KEGG   Roseobacter denitrificans: RD1_3664
Entry
RD1_3664          CDS       T00376                                 
Symbol
dmsA
Name
(GenBank) dimethyl sulfoxide reductase
  KO
K07812  trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
Organism
rde  Roseobacter denitrificans
Pathway
rde00680  Methane metabolism
rde01100  Metabolic pathways
rde01120  Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:rde00001]
 09100 Metabolism
  09102 Energy metabolism
   00680 Methane metabolism
    RD1_3664 (dmsA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rde02000]
    RD1_3664 (dmsA)
Enzymes [BR:rde01000]
 1. Oxidoreductases
  1.7  Acting on other nitrogenous compounds as donors
   1.7.2  With a cytochrome as acceptor
    1.7.2.3  trimethylamine-N-oxide reductase
     RD1_3664 (dmsA)
Transporters [BR:rde02000]
 Other transporters
  Transmembrane electron carriers [TC:5]
   RD1_3664 (dmsA)
SSDB
Motif
Pfam: Molybdopterin Molydop_binding Molybdopterin_N Cytochrome_CBB3 Cys_rich_CPXG TAT_signal CDC48_N
Other DBs
NCBI-ProteinID: ABG33138
RoseoBase: RD1_3664
UniProt: Q162F5
Position
complement(3526289..3528961)
AA seq 890 aa
MSFSQPTRRSFLQGGAAVFGATSLMGTTALAALDPNSFDGRVFHATHYGPFEGVVRDGKL
VGLNTIMDIDARPTEMLTTGVMDRTYDKSRINYPMVRKSYLDGWETGDIKPELRGKEPYV
RVDWDTAWSLTAKALLDTATNHGNEAIFSSSYGGWSNAGTFRPNVLQGRLMNLIGGCTVT
AGDWSAGASQVALPHIIGDMEVYSTQSAWETIRDHCEVFVLVGCDPIKNNRVEYRVADHG
MYAHWETIRDSGVKFISINPQKTASDAYLDADWVQIVPNTDVALFCAMANHVLAEGLEDR
AYMAKYTVGADKWIAYVNGEEDGVAKTPEWAAEITGIEAAKIREMAELFAKSNTNIAGAW
ALQRAQHGEMTHWAIINFAALTGKIGKPGCGVGFSWHYGNGGMPASGKSNPAGLSQGRNF
VKTVCPASRITDMLENPGKEVFYNGNTHTYPDVKVVFNAGNNFMSHQQDTNRLIRALEKV
ETVVSVDVWWTAATRWADIVMPAASTLEQDDISSGGTYSNDKVYAMKKMIEPVGESLPDY
EIFEGLADTLGLWAQFTDGEDKMYHIRRAYEKSSAAAHTPFEEFWEKGFARQEVPEEARK
WTRHGAFFNDPEGNPLHTTSGKIEMFCEDFAKLDIDDMPGMPIWMEKHEYLGNAKEGQLH
VVSPHPWFRLHSQMDQSENLRALYKVQGREPVRINTQDAAARGIEDGDLVELYNDRGTVI
AGAVVSDEIMPGVVSIYEGAWPQLDSKGRCNSGLVNFLTSTQRSSGVAQATTANTTLCSM
RKCEDPEGPNLAYEKPAILEEYDYAAIDYDKIGVDRLYELTEKLYADMSPGEKIYFERCT
VCHAPREVTHFTQQQWKGITPSMFPRAGLDEAEAALVTEYLMQNASDAPK
NT seq 2673 nt   +upstreamnt  +downstreamnt
atgtccttttcccaaccgacccgacgcagctttttgcaaggtggtgccgctgtttttggc
gcaaccagcctgatgggcacaacggcgcttgcagcacttgatccgaactcttttgacggg
cgtgtgtttcacgcaacgcactacggcccgtttgaaggtgtcgtgcgcgacggcaagctt
gtcggcctcaacaccattatggacattgacgcccgcccaaccgagatgctgaccacgggg
gtgatggaccggacctatgacaagtctcgcatcaactatccgatggtgcgcaaatcctat
ctggacggctgggaaaccggtgacatcaagcccgagttgcgcggcaaggaaccctatgtc
