KEGG   Ricinus communis (castor bean): 8262844
Entry
8262844           CDS       T01087                                 
Name
(RefSeq) dicer-like protein 4 isoform X3
  KO
K11592  endoribonuclease Dicer [EC:3.1.26.-]
Organism
rcu  Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rcu03036]
    8262844
Chromosome and associated proteins [BR:rcu03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    8262844
   microRNA pathway
    RISC loading complex
     8262844
SSDB
Motif
Pfam: Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer DEAD Helicase_C DND1_DSRM ResIII dsrm PAZ IstB_IS21
Other DBs
NCBI-GeneID: 8262844
NCBI-ProteinID: XP_015577462
Position
3:complement(24558540..24604439)
AA seq 1642 aa
MPDGEADISPDDSSSICTVNRIAGDDDGDECNSMPQQPEKDPRKIARKYQLELCKKALEE
NIIVYLGTGCGKTHIAVLLIYELGHLIRKPLKNVCVFLAPTVALVQQQARVIEQSIDFKV
GVYCGNSNHLKSHRDWEKEIEQNEVLVMTPQILLHTLGHSFIKMELISLLIFDECHHAQV
QSSHPYAEIMKVFYKTGDGKFPRIFGMTASPVVGKGASNQANLPKSINSLENLLDAKVYS
VEDNEELELFVASPVVRIYLYAPVANEKSSSYMTYFSKLEEIKRKCLLELHKKADSCQSL
HGLQNAKKVFIRMHDNVVFCLENLGFWGALQACKILLSDDHFEWNALIEAEGNIDASVCD
KYLAQAANMFASVCTKDCIAFDLSSVEVLTEPFFSRKLLRLIGILSTFRLQPNMKGIVFV
NRIVTARSLSYVLQNLKFLISWKCDFLVGVHSGLKSMSRKTMNSILEKFKTGKLNLLIAT
KVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNQKELDLIERFR
RDEDRMNMEISSRTSNETFVSIEEKVYKVDESGACISSAYSISLLHHYCSKLPHDEYFDP
KPQFFFFDDLGGTICHIILPANAPVHQIVGTPQSSREAAKKDACLKAIEQLHKLGSLSNF
LLPHEKDVNEESMLASSEPENNEGEGVRGELHEMLVPAVFKESLTSSENWINLHSYFIKF
CPVPEDRIYKKFGLFIRAPLPLEAEQMELNLHLACGRYVTTKLVPLGCLAFHRDEITQAI
YFQEMFLKVILDRSDFVPEFVTLGKNSFFESSPSFYLLLPVLLCDHGNRVTVDWETVGRC
LSSPVFRCVEKECLPSDDCLQLANGCRSIRDIENSLVYIPHKKHFYFITNIDRGKNARSP
HKCSSTSSYMEFLIQRFGIQLKYPEQPLLQAKPLFSLHNLLHNRRKEDSAVTQELDEYLI
DFPPELCELKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKSLLSASFSEGAEVTAYRI
LEALTTERCQERLSLERLEILGDAFLKFAVGRHLFLLHDTLDEGELTRKRSNAVNNSNLL
KLASRRNLQVYIRDQPFDPRQFFALGHPCPVICTKESEGSIHSSNRSNAKGQENTIEVRC
SRGHHWLYKKTIADVVEALVGAFIVDSGFRAATAFLKWLGIRVNIEASDVTKVCLASRTF
MPLAPSIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITS
YLFSVYPKLKPGLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKR
PAVEKDSLEGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLLNP
FRELHEFCESHKWKLQFPTLKRDMNFLVEAKVTGKDICLDASANNSNKKEAIRIASEQII
VKLKDQGYIRKSNYLEEVLRSGQKTDAKLIGYDETPIDITAHDPIGLQNLKIQDPSCSDF
NPKIRSMSKLTNTCSPCFIAANIQPPSPSVMVGGQPSATVAYPTSDMDKPTSDGSHYGSA
KSRLHDICAANCWKPPLFECCYEEGPSHLKSFSYKVIVEIEAAPDMILECFGAPREKKKA
AAEHAAEGALWYLQHVGYLTVK
NT seq 4929 nt   +upstreamnt  +downstreamnt
atgcctgacggtgaagctgacatttcccccgatgatagtagcagcatttgcactgtcaac
