KEGG   Rhizorhabdus dicambivorans: CMV14_22870
Entry
CMV14_22870       CDS       T05084                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
rdi  Rhizorhabdus dicambivorans
Brite
KEGG Orthology (KO) [BR:rdi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rdi03032]
    CMV14_22870
   03400 DNA repair and recombination proteins [BR:rdi03400]
    CMV14_22870
Enzymes [BR:rdi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     CMV14_22870
DNA replication proteins [BR:rdi03032]
 Prokaryotic type
  DNA Topoisomerases
   CMV14_22870
DNA repair and recombination proteins [BR:rdi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CMV14_22870
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Toprim_4
Other DBs
NCBI-ProteinID: ATE66903
UniProt: A0A2A4FX06
Position
complement(4842699..4845245)
AA seq 848 aa
MKLVVVESPAKAKTIEKYLGPGHRVLASYGHVRDLPAKDGSVDPDNGFAMEWEAYADKTK
QLKAIADEAKSADTLILATDPDREGEAISWHVQEVLAKRKALPKDVQRVTFNAITKPAIL
EAMANPRELDRDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVDRE
REIELFKPQEYWSVTADMEHDGIPFVARLARWKGQKIDRLTIGNGGDAAQAKADVEAGRF
AVASIETRPLTRNPSPPFTTSTLQQEAARKLGFSASHTMRIAQGLYEDGAITYMRTDGVQ
MDGSAISAARGAIANRYDASYVPDKPRQYQAKAKNAQEAHEAIRPTDFSKDRAGSGDHGR
LYDLIFKRALASQMASARLERTTVDLVDGTGQHGLRATGQVVLFPGYLALYEEGRDDEGD
EESRRLPRIKEGDAPAKKKVDSEQHFTQPPPRYSEASLVKKMEELGIGRPSTYASILQTL
KDRDYVTVEKNRFTPNESGRLVTSFLERFFERYVSYDYTAGLEESLDDVSGGRAGWQAVL
EAFWKDFKPKTAEVMEQKPSDITKALDEFLAPYLFPDKGDGTDPRLCPVCTQGQLSLRGG
RFGAFIACSNYPECKYTRRFAQAGGASDAGADAGPVVIGTDPDTGMEVSKRAGRFGPYIQ
LGDGKDAKRSSIPKDVPGEDLDLGWALKLLSLPRTIGAHPETGNPITASIGRFGPYLAHD
GKYARLGSTAEVFETGMNAAVAKLADAANGGGRQRGKTEPLKTFGDSPVTGKEVKLMAGR
FGPYVTDGETNATLPKSASPDELTAEQALELLAARAAKGPPAKGKKKAAPKKAPAAKKAP
AKKAAAKE
NT seq 2547 nt   +upstreamnt  +downstreamnt
atgaagctcgtcgtcgtcgaatcgcccgccaaggccaagaccatcgaaaaatatctgggg
ccgggccaccgcgtgctcgcttcctacggccatgtccgcgatctgccggccaaggacgga
tcggtggatcccgacaacggcttcgcgatggaatgggaggcctatgccgacaagaccaag
cagctcaaggcgatcgccgatgaggcgaagtccgccgacacgctgatcctggcgaccgac
cccgatcgcgagggcgaggcgatcagctggcatgtccaggaggtgctggccaagcgcaag
gcgctgcccaaggatgtccagcgcgtcaccttcaacgcgatcaccaagcctgcgatcctc
gaggcgatggcgaacccgcgtgagctggatcgcgatctgatcgacgcctatcgggcccga
cgcgcgctcgattatctggtcggcttcaccctgtcgccggtgctgtggcgcaagctgccg
ggcgccaagtccgcaggccgtgtccagtcggtggcgctgcgcctggtggtcgatcgcgag
cgcgagatcgagctgttcaagccccaggaatattggtcggtcaccgccgacatggagcat
gacggcatccccttcgtcgcgcgcctggcgcgctggaaggggcagaagatcgatcggctg
acgatcggcaatggcggcgatgcggcccaggccaaggccgacgtcgaggccggccgcttc
gcggtcgcgagcatcgagacccgcccgctcacccgcaacccctccccgcccttcaccacc
tcgaccctgcagcaggaggccgcccgcaagctcggtttctcggcgagccacacgatgcgc
atcgcgcaggggctctatgaggacggcgcgatcacctatatgcggaccgacggcgtccag
atggacggcagcgccatctcggcggcgcgcggcgcgatcgccaatcgctacgacgcttcc
tacgtgccggacaagccgcgccagtatcaggcgaaggccaagaatgcccaggaagcgcat
gaggcgatccgccccaccgatttttcgaaggatcgcgccggcagcggcgaccatggccgg
ctctacgatctgatcttcaagcgcgcgctggccagccagatggcttcggcgcggctggaa
cggaccacggtcgatctggtcgacggcaccggccagcacggcctgcgcgcgaccggccag
gtcgtcctcttccccggctatctcgcgctctacgaggaaggccgcgatgacgaaggtgat
gaggaatcgcgccgcctgccgcgcatcaaggagggcgatgctccggccaagaagaaggtc
gattcggagcagcatttcacccagccgccgccgcgttattcggaggcgagcctggtgaag
aagatggaggaactggggatcggccggccgtcgacctatgcctcgatcctccagacgctc
aaggaccgcgactatgtgacggtcgagaagaaccgcttcaccccgaacgagagcgggcgg
ctggtcaccagcttcctcgagcgcttcttcgagcgctatgtgagctacgactacaccgcc
gggctggaggagagcctggacgacgtctcgggcggccgcgccggctggcaggcggtgctg
gaggccttctggaaggacttcaagcccaagaccgccgaggtgatggagcagaagccctcg
gacatcaccaaggcgctcgacgaattccttgcgccctatcttttccccgacaagggcgac
ggcaccgatccgcgcctctgcccggtctgcacccagggccagttgtcgctacgcggcggg
cgcttcggcgccttcatcgcctgctccaactatcccgagtgcaaatatacccgccgcttc
gcccaggcgggcggcgcgagcgatgccggcgccgatgcggggccggtggtgatcggcacc
gatcccgatacggggatggaggtcagcaagcgcgcggggcggttcggcccctatatccag
ctcggcgacggcaaggatgccaagcgatcgtcgatcccgaaggacgtgccgggcgaggac
ctcgatctcggctgggcgctgaagctgctgtcgctgccgcgcaccatcggtgctcacccg
gaaaccggcaacccgatcaccgcctcgatcggccgcttcggcccttatctggcgcatgac
ggcaaatatgcgcggctcggctcgaccgccgaggttttcgagacgggcatgaacgcggcg
gtggcgaaactcgccgacgcggcgaatggcggcggccgccagcgcggcaagaccgaaccg
ctcaagaccttcggcgacagcccggtgaccggcaaggaggtcaagctgatggcgggccgt
ttcgggccctatgtcaccgacggcgagaccaacgcgaccctgccgaagtcggccagcccc
gatgagctgaccgccgagcaggcgctggaactgctcgcggcgcgggccgcgaaggggccg
ccggccaagggcaagaagaaggccgcgccgaagaaggcgccggctgccaagaaggcccct
gcgaagaaagctgcggccaaagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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