KEGG   Roseobacter denitrificans: RD1_1254
Entry
RD1_1254          CDS       T00376                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
rde  Roseobacter denitrificans
Pathway
rde03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RD1_1254 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rde03400]
    RD1_1254 (uvrB)
DNA repair and recombination proteins [BR:rde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RD1_1254 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      RD1_1254 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 UB2H AAA_22 Kinesin DUF87 eIF3_p135 AAA HIND
Other DBs
NCBI-ProteinID: ABG30901
RoseoBase: RD1_1254
UniProt: Q16AU2
Position
complement(1214822..1217020)
AA seq 732 aa
MPYAHSDTTEAVLANAAPDVRAREKLEGGKRFKLATDFEPAGDQPTAIKELAAGVLSGER
DQVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSFY
DYYQPEAYVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVET
YGAMTQDLKTGRMYDQRQVMADLVAQQYRRNDQSFQRGSFRVRGDSLEIFPAHLEDRAWK
LSFFGEELESITEFDPLTGEKTNTFEQIRVYANSHYVTPKPTMQQAIISIKKELRTRLDQ
LVGDGKLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNA
IVFADESHVSVPQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVS
ATPAAWEMDQTGGVFTEQIIRPTGLIDPEIEIRPVEMQVDDLLDEVRKVAADGFRTLVTT
LTKRMAEDLTEYMHEQGIRVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIP
ECGLVAILDADKEGFLRSETSLIQTTGRAARNAEGRVIMYADRITGSMERAIEETNRRRA
KQIAYNEKHGITPTTVKKNVEDILAGLYKGDTDQSRVTAKIDKQMAGGNLQAVLDGLRTD
MRKAAENLEFEEAARLRDEVKRLEAVDLAIADDPMARQYAVEKAVEDSAKASGRSTLGRG
GMRGGVKRKRGR
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgccctacgcacattccgacaccaccgaggccgttctggccaacgctgcacccgacgtg
cgcgcccgcgagaaactggagggtggcaagcgcttcaagctggcgaccgacttcgaaccc
gcaggtgaccagcccaccgccatcaaggaactcgctgccggtgtgctgagcggggaacgc
gaccaagtgcttctgggggcgaccggcacgggcaagacctttaccatggccaaggtgatc
gaggaaacgcaacgccccgcgatcattctggcccccaacaaaaccctcgctgcccagctc
tatggcgagttcaaagggttctttcccgataacgcggtggagtatttcgtcagcttctac
gactactatcagcccgaagcctatgtggcgcgctcggatacctacatcgagaaagagagc
cagatcaacgaacagatcgaccgcatgcgccactccgcgacacgcgccctgcttgaacgc
gacgacgtgatcatcgtggcctcggtgtcctgcatctatggcatcggatcggtggaaacc
tacggcgccatgacgcaggacctcaagaccgggcggatgtatgaccagcgacaggtgatg
gcggatctggtggcgcagcaataccgccgcaacgatcagtcctttcagcgtgggtctttc
cgggtgcgcggcgacagcctcgaaatctttcccgcccaccttgaagaccgcgcctggaag
ttgtcttttttcggcgaagaactggaatctatcaccgaattcgacccgctgaccggtgag
aaaaccaacacattcgagcaaatccgcgtttatgccaacagccactacgtgacgccgaaa
cccacgatgcagcaggcaatcatcagcatcaagaaagagctgcgcacccggctcgatcaa
ctcgtgggcgatggcaaactgctcgaagcgcagcggctggagcagcgcacgaacttcgac
cttgagatgctggaagccacgggcgtgtgcaacgggatcgagaactattcgcgctatctg
accggtcgcgcaccgggggagccgccccccacgctctttgaattcatccccgacaacgcc
atcgtctttgccgatgagagccacgtctccgtgccgcagatcggcggcatgtacaaaggc
gactaccggcgcaaattcacgctggccgaacacgggttccgcctgccttcctgcatggac
aaccgccccctcaagttcgaggaatgggacgccatgcgcccgcaatcggtctttgtttcc
gccacgcccgccgcctgggaaatggaccagacaggcggtgtgtttaccgaacagatcatc
cgccccaccggcctgatcgacccggaaatcgaaatccgcccggtcgagatgcaggtggac
gatctgctggatgaagtacgcaaggtggccgccgatggcttccgcacactggtcacgacg
ctcaccaaacgcatggccgaggacctcaccgaatacatgcacgaacagggcatccgcgtg
cgctacatgcacagcgatatcgacacgctggaacgcattgaaatcctgcgcgatctgcgg
ctgggtgcctttgacgtgctgatcgggatcaacctgctgcgcgaaggtttggacatcccc
gaatgtgggctggtggcgattctggatgcggataaggaaggcttcctgcgctctgaaacc
tcactgatccagaccacggggcgcgccgcgcgcaatgccgaagggcgcgtgatcatgtac
gccgaccgcattaccggctcgatggaacgcgcgatcgaggaaaccaaccgccgccgcgcc
aaacagatcgcctataacgaaaaacacggcatcaccccgacaacggtgaaaaagaacgtc
gaggatatcctcgccgggctttacaaaggcgacacggaccaatcccgcgtcaccgccaag
atcgacaagcagatggcgggcggcaacctgcaggcggtgctggacgggctgcgcacggat
atgcgcaaggccgccgagaacctcgaattcgaagaggccgcaaggttgcgcgacgaagtc
aaacgcctcgaagccgtcgacctcgccatcgccgacgaccccatggcgcgtcagtatgca
gtggaaaaagccgtggaagacagcgccaaagcctcaggccgcagcacactgggccgcggc
ggcatgcgcggcggggtgaagcggaagcgggggcgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (78)   

Download RDF
DBGET integrated database retrieval system