agaatcgctggtgatgatgatggagatgagtgcaactctatgcctcaacaacctgagaag
gatccaagaaaaatcgctagaaaatatcagttggaattatgcaagaaggctctggaggag
aatataattgtgtatctaggaacaggttgtggcaaaactcacattgctgttttgcttatt
tatgagttgggtcacttgataaggaaacctttgaagaatgtatgtgtttttcttgcgcca
acggttgcacttgttcaacaacaagccagggttatagaacaatctattgatttcaaggtt
ggggtttattgtgggaattccaaccacttgaagagccatcgtgattgggaaaaagagata
gaacaaaatgaggttcttgtcatgactccacagatactactgcataccttaggtcacagc
ttcatcaagatggagttaatttctcttttgatttttgacgaatgccatcatgctcaagtc
caaagtagtcatccttacgccgaaatcatgaaagtcttctacaaaactggcgatggaaaa
tttccccgtatatttggcatgactgcatctccagttgtggggaaaggtgcttctaatcaa
gctaatttacccaaaagcatcaatagtcttgaaaatttacttgacgccaaggtttattct
gttgaagacaatgaagagctggaactgtttgtagcatctcctgtagttaggatatactta
tatgctcctgttgcaaatgaaaaatctagctcctatatgacttattttagtaaactggaa
gagataaaacgcaagtgccttttagaacttcacaagaaggcagattcctgtcaaagtctt
cacggtcttcaaaatgccaaaaaggtgtttattagaatgcatgataatgtggtattttgc
ttggaaaatcttggtttttggggagcattacaagcttgtaaaattcttttaagtgatgat
cactttgaatggaatgcactaatagaagcagaagggaatattgatgcctcagtttgtgat
aaatatctagctcaagctgcaaatatgtttgcttctgtttgcacaaaagattgtattgca
tttgacctatcaagtgtggaggttttgaccgagccatttttctcaagaaagcttttacgc
cttattggaattctttccaccttcaggttacaaccaaatatgaagggtatagtttttgta
aataggattgtcactgcgagatccctttcttacgtgttgcaaaatctcaagtttttaata
tcttggaagtgtgattttcttgttggggtccactctggactaaagagcatgtctcgaaaa
accatgaatagcatccttgagaagttcaagactggaaagttgaatttattaattgctacc
aaagtgggtgaagagggacttgatattcagacatgctgtcttgttgtacggtttgatctg
ccagaaactgttgctagctttatacaatcaagaggtcgtgcacgcatgccacaatctgaa
tatgcatttttggtggacagcggcaaccagaaggagctagatttgatagaaaggtttaga
agagatgaagatcgaatgaatatggaaatatcttccagaacatctaatgagacatttgtt
agtattgaggaaaaagtgtataaagttgatgaatctggtgcttgcatcagttctgcatat
agcatatcattactccatcattattgctcgaaacttccacatgatgagtattttgatcca
aagccgcaattcttcttttttgatgatttagggggaactatttgccacattatcttgcct
gcaaatgctccagtgcaccaaattgttggtacaccacaatcttctcgagaagctgctaag
aaagatgcttgtctgaaggccattgaacaattgcataaactaggctcattgagcaatttt
cttttgccacatgaaaaagatgtcaatgaggagtcaatgttagcatcatctgaaccagaa
aataatgaaggtgagggtgtccgtggcgaactgcatgagatgctagttcctgctgtattt
aaggaatcattgaccagctctgagaactggatcaatctacattcttattttataaaattt
tgtcctgtgcctgaggacaggatctataaaaagtttggtctttttattagagcacctcta
cctctagaggcggagcaaatggaacttaatcttcaccttgcctgtggtagatatgtgaca
acaaagcttgtcccattaggttgtttggcatttcacagggacgagatcacgcaggcaata
tattttcaagagatgttcttgaaggtcattcttgaccgatcagactttgttcctgaattt
gttaccttggggaagaattctttttttgaatcaagcccgagtttctatctgttgcttcca
gtccttctatgtgatcatggaaatagagtgacagtagattgggagactgttggaagatgc
ttatcgtctcctgtttttaggtgtgtggaaaaagaatgtcttccttcagatgattgtttg
