KEGG   Rosa chinensis (China rose): 112194924
Entry
112194924         CDS       T06020                                 
Name
(RefSeq) polygalacturonase isoform X1
  KO
K01184  polygalacturonase [EC:3.2.1.15]
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn00040  Pentose and glucuronate interconversions
rcn01100  Metabolic pathways
Module
rcn_M00081  Pectin degradation
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00040 Pentose and glucuronate interconversions
    112194924
Enzymes [BR:rcn01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.1  Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
    3.2.1.15  endo-polygalacturonase
     112194924
SSDB
Motif
Pfam: Glyco_hydro_28 Pectate_lyase_3 Beta_helix End_N_terminal
Other DBs
NCBI-GeneID: 112194924
NCBI-ProteinID: XP_024190947
Position
3:27801684..27808122
AA seq 459 aa
MMSLKKFLLSIFIIIIINIISSISCDRSTNLQENTLEDFVDEASGTGYDSQAYPSYWSMI
DDSKDLIEQSTDDVLTLKSSDQVAVTTVSVHDFGAKGDGETDDTEAFVKAWKVACSSKNA
AVLVVPQKIYWLKPIRFSGPCLSQLMVQIVGTLEASDDRSDFRQDGKHWLIFDSVRKLLL
DGGGTINGNGKEWWQNSCKINKSKPCQDAPTALAFYKCKDLIVKNLKIQDAQQIHLSFQK
CMNVLASNLSITAPEKSPNTDGIHVTNTQDILITTSIISTGDDCISIVSGSEKVQAMNIT
CGPGHGISIGSLGSGKSEAYVSEVALYGAKLIGTTNGVRIKTWQGGSGSANNITFENIEM
LDVTNPILIDQYYCDSKKPCKEQKSAVQVQNVLYKNIKGTSASDVAIKFDCSKNFPCQGI
VLQDIKLEHGGGKTAKALCNNINFTSIGVVSPLCYQAKL
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgatgtcacttaaaaaatttcttctctcaatattcatcatcatcatcatcaatatcatc
tcttcaatttcatgtgacagaagtactaatttgcaagagaacacacttgaggattttgtt
gatgaagcatcaggtactggatatgattcccaagcgtatccttcatactggagcatgatt
gatgacagcaaggacttgatcgagcaaagtactgatgatgtcctcactttgaagagctct
gatcaagtggcagttaccacagtcagtgttcatgattttggagctaagggtgatggagaa
actgatgacacagaggcgtttgtgaaggcatggaaggtagcttgttcgtctaagaatgca
gctgttttggtggtgcctcagaagatctattggcttaaaccgattagattttcaggtcct
tgcttatctcaattgatggtgcagattgttggtaccttagaagcgtcggatgatcgatct
gacttccgccaagatggtaaacactggcttatttttgatagtgttcggaagttactgctt
gatggtggtggaaccatcaatggcaatggcaaggaatggtggcagaactcatgcaaaatc
aataaatctaagccatgccaggatgcaccaacggcacttgcgttctataaatgtaaggat
ttgatagtgaagaatctaaagatacaagatgctcagcaaattcatttgtctttccagaag
tgcatgaacgttctagcttccaatctctcaattactgcaccagagaaaagccccaacacc
gatggaattcatgttacaaatactcaagacatactcatcacaacctctattatatccact
ggtgatgattgtatttcaattgtaagtggatccgaaaaggtgcaagcaatgaacataacc
tgcggacctggacatggaatcagtatcggaagcttgggatctggaaaatcagaagcttat
gtttctgaagttgctctatatggagctaaactaattggaaccacaaatggagtcaggatc
aagacttggcagggaggatctggtagtgcaaacaacatcacatttgagaacattgaaatg
cttgatgttaccaaccccatcctaatagatcaatactattgtgacagcaagaagccatgt
aaagaacagaaatcggcagttcaagtgcaaaatgtattgtacaagaacatcaaaggaaca
agtgcctcagacgttgctattaagtttgattgcagcaagaactttccttgtcagggtatt
gtgttgcaagacattaaacttgagcatggaggagggaaaacagctaaagcattatgcaac
aatattaatttcactagcataggagttgtttcccctctctgttatcaagcgaaactatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system