KEGG   Rhodococcus erythropolis BG43: XU06_04020
Entry
XU06_04020        CDS       T03842                                 
Name
(GenBank) ATPase AAA
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
reb  Rhodococcus erythropolis BG43
Pathway
reb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:reb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    XU06_04020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:reb03400]
    XU06_04020
Enzymes [BR:reb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     XU06_04020
DNA repair and recombination proteins [BR:reb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     XU06_04020
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_30 UvrD_C_2 PDDEXK_1 Viral_helicase1 ResIII Olduvai
Other DBs
NCBI-ProteinID: AKD96042
Position
871463..874780
AA seq 1105 aa
MDFDLLGPLPTGTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR
ERARERFAGVSAALVDPEAARRSDDDLVSYLATADDEEIGVRRRRLLRALAEFDAGTITT
THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA
IARSAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVERRKRTKGIRDFNDLLTLLHGVL
TDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAFR
GAEVLSYLDAVNQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKKS
RLSGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVGLLGSDARLAVDGDP
RPVEPGDVAVLVRTHKQVAMIRDALDAVGVPSVLTGGSSVFATPSATQWLWLLQAIEQPH
RSDRVRLTALSPIFGRTAEELDVDGDNVVAELAGQLRSYSGLFARVGFAAVFERISAETN
LEKRVLAASSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSATDRSR
RLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPDGRRILDVGGQEG
PGHNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIA
EPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVQWSGAAANVTELAAARFD
RDLDTLWRRTSYSALTAGAHHAVTSTDSEVEDPEKDDEPEDSVDVGTVTPSPLEALPSPM
NGLPAGAAFGTLVHEVLEVVDTAASDLRAELRIRCAEAVSVRAAEVDSEALADALLLVMQ
TPLGFGTLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLPPDDILASYA
DHLERVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMATEMM
RSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPP
AQLTVELSDLLAGLDASHTVGEKIR
NT seq 3318 nt   +upstreamnt  +downstreamnt
gtggacttcgaccttttggggccgctaccgaccggcaccacggtgttggaagcgagcgcc
ggaactggcaagacctacgcgatcgtcggactcgcgacccgttgtgttgccgaaggtctc
gctgacatttcgcaagttctgctggtgacattcagccgggccgccactcaggaacttcgt
gagcgtgccagggagaggttcgccggagtgtccgccgctctggtcgacccggaggcggcg
aggcggtcggatgatgatctggtgtcgtacctcgccacagctgacgacgaggagatcggc
gtgcggcgtcgtcgactcctgcgcgctctcgcggagttcgacgccggcaccatcacgacc
acccacagtttctgtcagaggatgctcgacggactcggcatcgccggggaacgcgaaccc
gacacaacttttgtggagtcggtcgacgacctgatcagtgaggtcgtctcggatttgtac
ctcagccgctacagccggacggactcgtctccaccgttttccacgaaggacgcgctggcc
attgcccgaagcgcagtcggcgatggccaggcaattctcgaacccgacggcgaggaggag
accgctcccggtcagcgagtcctgttcgcggcggctgctcgtctcgaggttgaacgacgt
