KEGG   Roseobacter denitrificans: RD1_0988
Entry
RD1_0988          CDS       T00376                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
rde  Roseobacter denitrificans
Pathway
rde03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rde00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RD1_0988 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rde03019]
    RD1_0988 (deaD)
   03009 Ribosome biogenesis [BR:rde03009]
    RD1_0988 (deaD)
Messenger RNA biogenesis [BR:rde03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     RD1_0988 (deaD)
Ribosome biogenesis [BR:rde03009]
 Prokaryotic type
  rRNA helicases
   RD1_0988 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII
Other DBs
NCBI-ProteinID: ABG30655
RoseoBase: RD1_0988
UniProt: Q16BI8
Position
complement(952996..955113)
AA seq 705 aa
MALPIGYFVLKTLSDALAEQGYDTLTPVQEAVTAPELAKADLLVSAQTGSGKTVGFGLAI
APTLLGEQEHFGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTER
RALDRGAHVVVATPGRLCDHIKRGNIELSGLRAVVLDEADEMLDLGFREELEFILDEAPT
DRRTLLFSATVPKAIAKLAESYQRDAQRIETVSETRQHADIEYRALNTHPRDVENAIINV
LRFYEAKNAIVFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVC
VATDVAARGIDLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRTKANR
LLGWAKLKAEWGTPPSAAEVNAQDTARLLSDPLWNATVSEEAEELVAQLAQDFSATQLAQ
AVVSFYQAQRSAPEELTDPTTPDDRPRKTFGPSVWFSVSVGRDAGAEPRTLLPMICNKGD
MTKDDIGAIRIRQDQSFVEVLASRADGLVAALGSDMTLEAGVVLTRLAQAPDLGQDRPGT
SKPGAKPHRKKRPEDRDARPERAARPARAASPAQDARKDKPHKPAAAAKGKKPPKSHKTE
RSPMKPGAAPKPKSTRGENPDRKPGKAKAVWTKDARDTARAEKVTRDKAHREDSGAGRPT
AKGGPRKDPSASKKRAADTSKRFVPPHKRGKSTGKGPNARPQRKG
NT seq 2118 nt   +upstreamnt  +downstreamnt
gtggctctaccgataggatatttcgtgctcaagaccctttcagatgcgctggccgaacaa
ggctatgacaccctcaccccggttcaggaagccgtcaccgcacccgaactggcaaaggcc
gatttgctggtctcggcacagaccgggtccggcaaaacggtcggcttcgggctggcgatt
gcgcccacactgctgggggagcaggaacattttggccccgcaggcaccccgctggcgctg
atcatcgccccgacacgcgagttggcacagcaggtcgcgcgcgaactgtcctggctctat
gccaaggcgggggcggtcgtgatctcctgtgtcggcggcatggacacgcgcaccgaacgg
cgtgcccttgatcgcggggctcatgtggttgtggccacgccggggcggctgtgcgatcac
atcaagcgtggcaatatcgaactgtccggcctgcgcgccgtggttctggacgaagcggat
gaaatgctcgacctcgggtttcgcgaagagcttgaattcatcctcgatgaagcgcccacg
gaccgccgcaccctgctgttttccgcaaccgtgccaaaggccatcgccaagctggccgaa
agctatcagcgcgatgcgcagcgcatcgaaaccgtctccgaaacccgccagcacgcagat
atcgaataccgcgccctcaacacacatccgcgcgacgtggaaaacgcgatcatcaatgtc
ctgcgcttttacgaggccaagaacgcgatcgtcttttgcaacacgcgcgccgctgttgcg
cggcttacgacgcgctttaccaatcgcggattttcggtcgtcgcactctcgggtgagttg
acccaatccgaacgcagcaacgccttgcaagcgctgcgcgatgggcgcgcgcgcgtctgc
gttgccaccgatgtggccgcgcgcggcattgatctgcccaacctcgaactggtgatccac
gccgatctgccgagcaattccgacacgctgttgcaccgctccgggcgcacggggcgggcc
gggcgcaaaggggtctcggcgctgatcgtgcccccgaaactgcgcacaaaggcgaaccgt
ctgctgggctgggcgaaactcaaagcggaatggggcacaccgccttctgcggctgaggtc
aacgcgcaggataccgcgcgcttgctgtcggatccgctgtggaatgccaccgtcagcgag
gaggccgaagagcttgtcgcgcaactcgcgcaggatttctccgccacgcaattggcgcag
gcggtggtgagcttttatcaggcgcaacgctccgcacccgaggaattgaccgatcccaca
accccggatgaccggcctcgcaagacctttggcccctcggtctggttctcggtttcagtc
gggcgcgacgcgggtgccgaaccccgcacactcctgccgatgatctgcaacaagggcgat
atgacaaaggatgacatcggcgccatccgcatccggcaggaccagagttttgtcgaagtg
ctggcgtcacgggcggatgggctggttgccgcgctcggcagcgacatgacgctcgaagcc
ggggttgtgctgacccgtctggcccaagcacccgatctggggcaggaccgtcccggcacc
agcaagcccggtgccaaaccacaccgcaaaaaacggcccgaggaccgcgatgcccgtcct
gaacgcgccgcaagacctgcccgcgctgcaagccccgcgcaggacgcacgcaaggacaaa
ccgcacaaaccggcggccgccgccaaaggcaaaaagccacccaaatcacacaagaccgaa
cgctcccccatgaaaccgggggccgcgcccaaacccaaaagcaccagaggcgaaaacccg
gatcgcaaacccggcaaggccaaagcggtctggacaaaggacgcccgcgacaccgccaga
gcggaaaaagtcacccgcgacaaggctcaccgcgaagacagcggtgccgggcgccccaca
gcaaaaggtggccccagaaaagacccaagcgcatcgaaaaagcgcgccgcagatacatca
aaacgcttcgtgcccccgcataaacgcggcaaatcaaccggcaagggcccgaatgcgcgc
cctcagcgcaaaggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

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