KEGG   Roseateles depolymerans: RD2015_4145
Entry
RD2015_4145       CDS       T04166                                 
Name
(GenBank) ribonuclease II
  KO
K01147  exoribonuclease II [EC:3.1.13.1]
Organism
rdp  Roseateles depolymerans
Brite
KEGG Orthology (KO) [BR:rdp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rdp03016]
    RD2015_4145
Enzymes [BR:rdp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     RD2015_4145
Transfer RNA biogenesis [BR:rdp03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    RD2015_4145
SSDB
Motif
Pfam: RNB
Other DBs
NCBI-ProteinID: ALV08594
UniProt: A0A0U3LQ76
Position
4820157..4822199
AA seq 680 aa
MFALFEDAGKFLAGRVMSEAESSMQIELDSGKRVKVKSANVLLKFDKPSPAELMADGQRL
AQEIDLDLAWEFAPETEFGFADLARDYFDVKATLSQQAGALFRLFEAPHYFRRMGRGQFK
KAPADIVKAALLGIERKKQIAAQIEEWATELAAGRCPAPIAEQIYRILFRPDKNGPEYKA
LVEAARRSQKAPLDLLKDAGAITSPYQFHWKRFLFEHFPKGTGFPALSAPAIKDELPLAS
VRAFSIDDSATTEIDDALSVQGLGTGTVVFGVHIAAPGLAIQPDSPVDKVARDRFSTVYM
PGWKLTMLPDEVVQAYTLIEGRDCPAVSIYLTLDEATLEITGRETRLERVPIAANLRHDK
LDKVITDATLTGAEPADYDFAPELAFAYRLARDLKAKREVVRGKPETFNRPDYNFRLECN
GDHEPDGSEQVSIGVRQRGAALDLIVAEAMILANSSWGAYLAECGVPGIYRSQASLAPGI
KVRMGTKPAPHAGMGVSQYTWATSPLRRYVDLVNQWQIIACARHGRTAALVAPFKPKDAQ
LFSIISGFDAAYSAYNGFQSGIERYWTLRYLKQQGITELTASVMKEGLVRADDLPLVFRA
LGCEQLPRHAHVKVRITGLDELTLDVHASLIERLDTNDAAQDAGDAEEDEEPSGVLTLAI
DVNAEDAAGAPSEPAPPGAA
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgtttgccctcttcgaagacgccggaaaatttctcgccggccgcgtgatgtccgaagcc
gaatcctcgatgcaaatcgaactggattcaggcaagcgcgtcaaagtgaaatccgccaat
gtgctgctgaagttcgacaagccctccccggccgaactgatggcggacggccagcggctg
gcccaggagatcgacctggacctggcctgggaatttgcgcccgagaccgaattcggtttt
gcggacctggcccgcgactatttcgacgtcaaggccaccctcagccagcaggcgggtgcg
ctgttcaggctgttcgaggcgccgcattacttccggcgcatgggccggggccaattcaag
aaggcgccggcggacatcgtcaaggcggcgctgctgggcatcgagcgcaagaagcagatc
gccgcccagatcgaggaatgggcgaccgagctggccgccggccgctgcccggccccgatt
gcggagcagatctaccgtatcttgttccgccccgacaagaacggcccggaatacaaggca
ttggtggaagcagcccgccgcagccagaaggcgccgctggacctgctcaaggatgcaggg
gccatcaccagcccttatcaattccactggaagcgcttccttttcgagcacttccccaag
ggcaccggcttccccgccctgtccgctccggccatcaaggacgagctgccgctggcgtcg
gtgcgcgccttctccatcgacgactccgccaccacggaaattgacgacgcactgtcggtg
cagggcctgggcaccggcacggtggtgttcggcgtgcacattgccgcgccgggtctggcc
atccagccggactcgccggtggacaaggtcgcgcgggaccgcttcagcaccgtctacatg
ccgggctggaagctcaccatgctgcccgatgaggtggtgcaggcctacacgttgatcgaa
ggccgggactgccccgccgtcagcatctacctgaccctggacgaggcgacgctggagatc
accggccgcgaaacgcgcctggagcgggtgcccatcgccgccaatctgcgccacgacaag
ctggacaaggtcatcaccgacgccacgctcaccggcgccgaacccgcggactacgacttc
gcccccgaactggcctttgcctaccgcctggcccgggacctcaaggccaagcgcgaagtg
gtgcgcggcaagcccgaaaccttcaaccggccggactacaacttccgcctggaatgcaac
ggcgaccatgaaccggacggcagcgagcaggtcagcatcggcgtgcgccagcgcggcgcg
gcgctggacctcatcgtggccgaggccatgatcctggccaacagcagctggggcgcctac
ctcgccgaatgcggcgtgcccggcatctaccgcagccaggccagcctggcgcccggcatc
aaggttcgcatgggcaccaagccggcgccgcatgcgggcatgggcgtgtcgcaatacacc
tgggccacttcgccgctgcgccgctatgtcgacctggtcaatcagtggcagatcattgcc
tgcgcccgtcatggacgtaccgccgccctggtggcgccgttcaagcccaaggatgcgcag
ctcttctccatcatctccggcttcgatgccgcctacagcgcctacaacggcttccagtcc
ggcatcgagcgctactggacgctgcgctacctgaagcagcagggcatcaccgagctgacc
gcctcggtcatgaaggaaggcctggtgcgcgccgacgacctaccgctggtcttccgcgcc
ctgggctgcgaacagttgccccgtcacgcccatgtgaaggtgcgcatcaccggcctggat
gaactgacgttggacgtgcacgccagcctgatcgagcgtctggacacgaacgacgcggcg
caggatgccggcgacgccgaagaggatgaagagcccagcggcgtgctcaccctggccatc
gacgtcaatgcggaggacgccgctggcgctccttctgaaccggcgcccccgggcgctgcc
tga

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