KEGG   Ricinus communis (castor bean): 8277850
Entry
8277850           CDS       T01087                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X2
  KO
K15172  transcription elongation factor SPT5
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    8277850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rcu03021]
    8277850
   03019 Messenger RNA biogenesis [BR:rcu03019]
    8277850
Transcription machinery [BR:rcu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     8277850
  RNA polymerase I system
     8277850
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     8277850
SSDB
Motif
Pfam: Spt5-NGN KOW Spt5_N DUF4438 ProQ_C
Other DBs
NCBI-GeneID: 8277850
NCBI-ProteinID: XP_015579054
Position
2:8020062..8029647
AA seq 1043 aa
MARGRADDDDEGYEDEEYEEVMEDEEDEEIEEEEVRGGSNRKRRRSDFIDDVAEEDDEEE
EEEYDEDDDDYGGGGAGKRQKAKASSGKQFFDLEAEVDSDEEEEEDDDAEDDFIVDNGAD
LPDEDDGRRVHRRPLLPREDDQEDMEALERRIQARYARSSHTEYDEETTEVEQQALLPSV
RDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYIEADKEAHVRE
ACKGLRNIYAQKIMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNV
RQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNVDEARELHIRVERRRDPMSG
DYFENIGGMLFKDGFLYKTVSMKSISVQNIKPTFDELEKFRKPGENDGDIVGLSTLFANR
KKGHFVKGDAVIIVKGDLKNLKGWVEKVDEENVHIKPEMKDLPRTIAVNEKELCKYFEPG
NHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGDYE
LHDLVLLDNMSFGVIIRVESEAFQVLKGVPERPEVALVRLREIKCKIEKKFNVQDRYKNT
IAVKDVVRIIDGPCKGKQGPVEHIYKGVLFIYDRHHLEHAGFICAKSHSCIVVGGTRANG
DRNGDSYSRFSSFKTPPRVPQSPRRFPRGGPPFESGGRNRGGRGGHDALVGTTVKIRLGP
FKGYRGRVVEIKGPSVRVELESQMKVILVDRNNISDNVVISTPHRDSSRYGMGSETPMHP
SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPASWGTSPHY
QPGSPPSRAYEAPTPGSGWANTPGGSYSDAGTPRDSSSAYANAPSPYLPSTPGGQPMTPS
SAAYLPGTPGGQPMTPGTGGLDVMSPVIGGDNEGPWYMPDILVNVRKAADDSAIGVIRDV
LADGSCRVVLGANGNGETITALPNEIEIVVPRKSDKIKIMGGAHRGATGKLIGVDGTDGI
VKVDDTLDVKILDMVILAKLAQP
NT seq 3132 nt   +upstreamnt  +downstreamnt
atggctcgtggcagagccgacgacgacgacgagggatatgaagatgaagaatacgaagag
gtgatggaggacgaagaagatgaagagattgaagaagaagaagtaagaggaggatcgaat
aggaagagaaggagatcagattttatagatgatgttgccgaggaagatgatgaggaagaa
gaggaggaatacgatgaagatgacgatgattatggtggtggtggtgctggaaagagacag
aaagcaaaggcaagctcggggaagcaattctttgatttggaagctgaggttgatagcgat
gaagaagaagaagaagatgatgatgctgaggatgattttattgtcgataatggagctgat
ctacctgatgaagatgatggtagaagggttcatcgtaggccattgctccctcgggaggac
gatcaagaagatatggaagctctagagagaagaattcaagcaaggtatgcaaggtcaagt
cacacagaatatgatgaagagactacagaagtggagcaacaagctcttctgccatctgtt
cgggatcccaaattgtggatggtgaaatgtgcgattggccgtgaacgagaaacggctgta
tgccttatgcaaaaatatattgataaaggatctgagttgcaaatccgttctgctattgct
