KEGG   Roseobacter denitrificans: RD1_2956
Entry
RD1_2956          CDS       T00376                                 
Symbol
rimK
Name
(GenBank) ribosomal protein S6 modification protein (C terminal domain)
  KO
K05844  ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
Organism
rde  Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:rde00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rde03009]
    RD1_2956 (rimK)
Ribosome biogenesis [BR:rde03009]
 Prokaryotic type
  ribosomal protein modification factors
   RD1_2956 (rimK)
SSDB
Motif
Pfam: RimK Rimk_N Zn_protease GSH-S_ATP ATP-grasp_3 ATPgrasp_ST ATPgrasp_YheCD
Other DBs
NCBI-ProteinID: ABG32477
RoseoBase: RD1_2956
UniProt: Q164W6
Position
2835732..2837111
AA seq 459 aa
MEKLTFGWEEWVSLPDLGLPAIKAKVDTGARTSALHAHDIEVFGPAKTPKVRFNVHPVSG
RDDISITCSAPLVDRREVTSSNGEAEQRFVISSELHVGGQNWPIEITLTNRASMNSRMLL
GRQALSDHISISPTERHLQPELSYEDYHSASLKKGAPKRALRIAVLSREDNYSTRRLVEV
GEARGHVVEVIDTTRCYMAINTMAPEVHYDGKRLPRYDAVIPRIGASITPYGTAVIRQFE
AIGTYCVNGSAGITASRDKLHAHQVLATKRIGMPSTAFAASPKDTSNLMALVGTAPLIVK
LLESTQGKGVVLAETKKAAESVIDAFRGLKANFLVQDFVKEAAGEDIRCLVIAGKVVAAM
KRTGAEGDFRSNLHRGGSAKVVRITKQERDTAVRAARAFGLGKAGVDLLRATAGPKVLEV
NSSPGFEGIEKATGKDIVGKLYDEIETRVRPQPARKRRS
NT seq 1380 nt   +upstreamnt  +downstreamnt
atggaaaagctcacgttcggatgggaggaatgggtatctctgcccgacctcggcttgccc
gcaatcaaggccaaggtggacacaggcgcgcgcacctcggcgctgcatgcccatgacatc
gaagtcttcggcccagccaaaacgccaaaagtgcgcttcaacgtgcatccggtgtcgggt
cgtgatgatatttccatcacctgctcggcgccacttgtggaccgcagggaggttacctcc
tcaaatggcgaggccgaacagcggttcgtgatctcttcggaattgcatgttggcggacag
aactggccaatcgagattacgctcacaaaccgcgcctcgatgaattcgcgcatgctgctg
gggcgacaggcgctcagcgatcacatctcgatctcgccgacggaacgtcatctgcaaccc
gaactcagttatgaggactatcacagcgcatcgctgaaaaagggcgcacccaaacgcgcg
ctgcgcatcgcggttctcagccgggaggataactactccacgcggcgccttgtcgaggtg
ggagaagcccgcggtcacgtggttgaagtcatcgacacaacccgttgttatatggcgatt
aataccatggcgccagaagtgcattatgacgggaaacgcctgccgcgctatgatgcggtc
attccccgcatcggggcttcgatcacgccctatggcaccgcggtgatccgccagttcgaa
gcaattgggacctattgcgtgaacggttccgccgggatcaccgccagccgggacaaactg
cacgcccatcaggtgctggccacaaaacggatcggcatgccatcgacggcctttgccgcc
tcacccaaggacacatcgaacctgatggcattggtcggcaccgcaccgctgattgtcaaa
ttgctcgaaagcacgcaaggcaaaggcgtggttctggccgagacaaaaaaagcagccgag
tccgtcatagatgcattccggggtctcaaggccaattttctggtgcaggatttcgtcaag
gaagcagccggagaggacatccgctgccttgtgatcgccggcaaggtcgttgcggccatg
aagcgcaccggggcggagggggattttcgttccaacctgcatcggggcggatcggcgaaa
gtcgtgcgcatcaccaagcaggagcgcgacaccgccgtgcgcgccgcccgtgcctttgga
ctcggcaaggccggtgtggatttgctgcgcgccaccgcaggccccaaggtgcttgaggtc
aactcctcccccggttttgagggcatcgaaaaagcgactggcaaagatattgtgggcaag
ctctatgatgagatcgaaacccgcgtgcgcccgcagcctgcgcgcaagcggagatcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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