aagcggaccaaaggaattcgcgacttcaacgatctcctgacgctgctgcacggcgtgttg
acggatccggaatacggccccgtcgcgtgccgtcgggtgcgcgagaagttcaaggtcgtg
ctgatcgacgagttccaggacaccgatccgttgcagtgggacattctgcggttggccttc
cacggtcacaccaccctggtcctggtcggtgatcccaaacaagccatctatgcgttccgc
ggggcagaagtcctgagttatctcgatgcggtcaatcaggcggatgcgcaccaggagttg
accaccaattggcgcagcgatccagggttgttggcggcactcgaacacctctacggcggc
gccgcactgggtaacgagggcatcgtcgcgcatccagtagaggcttcgcacaagaagtct
cggttgtccggcccggtgccgatgcgtgtacgccatctgccgcgtaccggagccggaccg
ctcaatcgttcgggatttccggccgtcggcagacttcgcagtcgcgtcgccgacgacgtc
gcagcagacgtggtcggactgctgggcagcgatgcccgcttggcagtcgacggtgatccg
cgcccggtcgagccgggagacgtcgcggtattggtgcgcacccacaagcaggtggcgatg
attcgcgatgccctcgatgccgtaggtgtaccgtccgtattgaccggcggttccagtgtt
ttcgcgacacccagcgcaacacagtggctgtggctgctgcaggcgatcgagcagccacac
cggtctgatcgcgtccggttgaccgccctctctccgattttcgggcgcaccgccgaagaa
ttggacgtcgatggcgacaacgtcgtcgcggaactcgcgggtcaactgcgctcgtactcc
gggttgttcgcacgcgtcgggttcgcggccgtgttcgaaaggatctccgccgaaacgaat
ctggagaagcgtgtactcgcggcctcgtccggcgaacgagatttcaccgatctgcggcac
gtcgcacaacttctcggccgcgtcgccaccgaggaagcgttcgggttgagcgcattggtt
cgctggctctccgatcggatcaaggacccgacgtccgggagtgccaccgacagaagccgt
cgcctcgacagcgatgctgccgctgtacaaatcgcaaccgtgcacgccaccaaagggctc
gaattcccgatcgtctacgtcccgttcagttgggagagcgtgggcggcttcaactctccg
acgcagttgttgcacgatccggatgggcgccgcatcctcgacgtcggtgggcaggaaggc
ccggggcacaacgccagaaagactgttgcggaggctgaagaagcgggcgaagaactgcgg
ctgctgtacgtggcgctgacccgggcgcagtgccaactagtgctctggtgggcgcccagc
tacgggacctcacgctcgccactgcaccggttgatgctcggacgtacacccggcatcgcc
gaacctgctcgggtagtgaaggtgctcgacgacggtacaaccgcagcacgactcgcgacg
tggccggcagcagcttccgatgtgatctcggtggaaccagtaggtccacatccaccgtcg
cccgtccagtggtccggtgcagccgcgaacgtgaccgaactggccgcggcgcgtttcgat
cgagacctggacactctctggcgtcgtacgtcgtactcggcactgaccgccggagcgcac
cacgcggtcacgagcaccgacagtgaggtagaggatcccgaaaaggacgacgagccggag
gattccgtagacgtcgggaccgtcaccccctcaccgctggaggcgttgccttcaccgatg
aacggtcttccggcgggcgccgcattcggcacgctggtgcatgaagtgctcgaggtggtg
gacactgctgcttcagacctgagagcggaactccgtatacgctgcgcggaggcggtctcg
gttcgggcggccgaggtcgactccgaagcactcgcggatgcgttgttgctggtgatgcag
actccactgggattcggaaccttggccacgatcgcgccgaaagatcgtcttcccgaactc
gatttcgaactcccactggccggtggcgacgatccggtgtcgatgagtgtcacacttcgc
ggagtgtcggaactgttgaggcgacaccttcccccggacgacattctggcgtcttacgcc
gaccatcttgagcgtgtcgagacgtcaccgatgcgcgggttcctgacgggcagtatcgac
gccgtcttgcggatcccgggcccgtcgttcgtgatcgtcgactacaagacaaatcggctg
ggccgcggcgatctgacggctgccaactacacgcgcgaactcatggcgacggagatgatg
cgctcgcactatcccttgcaggcactgctgtattcggttgcgctgcatcggtatctgcgg
tggcgactgcccgactacgatccgcatcgccatctcgggggtgcgcagtatcaattcgtg
cgtgggatgctcggcccggacagtccgccggaatgtggtgtattcgaatggaaaccgcct
gctcagctgacggttgaactatcggatctgctggccggtcttgatgcgtcccacacagta
ggggagaagattcgatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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