KEGG   Ricinus communis (castor bean): 8282320
Entry
8282320           CDS       T01087                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03013  Nucleocytoplasmic transport
rcu03015  mRNA surveillance pathway
rcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8282320
  09122 Translation
   03013 Nucleocytoplasmic transport
    8282320
   03015 mRNA surveillance pathway
    8282320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcu03019]
    8282320
   03041 Spliceosome [BR:rcu03041]
    8282320
Enzymes [BR:rcu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     8282320
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     8282320
Spliceosome [BR:rcu03041]
 Complex C
  Other components
   EJC/TREX
    8282320
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    8282320
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 DNA_repr_REX1B YihI
Other DBs
NCBI-GeneID: 8282320
NCBI-ProteinID: XP_002517619
UniProt: B9RV50
Position
8:complement(10291293..10296436)
AA seq 427 aa
MEEVKDTEAYEEELLDYEEEEEKAPDSVSAKAADTAKKGYVGIHSSGFRDFLLKPELLRA
IIDSGFEHPSEVQHECIPQAILGMHVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDLKVSVFYGGVNIKIHKDLLKNECPHVVVGTPGRILAL
ARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPYDKQVMMFSATLSKEIRPVC
KKFMQAPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLMECNFPSICIHSGMSQEERLTKYKNFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQID
TSTYMPS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggaagaagttaaagataccgaggcttacgaggaggagctactcgactacgaggaagaa
gaggaaaaagcccctgactctgtctctgctaaagcggctgatactgctaaaaagggatat
gttgggatacacagttcaggtttcagagacttcctactgaagccagagcttctacgagcc
attatagattctggatttgagcatccttcagaagtgcaacacgagtgcatccctcaagca
attctaggaatgcatgtcatatgccaagcaaaatctgggatgggaaagactgccgtattt
gttttatccactctgcagcagattgatcctgttgcaggtcaagttgctgcgctcgttctt
tgccatacaagagaattagcatatcagatatgccatgaatttgagaggttcagtacatat
ttgccggatttaaaggtttctgtcttctatggcggtgtcaatatcaagattcacaaggat
ttacttaaaaatgaatgccctcatgttgttgttggaactcctggaagaatattggctctg
gccagggataaagatcttggattgaagaatgtgagacattttatcctggatgagtgtgac
aagatgcttgaatcacttgatatgaggagagatgtgcaggagatcttcaagatgactcct
tatgataagcaagttatgatgttttcagctacacttagcaaggaaattcgtcctgtttgc
aagaaatttatgcaagctcctatggaaatttatgtagatgatgaggccaagttgactctt
catggtcttgtacagcactacattaaattgaccgagctggagaaaaatcgaaagttgaat
gacctgcttgatgccttggatttcaaccaagttgtcatctttgtcaaaagtgtgagcaga
gcagctgagctgaacaagttattgatggagtgtaacttcccctctatatgtattcactct
ggaatgtctcaggaagaacggttgacaaagtataagaattttaaggaggggcacaaaaga
attcttgtagcgactgatttggttggaagaggaattgatattgaacgtgttaacattgtt
atcaactatgacatgcctgattctgctgatacctatttgcacagggtgggaagagctggt
aggtttgggaccaagggccttgcaattacattcgtctcctctgcatcagactcagatgtt
ctgaatcaagttcaagccaggtttgaggtggatattaaggagctccctgagcagattgat
acttccacatatatgccatcgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (39)   

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