KEGG   Rosa chinensis (China rose): 112200158
Entry
112200158         CDS       T06020                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
rcn  Rosa chinensis (China rose)
Pathway
rcn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112200158
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rcn03041]
    112200158
Spliceosome [BR:rcn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    112200158
 Complex C
   U5 SnRNP specific factors
    112200158
SSDB
Motif
Pfam: WD40 NBCH_WD40 ANAPC4_WD40 Nbas_N RMC1_N DUF5074
Other DBs
NCBI-GeneID: 112200158
NCBI-ProteinID: XP_024196945
Position
4:26322228..26325565
AA seq 344 aa
MMQFAPSEGENALSVVGPRPMDLSTYNARPASGPNGKQRTSSLEAPIMLLTGHQSAIYTM
KFNPAGTVIASGSHDKEIFLWNVHGECKNFMVLKGHKNAVLDLHWTTDGSQIVSASPDKT
VGAWDVETGKRIKKMAEHSSFVNSCHPARRGPPLVVSGSDDGTAKLWDMRVRGAIQTYPD
KYQITAVSFSDASDKIFTGGIDNDIKVWDLRKAEVLMTLQGHQDMITGMSLSPDGSYLLT
NGMDCKLCIWDMRPYAPQNRCVKIMEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIW
DTTSRRILFMLPGHTGSVNESVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgatgcagtttgctccaagtgagggtgaaaatgctttgtctgtagttggtcccaggcca
atggatttgtctacatataatgctcgccctgcatctgggcctaatggaaaacaaaggact
tcaagtttggaggcaccaatcatgctgctgactggtcatcaaagtgctatatacacaatg
aaatttaaccctgccggaacagtcatagcatcggggtctcatgacaaggaaattttctta
tggaatgttcatggggaatgcaaaaacttcatggttttaaaggggcataagaatgctgtg
ttggatcttcactggacaactgatgggtctcagatagtatcagccagtccagacaaaact
gtgggggcatgggatgttgagacgggaaaaagaattaaaaagatggcagaacactcttca
tttgtgaattcttgtcatcctgctcggagaggaccgcctcttgttgtcagtggatctgat
gatggaactgccaaactatgggatatgcgtgtgaggggtgccatccaaacatatcctgat
aaataccaaatcacagcagtcagcttctcggatgcatcagataaaatctttacaggaggt
attgataatgatattaaggtttgggacttgcgcaaggctgaagtactgatgacacttcaa
ggacatcaagatatgataacaggtatgtcattgagtcctgatggctcttatcttctgact
aatggaatggactgcaaactctgcatttgggatatgcgcccatatgcaccacaaaatcgt
tgtgtaaagataatggaagggcaccaacacaactttgaaaagaacttgttgaaatgtagc
tggtcacctgatggaagcaaggtcacggccggcagttctgataggatggtctacatatgg
gatactacttctcgacgcatcttgtttatgctgccgggccacactggatctgtcaatgag
tccgtcttccaccccaacgagcccattattggatcttgcagtagtgataagcagatatat
ctgggggaaatctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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