
ttagaatttcaccctcatagggatcgtaagatcggattaggaatcaaagatataaaggtt
ggccagcaccctaaccatgagaatgcacgatgcttcatgctagtacatacggatgggacg
attgaagatgtttcgtaccacaagtgcatcattggtgcttttgatatcatagctcctcat
agggcaaagggctatcgcctgagacatttgagccgtggtcctcggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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