caacttgctaatggttgtagaagtataagagatattgagaatagtttagtgtacatcccc
cacaagaaacacttctacttcattactaacattgatcgtggaaagaatgctcgtagccca
cacaaatgttcgagcacttcaagctatatggagtttctaattcaaaggtttggcatccaa
cttaaatatcctgaacaacctcttcttcaagcaaaaccactattttctttgcacaacttg
ctacacaaccgaaggaaagaagattctgcagtgacacaagagctggacgagtacctcatt
gatttccctcctgaactttgtgagttgaagataataggcttttccaaggatattgggagt
tcaatttctctattaccatcaatcatgcatcgcctggaaaacttgcttgtagccattgaa
ttgaagagcttattatctgcttctttctctgagggagctgaagtgactgcatatagaata
ttagaagcactcactacagagaggtgccaggagcgtctttctcttgaaagacttgaaata
ttgggtgatgcttttctcaaatttgcagttggtcgacacctgtttcttttgcatgataca
cttgatgaaggggagcttactagaaaacgttctaatgctgtaaataattccaatttgttg
aagctagcaagcagaagaaacttgcaggtatatatacgtgatcaaccatttgatcctcga
cagttctttgctctgggtcatccttgccctgttatttgtactaaggagtcagaaggaagt
attcattcttctaatagaagtaatgcgaaaggtcaagaaaatactattgaagtcaggtgc
agtaggggtcaccattggttgtataaaaaaacaattgcagacgtcgttgaggctcttgtt
ggagcatttatagttgatagtggctttagagctgcaactgcatttcttaaatggctaggc
atcagagtgaacattgaagcttcagatgttactaaagtttgcctagcaagccgcactttc
atgccacttgctccttcaatagatgtttcttcccttgaagattctttggaccatcaattt
gtcaatagaggtctggtattacaggcatttgtgcatccttcctacaacaagcatggagga
ggctgctatcagagactcgagtttcttggagatgctgtcttggattacttgatcacatca
tatctattttcagtttatcccaagttgaagcctggtcttttgacagatctgagatcagca
ctggtaaacaacagagcattcgccatcgttgcagttgatcgatctttcaatgagtttctt
atatgtgattctggcaatctttcggaggctatagaaacttatgtgaattttgttaaaaga
cctgccgtagaaaaggattctcttgaaggaccaaaatgtccaaaggttcttggtgacttg
gtggagtcttgtataggtgccatttttctagacacaggattcgatctgaactgtatctgg
aagttaatgctatccttcttagatccaatattgaattcttccaatgtgctattgaatcct
tttcgagaactacatgagttttgtgaatctcataagtggaagttgcaatttccaacacta
aaaagggacatgaattttttagtcgaagcaaaagtaactggtaaagatatatgtcttgat
gcttctgcaaacaactcgaacaaaaaggaggccattagaattgcttcagagcaaataatt
gtgaagttaaaggatcaaggctacattcgcaagtctaactatttggaagaagttttaagg
tctggccagaagacagatgccaaattgattggatatgatgaaactcctatagatattact
gctcatgatcccattggtcttcaaaacttgaaaatccaggatcctagttgcagtgacttc
aatcccaaaattcgttccatgagtaaacttactaatacctgctcaccctgctttatagct
gcaaatatacagcccccatctccatcagtaatggttggcgggcagcccagcgcaacagtt
gcatatcctacatctgacatggacaagcctacctcagatggatcgcattatggatcagca
aaatcacgtttgcatgatatatgtgctgctaactgttggaaacctcctttgttcgaatgc
tgctatgaagaaggaccaagccacttgaagtctttctcttacaaggtgattgtggaaata
gaagcagcacctgatatgattttggagtgttttggggcacctagagagaaaaagaaagct
gcggccgagcatgcagcagaaggggcactgtggtacttgcaacatgtgggctacttaaca
gtgaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (10)   
   Pfam (10)   
All databases (57)   

Download RDF
DBGET integrated database retrieval system