LOCUS NC_002127 3306 bp DNA circular CON 03-AUG-2016
DEFINITION Escherichia coli O157:H7 str. Sakai plasmid pOSAK1, complete
sequence.
ACCESSION NC_002127
VERSION NC_002127.1
DBLINK BioProject: PRJNA57781
Assembly: GCF_000008865.1
KEYWORDS RefSeq.
SOURCE Escherichia coli O157:H7 str. Sakai
ORGANISM Escherichia coli O157:H7 str. Sakai
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (sites)
AUTHORS Makino,K., Ishii,K., Yasunaga,T., Hattori,M., Yokoyama,K.,
Yutsudo,H.C., Kubota,Y., Yamaichi,Y., Iida,T., Yamamoto,K.,
Honda,T., Han,C.G., Ohtsubo,E., Kasamatsu,M., Hayashi,T., Kuhara,S.
and Shinagawa,H.
TITLE Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an
enterohemorrhagic Escherichia coli O157:H7 derived from Sakai
outbreak
JOURNAL DNA Res. 5 (1), 1-9 (1998)
PUBMED 9628576
REFERENCE 2 (bases 1 to 3306)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3306)
AUTHORS NCBI Microbial Genomes Annotation Project.
TITLE Direct Submission
JOURNAL Submitted (24-FEB-1998) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AB011548.
RefSeq Category: Reference Genome
CLI: Clinical Isolate
PHY: Based on Phylogenetics
Sequence updated (09-Apr-1999).
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3306
/organism="Escherichia coli O157:H7 str. Sakai"
/mol_type="genomic DNA"
/strain="Sakai"
/sub_strain="RIMD 0509952"
/serovar="O157:H7"
/db_xref="taxon:386585"
/plasmid="pOSAK1"
/note="RIMD 0509952 is a strain of enterohemorrhagic E.
coli, EHEC O157:H7"
misc_feature 1..3306
/note="REFSEQ gene predictions performed by GeneMark
2.4/GeneMark.hmm 2.0 with comparison to original submitter
provided annotation."
gene 413..736
/gene="mobA"
/locus_tag="pOSAK1_01"
/db_xref="GeneID:1789662"
CDS 413..736
/gene="mobA"
/locus_tag="pOSAK1_01"
/codon_start=1
/transl_table=11
/product="plasmid mobilization"
/protein_id="NP_052604.1"
/db_xref="GeneID:1789662"
/translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLR
AAALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLS
RLMAD"
misc_feature 437..730
/gene="mobA"
/locus_tag="pOSAK1_01"
/note="conjugal transfer transcriptional regulator TraJ;
Region: PRK13877"
/db_xref="CDD:184361"
gene complement(971..1351)
/locus_tag="pOSAK1_02"
/db_xref="GeneID:1789661"
CDS complement(971..1351)
/locus_tag="pOSAK1_02"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_052605.1"
/db_xref="GeneID:1789661"
/translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKK
KSKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKK
NFDKINVNLLSKATSFALKKGIPI"
misc_feature complement(1010..1294)
/locus_tag="pOSAK1_02"
/note="Antitoxin to bacterial toxin RNase LS or RnlA;
Region: RnlB_antitoxin; pfam15933"
/db_xref="CDD:406375"
gene complement(1348..2388)
/locus_tag="pOSAK1_03"
/db_xref="GeneID:1789663"
CDS complement(1348..2388)
/locus_tag="pOSAK1_03"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_052606.1"
/db_xref="GeneID:1789663"
/translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTY
KGIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDD
DRANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQ
IASLINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQL
SCSLIMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKY
IIREIHQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVC
QLIDGGVARLKL"
misc_feature complement(2149..2373)
/locus_tag="pOSAK1_03"
/note="RNase LS, bacterial toxin N-terminal; Region:
RnlA_toxin_N; pfam19417"
/db_xref="CDD:437249"
misc_feature complement(1867..2121)
/locus_tag="pOSAK1_03"
/note="RNase LS, bacterial toxin; Region: RnlA_toxin;
pfam15935"
/db_xref="CDD:406376"
misc_feature complement(1453..1818)
/locus_tag="pOSAK1_03"
/note="RNase LS, bacterial toxin C terminal; Region:
RnlA-toxin_C; pfam19034"
/db_xref="CDD:408804"
CONTIG join(AB011548.2:1..3306)
//