KEGG   Roseobacter denitrificans: RD1_0546
Entry
RD1_0546          CDS       T00376                                 
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid--CoA ligase
  KO
K01897  long-chain acyl-CoA synthetase [EC:6.2.1.3]
Organism
rde  Roseobacter denitrificans
Pathway
rde00061  Fatty acid biosynthesis
rde00071  Fatty acid degradation
rde01100  Metabolic pathways
rde01212  Fatty acid metabolism
rde02024  Quorum sensing
Module
rde_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:rde00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    RD1_0546 (fadD)
   00071 Fatty acid degradation
    RD1_0546 (fadD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RD1_0546 (fadD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:rde01004]
    RD1_0546 (fadD)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rde04147]
    RD1_0546 (fadD)
Enzymes [BR:rde01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     RD1_0546 (fadD)
Lipid biosynthesis proteins [BR:rde01004]
 Acyl-CoA synthetase
  Long/very long chain acyl-CoA synthetase
   RD1_0546 (fadD)
Exosome [BR:rde04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   RD1_0546 (fadD)
  Exosomal proteins of breast cancer cells
   RD1_0546 (fadD)
SSDB
Motif
Pfam: AMP-binding AMP-binding_C CBFD_NFYB_HMF DUF412
Other DBs
NCBI-ProteinID: ABG30251
RoseoBase: RD1_0546
UniProt: Q16CP2
Position
529666..531387
AA seq 573 aa
MTAQERPWTAFYGVGVRPDLPEASYRTIGDLVHSVANTYGKAPAFTACMPNGMNGTLTFE
QVDQMSDAFAVYLREVAGLQQGDRVALQMPNCLSFPIAAFGILKAGCVLVNVNPLYTADE
MAKQFVDAEPHALIIVDMFADKIPQATRGHPIPNIIVTRVAEFLPTLPKWIIGLVQKHWD
KSVKAIEVPHIRLPDAIAAGRVHMQSEKIEVYAYRRNVQPDDIACLQYTGGTTGVAKGAM
LTHANLIMNMEQVMELISGVEKGKEVALTALPMYHIFAFTVNLLGFYWLGARNILIPNPR
PLVSLKRAMENYKITWMSGVNTLFNGLTNEVWFTDSPPKHLKFASAGGMALQTAVEERWQ
EITGKPVVQGYGLTETSPALTFEPLGKKRSGTIGVPVPSTLVACLDEYGHEVPVGQSGEI
AAKGPQIMAGYWNKPEETAAVMKDGWFLTGDIGVMDADGYFTIVDRKKDMVVVSGFNVYP
NEIEECLATHPAIVEAAVIGVPDDATGEAVKAFVVKRDPSLSEAEVRAHCKAHLTAYKIP
KRVEFRDELPKSNVGKILRKDLRASEIAHQAQE
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgactgcgcaggagcggccatggacggcattttatggtgtgggcgtgcgtccggacctg
cccgaggcatcttaccgaaccattggcgatctggtgcattccgtcgccaatacctatggc
aaggccccggccttcaccgcctgcatgcccaatggcatgaatggaacgctgacgtttgag
caggtggaccagatgtccgatgcctttgcggtgtacctgcgcgaggttgccgggttgcag
cagggcgatcgcgtcgcgttgcagatgcccaattgcctcagctttccaatcgctgccttt
gggattctcaaagctgggtgcgttctggtcaatgtgaacccgctgtacacagcggacgag
atggcaaaacaattcgtggacgcagaaccccacgccctgatcatcgtggacatgttcgcc
gacaaaatcccgcaagcgacgcgcggtcatccgatcccgaatatcattgtcacgcgtgtc
gcggagtttttgccgaccctgccaaagtggatcatcgggctggtgcaaaagcactgggac
aaatcggtgaaagccattgaggtgccgcatatccgcctgcctgatgcgattgcggcgggt
cgggtgcatatgcagtccgaaaagatcgaggtttatgcctatcggcgcaatgtgcagcct
gatgacatcgcctgcctgcaatacaccggtggcacaaccggcgtggcaaagggcgcgatg
ctgacccatgcaaatctgatcatgaacatggaacaggtgatggagctgatctccggcgtg
gagaagggcaaagaggtcgccctgacagccctgccgatgtatcatatctttgccttcacg
gtgaatttgctcgggttctactggctgggcgcgcgcaacatcctgatcccgaacccgcgt
cctctggtcagcctgaaacgcgcgatggagaattacaagatcacgtggatgagcggtgtg
aacaccctgttcaacggcttgacgaatgaggtctggttcacggacagcccgcccaaacat
ctgaaattcgcctctgctggcggtatggcgctgcaaacggcggttgaagaacgctggcag
gagattaccggaaaaccagtggttcagggctatggcctgaccgaaacatcacccgcgctg
accttcgaacctttgggtaaaaagcgcagtggcaccatcggcgtgcctgtgccgtccacc
ttggtggcctgtctggatgagtatggccacgaggtccccgtcggccaatccggagagatt
gcagcaaaggggccgcagatcatggccggctattggaacaagcccgaagaaaccgcggcg
gtgatgaaagacggctggttcctgaccggcgacatcggcgtcatggatgcggatggctat
ttcaccatcgtagaccgcaaaaaggacatggtggtggtgtccggtttcaacgtctacccc
aatgagatcgaggaatgcctcgcaacccaccctgcgattgtcgaggcggcggtgatcggt
gtgccagatgacgcaaccggggaggcggtcaaagcctttgtcgtcaaacgcgacccaagc
ctgtcggaggcggaggtgcgtgcccattgcaaggcgcatctgaccgcctataaaatcccc
aaacgtgttgagttccgcgatgagctgccgaaatccaacgtcgggaaaatcctcagaaaa
gacctgcgcgcaagcgaaatcgcgcatcaggcgcaggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (43)   

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