KEGG   Roseobacter denitrificans: RD1_3333
Entry
RD1_3333          CDS       T00376                                 
Symbol
gatB
Name
(GenBank) glutamyl-tRNA(Gln) amidotransferase, B subunit
  KO
K02434  aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Organism
rde  Roseobacter denitrificans
Pathway
rde00970  Aminoacyl-tRNA biosynthesis
rde01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rde00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    RD1_3333 (gatB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:rde03029]
    RD1_3333 (gatB)
Enzymes [BR:rde01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.5  Carbon-nitrogen ligases with glutamine as amido-N-donor
    6.3.5.6  asparaginyl-tRNA synthase (glutamine-hydrolysing)
     RD1_3333 (gatB)
    6.3.5.7  glutaminyl-tRNA synthase (glutamine-hydrolysing)
     RD1_3333 (gatB)
Mitochondrial biogenesis [BR:rde03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    RD1_3333 (gatB)
SSDB
Motif
Pfam: GatB_N GatB_Yqey
Other DBs
NCBI-ProteinID: ABG32832
RoseoBase: RD1_3333
UniProt: Q163L1
Position
3197980..3199491
AA seq 503 aa
MLDLTYETPAPKVISGAKEDWELVIGMEVHAQVTSAAKLFSAASTQFGAEPNNNVSFVDA
AMPGMLPTINEYCVEQAVRTGLGLKAEINLHSAFDRKNYFYPDLPQGYQISQLYHPIVGE
GEVLVEMGNGTARLVRVERIHLEQDAGKSIHDMDPNMSFVDLNRTGVALMEIVSRPDIRG
PEEAAAYLGKLRQILRYLGTCNGDMQSGAMRADVNVSICRPGQYEKYQATQDFSHLGTRC
EIKNMNSMRFIQQAIEVEARRQIAIVEAGGTVDQETRLYDPDRNETRSMRSKEEAHDYRY
FPDPDLLPLEIEQAWVDDIAANLPELPDAKKARFRNDFGLSDYDASVLTADLDSAGYFEA
VAAGRDGKMAANWVINELFGRLKKEDHAITDSPVSPAQLGGIIDLIASDAISGKIAKDVF
EICYTTGRDPAEIVETEGMKQVTDTGAIEAAVDEIIAANPDQVAKARENPKLAGWFVGQV
MKATGGKANPKVVNQLIAKRLAE
NT seq 1512 nt   +upstreamnt  +downstreamnt
atgctcgatctgacttatgagacccccgcacccaaggtgatttccggtgcgaaggaagac
tgggaactggtcatcggcatggaggtgcacgcgcaggtcacctcggctgcgaagctgttt
tccgccgcctccacccaattcggggccgagccgaacaataatgtatccttcgttgatgcg
gccatgcccggtatgctgcccacgatcaacgaatactgtgttgaacaggcggtgcgcacc
gggctgggcctgaaggcagaaatcaacctgcacagcgcttttgaccgcaagaactatttt
tacccggatttgccacagggttatcagatcagccagctctaccacccgattgtcggtgaa
ggcgaagtgctcgtcgaaatgggcaacggcacggcccgtctggtgcgggtcgaacgcatt
caccttgaacaggacgcaggcaaatcgatccatgatatggacccgaacatgtcctttgtg
gacctgaaccgcaccggcgtcgccctgatggagatcgtctcgcgccccgacatccgcggc
cccgaagaagcggcggcctatctgggcaaactgcggcagatcctgcgctatctcggcacc
tgcaacggtgacatgcagtcgggcgccatgcgcgcggacgtcaacgtgtcgatctgccgg
cccggccagtacgaaaaatatcaggccactcaggacttcagccatctgggcacgcgctgc
gagatcaagaacatgaactccatgcggttcatccaacaggccatcgaggtcgaggcgcgc
cgccagatcgcgatcgtcgaggctggcggtacggttgatcaggaaacccgcctttatgat
cctgaccgcaacgagacacgctccatgcgctccaaggaagaggcgcatgactaccgctat
ttccccgaccccgacctgttgccgctcgaaatcgaacaggcatgggtggatgacatcgcc
gccaacctgcccgaactgcctgacgccaagaaggcgcggtttcgcaatgatttcggtctg
tcggattatgacgcttcggtgctgaccgccgatctggattcagcgggttatttcgaggcc
gtggcggcaggccgggatggcaagatggcggccaattgggtgatcaacgaactcttcggg
cggctcaagaaagaggaccacgccatcacggacagccccgtcagccctgcacaattgggc
ggcattatcgatctgatcgcctcggatgcgatctccggcaagatcgccaaggatgtcttt
gaaatctgctataccaccgggcgcgacccggcggagatcgtggaaaccgaaggcatgaaa
caggtcactgacacaggcgcaatcgaggctgccgtggatgaaatcatcgccgccaacccc
gaccaggtggccaaggcgcgcgaaaacccgaaacttgcgggctggttcgtcggtcaggta
atgaaagcgacaggcggcaaggccaaccccaaagtggtcaaccaactgattgcaaaaagg
cttgcagagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (10)   
   KEGG COMPOUND (10)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (38)   

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