KEGG   Roseobacter denitrificans: RD1_3138
Entry
RD1_3138          CDS       T00376                                 
Symbol
rhlE2
Name
(GenBank) putative ATP-dependent RNA helicase, putative
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
rde  Roseobacter denitrificans
Pathway
rde03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rde00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RD1_3138 (rhlE2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rde03019]
    RD1_3138 (rhlE2)
Enzymes [BR:rde01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     RD1_3138 (rhlE2)
Messenger RNA biogenesis [BR:rde03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     RD1_3138 (rhlE2)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 AAA_19
Other DBs
NCBI-ProteinID: ABG32646
RoseoBase: RD1_3138
UniProt: Q164E7
Position
complement(3014297..3015598)
AA seq 433 aa
MSDFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL
VAQMLELDGRPAPKSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQIK
RLERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPKE
RQTMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKPGLLIEML
DKHRDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVLV
ATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKAI
QKTMGISIPVGSGRPWEAADIPPGDKTKGRGRGRGGRPPQAGKPAGGRPGGPRKRAGARN
RRGKPAASGGANR
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgagcgatttcgaaatgatgaacctgccaccggaactggtggcacgactgggccgcatg
ggtctgaaggatccgactccgatccagaaacaggcgataccgcatgcgatgaacgggcgc
gatgtgatgggccttgcgcaaacgggcaccggtaaaacggccgcctttggcgtgccgctg
gtggcgcagatgctggaactcgacgggcggcccgcgcccaaatccgtgcgcgggctggtt
ctggcgccgacgcgtgaattggccacgcagatcagcgtcaatctgcgctcctttgccgaa
aacaccaaggtgaaggttgcgatggtggttggtggccagtcgataaacaaccaaatcaaa
cggttagagcgcggtgttgatctattggttgcaacgcccgggcggttgctggacctgatg
gaccgccgcgccgtgcggctggatgaggcggtttttctggtgctggatgaagcggaccag
atgctggacatggggttcatccatgatctgcgcaagatcgccagcgtgatccccaaagag
cgtcagacgatgctgttttccgccacgatgccgaaacagatgaacgaactggccaatagc
tatctgcgcagccccatccgggttgaggtctccccgccgggcaaggccgccgacaaggtc
acgcaggaagtccatttcatcgccaaatccgaaaaacccggcctgttgatcgagatgctg
gacaaacaccgcgacgaacgcgcactggttttcggccgtacgaaacacggctctgaaaag
ctgatgaaatcgctggtcaaggcgggctacgcggcaggctccattcacggcaacaaaagt
cagggccagcgcgaccgcgccatcgcagccttcaaatccggggagatcaaggttctggtg
gcgacggatgtggccgcgcggggtctcgacattccggacgtgaaacatgtctacaactat
gatctgccgaatgtgcctgacaattacgttcaccgcatcgggcgcacagcgcgggcgggc
aaggatggtgcggccatcgcgttttgtgcgcccgatgagatgggcgagttgaaggcgatc
cagaaaaccatggggatctcgatcccggtcggctccggcaggccttgggaggctgcggat
attccgcccggcgacaagacaaagggccggggtcgcggacgcggcggtcgcccgccgcag
gcaggtaaacccgcaggcggcagacccggggggccacgcaagcgcgccggcgcacgcaac
cgccgtggcaaacccgcggcttcgggtggcgcaaaccgctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (71)   
   KEGG ORTHOLOGY (1)   
   RefGene (67)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (82)   

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