cttgatcatcttaagaattatatttatattgaagcagataaggaggcccatgttagggag
gcttgtaaaggtctgcgcaatatatacgcccagaaaataatgcttgtcccaatcaaagaa
atgactgatgttctttcagttgaaagcaaggcaatagatctttcaagggatacctgggtc
agaatgaagattggaacatacaaaggggaccttgctaaagtagtagatgtagataatgtc
cgacagagagttacagtgaagttaattccaaggatcgatctgcaggctcttgcaaataaa
ctggagggcagagaagttgcaaaaaagaaggcttttgtcccccctccacggtttatgaac
gtagatgaagcaagggaactacatattcgtgtagagcgaagaagggatcctatgagcggt
gattattttgaaaatattggtggaatgttgtttaaagatggattcttgtataaaactgtg
tcaatgaaatcaattagtgttcagaacatcaaaccaacttttgatgaacttgagaagttc
cgaaagcctggtgagaatgatggtgatatcgtcggtttgtcaaccttatttgcaaacaga
aagaagggccattttgtgaaaggtgatgcagttattattgtcaaaggagatttgaaaaac
cttaagggatgggttgagaaagttgatgaagagaatgttcatatcaaacctgaaatgaag
gaccttcctagaactattgcagtgaatgaaaaggagctttgcaagtacttcgaaccgggt
aatcacgtgaaggttgtctctggtacccaggagggtgcaactggtatggttgttaaggtc
gagcaacatgtgctcatcattctgtctgatacaaccaaggaacacattcgtgtttttgcc
gatgatgttgtggaaagctctgaggtaaccaccggcgttacaaaaattggagattatgag
cttcatgatctggtgctattggataatatgagctttggtgtaataatacgtgtggaaagc
gaagcctttcaggttcttaagggagttccagaaagacctgaggttgctcttgttagattg
agagagatcaaatgcaagattgagaagaaatttaatgtgcaagatcggtacaagaatact
atagcagtgaaggatgttgttagaataattgatggcccttgcaaagggaaacaaggtcct
gtagaacacatatacaaaggagtattgttcatttatgatcggcatcatcttgaacatgct
ggatttatttgtgctaaatcgcattcttgtattgttgtgggaggaacacgagccaatggc
gatagaaatggtgattcctactcgagatttagcagttttaaaactccccctcgggtaccc
caatcaccaaggagatttccaagaggtggtcctccatttgagtctggaggaaggaatcgt
ggtggaagaggagggcacgatgctctggtcggtacaacggtgaagatacgtctgggtcct
ttcaaaggttatcgtggacgggttgtagagatcaaaggcccatctgttcgagttgagttg
gagtctcagatgaaggttattttagttgatcgcaataatatttctgacaatgtggttata
tctactccacaccgggattcatctcggtatggtatgggaagtgaaactcccatgcatcct
tctcggactccactgcacccatatatgacaccaatgagagatgctggagcgacacccatt
catgatgggatgaggacccctatgcgtgaccgagcatggaatccttatgcgccgatgagt
cctcccagggataactgggaagatggaaatccagcgtcttggggaacaagtccacattat
cagccaggaagccctccttctcgggcatatgaagctccaactcctggatcaggctgggct
aacactcctggtggtagttatagtgatgcaggaacaccaagggatagcagttctgcttat
gccaatgctccaagtccgtacttgccatcgactcctggtgggcagcctatgactccaagc
tctgcagcctaccttcctggaactcctggagggcagccaatgacgcctgggactggtggt
cttgatgtcatgtcccctgtaataggaggggacaatgaaggaccatggtacatgccagat
atattggttaatgtacgaaaggctgcagatgactctgctattggtgttatcagggatgtg
cttgcggatgggtcctgtagagtagtccttggggcaaatggcaatggtgaaacaatcaca
gctcttcccaatgaaattgaaatagtggtaccgagaaaatcagataagatcaagatcatg
ggtggagcgcatcgcggtgccacgggtaagttaattggtgttgatggcacagatggaatt
gtaaaagtagatgacacacttgatgttaagatattagacatggttatactggcaaaactg
gctcaaccatga

DBGET integrated database retrieval system