KEGG   Ricinus communis (castor bean): 8262708
Entry
8262708           CDS       T01087                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase FANCM isoform X1
  KO
K10896  fanconi anemia group M protein
Organism
rcu  Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rcu03400]
    8262708
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    FA core complex
     8262708
SSDB
Motif
Pfam: Helicase_C DEAD ResIII Spt5_N FANCM-MHF_bd
Other DBs
NCBI-GeneID: 8262708
NCBI-ProteinID: XP_015579449
Position
2:10107958..10124936
AA seq 1367 aa
MTSTSPLRINDDEDDDEFDWEAAVREIDVACENANLQTEPSSSRSENNLSNVILKKPGAC
KQSTLERFIGKTVRPDPPPGNPTVIDDENGVSCIEIDAEAAKTWIYPVNVPVRDYQLAIT
KTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPDGKIVFAAPSRPLVMQQIEACHNIVG
IPQEWTIDMTGQLSPAKRACFWKTKRMFFVTPQVLEKDIQAGTCLVKHLVCLVIDEAHRA
LGNYSYCVAVRELMAVPIQLRILALTATPGSKQQAIQHIIDNLHISTLEYRNEGDADVVP
YVHNRKIELIEVALGKDAVDINKQLLAVIHPYVARLSAVGLLQNRDYKTFSPPDLLNSRD
KFRRAPPSELPQNKYGEIEAYFAGLITLYHIRKLLSSHGIRPAYEMLEEKLKQGSFARLM
SKNEDIRKVKLSMQQSLSHGAPSPKLSKMLEILTDHFKAKDPQNSRVIIFSNFRGSVRDI
MDALTNIENVVKATEFIGQSSGKALKGQSQKVQQAVLEKFRAGKYNVIVATSIGEEGLDI
MEVDLVICFDANVSPLRMIQRMGRTGRKHDGRVVVLACEGSELKGYMRKQANSRAISKHM
HNGGISSFSFHSSPRMIPHVLKPEVQFVKLSIEQYIPRGKKLKDDNAIRTPVFESKLNVA
EASLIAKYFHPTSEKSWRPSLIAFPHFQAFPSRVHKVMHSCRTDMLIDTMQCLQNLLFSR
ERGDLIIEDEIASGKCLGDNKENNNKEDPHLWVDSPSTKPQEKVEDSEVSPLKTPRSEKH
NVLDLHGQSSPAHAYLFSSDFVSVDALGKVIILSVPVVPLKEAIHCKFTSPSTQNPCHLK
APDENDKELTVQNKSRPDLITSLAQHEINVALTIPKSNAQEDKISNRVEVIPETPLVKNT
LLSGGDFVDETLDCLEIKAPPLQADEYNNIEWSPRLTNMIQSGVVPESPINDIGWSNSKG
RSKFLTTDVISPMKSCNDLQPRSPSQWKNERAINNSACQRNLLVSSINNAMQTPLVKENN
VARTGGCTSISPAADETYTNCSKDWVLSSGDKSENVKQVHKFRRLRKIGDIERNRNAQDK
KEKTLVNLDRSFSGISPNQIRRGKGKMKQNGKIMAFIEEEAEVSSEAEISDDEEDEQGNS
SYDDSFIDDRTNPTAASTQAENSRVDMMAIYRRSLLTQSPMERESNSFVTRTPDSGTSIS
RMNESKSSSVKTYSIQTPQTDSENKSVGKDSDFFPINTDRMSAAMPRVTTNSMQENETKL
ETRKRKLSFFQSGSIPAINLEQEFSLQPNAARKDTFLQDPVQNSDANGEIFHDDQFFANL
DLDAVEAQATLLLKHRSELSVQKHDAVSVSSIQNFDLQNSPSFDLGI
NT seq 4104 nt   +upstreamnt  +downstreamnt
atgacctccacaagtcctctacgcatcaacgacgacgaggatgacgacgaatttgattgg
gaggcagctgttagagaaattgatgtcgcatgtgaaaacgcaaacctccaaaccgaacct
tcttcttcacgttctgaaaataatttatctaatgtgattttgaaaaagcccggtgcttgt
aagcaatctacactagagaggtttattgggaagacagttaggccggacccaccacctgga
aatccaactgttattgatgatgagaatggggtaagctgcattgaaattgatgccgaggca
gctaaaacttggatatacccagttaatgttccagttcgtgattatcaattggcgataaca
aagacggcattgttttcaaatacattggtggcattaccaactgggcttggaaagacactt
attgctgcagttgttatgtacaactattttaggtggtttcccgatgggaaaatagtattt
gctgctccatctcgaccacttgtgatgcaacaaattgaagcatgccataatattgtggga
ataccacaagaatggacaattgatatgacaggtcagctaagccctgcaaaaagggcatgc
ttttggaaaactaaacgaatgttctttgttactccacaagttctggagaaggatattcaa
gctggcacatgtttggtgaaacacctggtgtgtttggtcattgatgaggctcatcgtgca
ttaggaaattattcttattgtgtggcagttcgtgagttaatggcagtaccaattcagcta
agaatacttgctttgacagcaacaccaggatcaaagcaacaggccatccagcatattatt
gacaatctacatatttcaacacttgaataccgcaatgaaggtgatgctgatgtcgttcca
tatgttcacaacagaaagattgaattgattgaggttgcactgggaaaagatgctgttgac
ataaataaacagctattggcagtgatacatccatatgtggccaggctttctgcagttgga
cttctccaaaatagagactataagactttcagcccccctgatttacttaattcaagggat
aaatttcgtcgagcaccaccatcagaacttccccaaaacaagtatggagagattgaagct