cgtgtcgattgggacacggcctggagcctgacggccaaggcgttgctggacacggccaca
aaccacggcaatgaggcgatcttcagttcctcctacggtgggtggtccaacgcgggcacc
ttccgccccaacgtgctgcagggtcggttgatgaacctgatcgggggctgcaccgtgacc
gctggcgactggtcggcgggagcctcgcaggtcgcgctgccccatatcatcggcgatatg
gaagtctattcgacccaatccgcctgggagaccatccgcgatcactgcgaggtctttgtg
ctggtggggtgtgacccgatcaagaacaaccgtgtggagtaccgcgtggcggaccatggc
atgtatgcgcattgggaaaccatccgcgattcaggcgtgaagttcatctcgatcaacccg
cagaaaaccgcctctgacgcctatctggatgccgactgggtccagatcgtgcccaacacc
gatgtggcgctgttttgtgccatggccaaccacgtgctggccgagggtcttgaggaccgc
gcctatatggcgaaatacacggtcggtgctgacaagtggatcgcctatgtcaacggcgag
gaggatggcgttgcgaaaaccccggaatgggcggcggagatcaccgggattgaagctgcg
aaaatccgcgagatggcagagctttttgccaaatccaacaccaatatcgcgggggcctgg
gcgctgcaacgcgcacaacacggtgagatgacccattgggcgatcatcaactttgccgca
ctgaccggcaagatcgggaaaccgggctgcggtgtcggcttcagctggcactatggcaac
ggcggcatgccggcttcgggaaaatcgaacccggcgggcctgagccaggggcggaatttt
gtcaagaccgtctgcccggcgagccgcatcaccgacatgctggaaaaccccggcaaggaa
gtgttctacaacggtaacacccatacctatccggatgtgaaggtcgtctttaacgcgggc
aacaacttcatgagccaccagcaggataccaaccggctgatccgggcgctggagaaggtg
gaaaccgtggtcagcgtggatgtctggtggaccgcggcgacacgctgggctgatatcgtc
atgcctgccgcctcgacgctggaacaagatgatatctcctctggcgggacctattccaac
gacaaggtctatgcgatgaaaaagatgatcgaacccgtgggcgagagcctgccggattac
gagatcttcgaagggctggccgatacgctgggtctgtgggcgcagttcaccgatggcgag
gacaagatgtatcacatccgtcgggcctatgagaaatccagcgccgccgcgcataccccg
ttcgaagaattctgggaaaagggctttgcccgtcaggaggtgccggaagaggcgcgcaaa
tggacccgccacggggcgttctttaacgatcccgaaggcaacccgctgcacacaacctca
ggcaagatcgagatgttctgcgaggattttgccaagctcgacatcgacgacatgcccggc
atgccgatctggatggaaaagcacgaatacctcggcaacgccaaggagggccagttgcac
gtggtctcgccacacccgtggttccgtttgcacagccagatggaccagtcggaaaacctg
cgcgcgctttacaaggtgcaggggcgcgaaccggtgcggatcaacacgcaggatgccgcc
gcgcgcgggatcgaggacggtgatctggttgagctttacaacgaccggggcacggtgatt
gcaggcgctgttgtcagcgacgagatcatgcccggtgtcgtgtcgatctacgagggtgca
tggccgcagcttgacagcaaggggcggtgcaactcgggtctggtgaacttcctgacctcg
acacagcgttcgtccggtgtggcgcaggcaacgactgcgaataccaccctgtgttcgatg
cgcaaatgcgaggacccggaggggccgaacctcgcctatgagaaacccgcgatccttgag
gagtatgactatgccgcgattgactatgacaagatcggtgtcgatcgcctctatgagctg
accgaaaagctttatgcggatatgagcccgggcgagaagatctacttcgagcgctgcacg
gtctgccacgccccgcgcgaggtgacccactttacccagcagcagtggaagggcatcacc
ccatccatgttcccgcgcgcaggtctggacgaagccgaggcggctctggtgacagaatat
ctcatgcagaacgcctcggatgcaccaaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (37)   

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