tattttgcaggtcttattactctttatcacattcgtaagctcctttcaagtcatggaata
cggccagcatatgagatgctggaagaaaagttgaaacaagggtcatttgcaagactgatg
tccaaaaatgaagacattagaaaagtaaagctttcaatgcagcaaagcttgtcccatggt
gcacctagtcccaaattgtcaaaaatgttggagatactgacggaccatttcaaagcaaag
gacccacagaactcaagagtgataattttctctaattttagaggaagtgtaagggatata
atggatgcattgacaaatattgagaacgtagttaaagcaactgagtttattggtcaaagc
tcaggaaaagcattgaaaggccagtcacaaaaagttcaacaggctgttttggagaaattc
cgagctggtaaatacaatgttatcgttgcaacatcaattggtgaagaaggtctggatatt
atggaagttgatctcgtaatatgttttgatgctaatgtgtcaccactaagaatgattcag
cgcatgggaagaactggtaggaagcatgatggacgggttgtagttttagcttgtgaaggg
tctgagctgaagggttatatgcgaaaacaagcaaatagcagagccattagtaaacacatg
cacaatggtgggataagtagcttcagtttccattctagcccaaggatgataccccatgtt
cttaaacctgaagtccaatttgtcaagctatcgattgagcaatacatacctcgtgggaag
aaactgaaggatgataatgctatccggacacctgttttcgaatccaaactaaatgttgca
gaggcttctttaattgccaagtacttccatcccacaagtgaaaaatcttggcggccatct
cttattgcctttcctcatttccaggcattcccttccagagtgcataaagtaatgcactct
tgtagaacagacatgctgattgatacaatgcagtgtttgcaaaatctactgttctctagg
gagagaggagatcttataattgaggatgaaatcgcttcaggcaagtgcttgggtgacaac
aaagagaacaacaacaaagaagatccacatctatgggttgattctccaagcaccaaacca
caggaaaaagtagaagattctgaagtatcacccctgaagaccccgagaagcgagaagcat
aatgtgctggatctccatggccaaagctctccggctcatgcttacctgttcagttctgac
tttgtgtctgtagatgctcttgggaaggtcataattttgtctgtccctgtagttccattg
aaagaggcgatacattgtaagtttacaagtcctagcactcaaaatccttgccatttgaag
gcaccagatgaaaatgacaaggagctgacggtgcaaaacaagtctagaccagatctgatt
acatctttggctcaacatgaaataaatgtggctttaacgataccaaagtctaatgcccag
gaagacaaaatatcgaatcgtgttgaagttattcctgagactccattagtgaagaatact
cttttaagtggaggagattttgtggatgaaacacttgattgcttggaaatcaaggcacca
cctttgcaggctgatgagtacaataatattgagtggagtcctaggctaactaatatgatc
caaagtggtgtggttccagagtctccaatcaatgatattggatggtctaatagtaaagga
aggagcaagtttcttactacagacgtcatttcacccatgaaatcgtgtaatgatctgcag
ccaaggtctccaagtcagtggaagaatgaaagagctatcaataatagtgcctgtcaaaga
aatctcttagtttcctctattaataatgcaatgcaaactcctttggttaaggagaataat
gttgccagaacaggtggatgcacctcaatttctccagctgctgacgaaacttatactaac
tgtagcaaagattgggttttgagttctggagacaagtcagaaaatgtcaaacaagtacac
aagttcagaagattgcggaaaattggagatattgagagaaataggaatgcacaagacaaa
aaggaaaaaacattagtgaaccttgatagatctttttctggtattagtcctaaccaaatt
aggcgtggtaaaggtaaaatgaaacaaaatggcaaaatcatggccttcattgaggaggaa
gctgaggtgtcttctgaagctgaaatatcagatgatgaggaagacgagcaaggcaacagt
tcatatgatgatagtttcatagatgacaggacaaatccgacagctgcaagcacgcaagct
gaaaatagtagagtggatatgatggcaatttacaggcgatctttgctcacccaatcacca
atggagagggaatcaaattcttttgtcaccagaactcctgatagtgggacttccattagc
agaatgaatgaaagcaaaagttcctcagtcaagacatattcaattcagaccccgcaaact
gattctgaaaacaagtctgttggaaaggattcagatttctttccaataaacactgacaga
atgtcagcagcaatgcctcgtgtaaccactaatagtatgcaagaaaatgagacaaagctt
gaaactaggaaaaggaaattgagtttttttcaatcaggatctattcctgctatcaacctg
gagcaagaattcagtttgcaaccaaatgctgccagaaaagatacattcctgcaggatcca
gtgcaaaactctgatgccaatggggaaatttttcatgacgatcaattctttgccaacctt
gatcttgatgctgtggaggcacaagctaccttgcttctcaaacacagatcagagttatca
gtacaaaagcatgatgcagtttcagtgtccagcatacaaaattttgaccttcagaattct
ccatcatttgatcttgggatatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (41)   

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