LOCUS NC_003904 31317 bp DNA circular CON 29-JUN-2025
DEFINITION Streptomyces coelicolor A3(2) plasmid SCP2, complete sequence.
ACCESSION NC_003904
VERSION NC_003904.1
DBLINK BioProject: PRJNA224116
BioSample: SAMEA1705940
Assembly: GCF_000203835.1
KEYWORDS RefSeq; TraA; TraB; TraX; IS1648; Tn5714; transposase; bldA
regulation; plasmid transfer; GntR-family regulator; partitioning
protein ParA.
SOURCE Streptomyces coelicolor A3(2)
ORGANISM Streptomyces coelicolor A3(2)
Bacteria; Bacillati; Actinomycetota; Actinomycetes;
Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces
albidoflavus group.
REFERENCE 1 (bases 1 to 31317)
AUTHORS O'Rourke,S., Wietzorrek,A., Fowler,K., Corre,C., Challis,G.L. and
Chater,K.F.
TITLE Extracellular signalling, translational control, two repressors and
an activator all contribute to the regulation of methylenomycin
production in Streptomyces coelicolor
JOURNAL Mol Microbiol 71 (3), 763-778 (2009)
PUBMED 19054329
REFERENCE 2 (bases 1 to 31317)
AUTHORS Corre,C., Song,L., O'Rourke,S., Chater,K.F. and Challis,G.L.
TITLE 2-Alkyl-4-hydroxymethylfuran-3-carboxylic acids, antibiotic
production inducers discovered by Streptomyces coelicolor genome
mining
JOURNAL Proc Natl Acad Sci U S A 105 (45), 17510-17515 (2008)
PUBMED 18988741
REFERENCE 3 (bases 1 to 31317)
AUTHORS Borodina,I., Krabben,P. and Nielsen,J.
TITLE Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism
JOURNAL Genome Res 15 (6), 820-829 (2005)
PUBMED 15930493
REFERENCE 4 (bases 1 to 31317)
AUTHORS Bentley,S.D., Chater,K.F., Cerdeno-Tarraga,A.M., Challis,G.L.,
Thomson,N.R., James,K.D., Harris,D.E., Quail,M.A., Kieser,H.,
Harper,D., Bateman,A., Brown,S., Chandra,G., Chen,C.W., Collins,M.,
Cronin,A., Fraser,A., Goble,A., Hidalgo,J., Hornsby,T., Howarth,S.,
Huang,C.H., Kieser,T., Larke,L., Murphy,L., Oliver,K., O'Neil,S.,
Rabbinowitsch,E., Rajandream,M.A., Rutherford,K., Rutter,S.,
Seeger,K., Saunders,D., Sharp,S., Squares,R., Squares,S.,
Taylor,K., Warren,T., Wietzorrek,A., Woodward,J., Barrell,B.G.,
Parkhill,J. and Hopwood,D.A.
TITLE Complete genome sequence of the model actinomycete Streptomyces
coelicolor A3(2)
JOURNAL Nature 417 (6885), 141-147 (2002)
PUBMED 12000953
REFERENCE 5 (bases 1 to 31317)
AUTHORS Redenbach,M., Ikeda,K., Yamasaki,M. and Kinashi,H.
TITLE Cloning and physical mapping of the EcoRI fragments of the giant
linear plasmid SCP1
JOURNAL J Bacteriol 180 (10), 2796-2799 (1998)
PUBMED 9573173
REFERENCE 6 (bases 1 to 31317)
AUTHORS Redenbach,M., Kieser,H.M., Denapaite,D., Eichner,A., Cullum,J.,
Kinashi,H. and Hopwood,D.A.
TITLE A set of ordered cosmids and a detailed genetic and physical map
for the 8 Mb Streptomyces coelicolor A3(2) chromosome
JOURNAL Mol Microbiol 21 (1), 77-96 (1996)
PUBMED 8843436
REFERENCE 7 (bases 1 to 31317)
AUTHORS Haug,I., Brolle,D., Weissenborn,A., Kieser,T., Wohllebens,W. and
Altenbuchner,J.
JOURNAL Unpublished
REFERENCE 8 (bases 1 to 31317)
AUTHORS Kieser,T., Bibb,M.J., Buttner,M.J., Chater,K.F., Hopwood,D.A.,
Kieser,T., Bibb,M.J., Buttner,M.J., Chater,K.F. and Hopwood,D.A.
JOURNAL Unpublished
REMARK ISBN 0-7084-0623-8.
REFERENCE 9 (bases 1 to 31317)
AUTHORS Bentley,S.D., Parkhill,J., Barrell,B.G. and Rajandream,M.A.
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2001) Streptomyces coelicolor sequencing project,
Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge
CB10 1SA E-mail: barrell@sanger.ac.uk Plasmid supplied by Prof.
David A. Hopwood, [3] John Innes Centre, Norwich Research Park,
Colney, Norwich, Norfolk NR4 7UH, UK
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
AL645771.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Name :: GCF_000203835.1-RS_2025_06_29
Annotation Date :: 06/29/2025 07:00:47
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.10
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 8,274
CDSs (total) :: 8,187
Genes (coding) :: 7,996
CDSs (with protein) :: 7,996
Genes (RNA) :: 87
rRNAs :: 6, 6, 6 (5S, 16S, 23S)
complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)
tRNAs :: 66
ncRNAs :: 3
Pseudo Genes (total) :: 191
CDSs (without protein) :: 191
Pseudo Genes (ambiguous residues) :: 0 of 191
Pseudo Genes (frameshifted) :: 85 of 191
Pseudo Genes (incomplete) :: 132 of 191
Pseudo Genes (internal stop) :: 13 of 191
Pseudo Genes (multiple problems) :: 37 of 191
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..31317
/organism="Streptomyces coelicolor A3(2)"
/mol_type="genomic DNA"
/strain="A3(2)"
/db_xref="taxon:100226"
/plasmid="SCP2"
gene join(30883..31317,1..108)
/locus_tag="SC_RS01865"
CDS join(30883..31317,1..108)
/locus_tag="SC_RS01865"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014043484.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152351.1"
/translation="MTETQAALYAAAVGALSALVVGCIAGWAALRQVAKTAEAQHKQA
DWQLRSEDYANFVRAMFRFRASVGHAAEASQLSADLANEVRAHYADLANVAATLSMRI
AADPVMDAMIGLVNCAYALHSRVTDRRQLYLPSRDAAMDRLLEEFEDAEFAVRNAFRD
DLWGGESLRRSRPVGTSTDP"
gene 492..1372
/locus_tag="SC_RS01870"
CDS join(492..852,852..1372)
/locus_tag="SC_RS01870"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558180.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS5-like element IS1648 family transposase"
/protein_id="WP_086558180.1"
/translation="MGRGDLTNREWSLLEPHLPPLGGRGGRWNDHRTVVNGILFRVRT
GVPWRDLPERYGSWKTIYERHRRWSADGTWDRILQSVQADADLAGRIDWSMVGVDSTS
CRAHQHAAGARKTRPRVPKKRTTPRHHRPDEGLGRSRGGLTCKIHLAGEGGCRPLALL
LTPGQWGDAPQLVEVLDRIRVPRPLGGRPRTRPDHVSGDKAYSSRRNRRYLRRRRIRH
TIPEPKDQRANRRRRGREGGRPAGFDRDHYRRRNEVERTINRLKNFRAVATRYDKRAY
VFHGTVTAAAIRLWLRQ"
gene complement(3033..4010)
/locus_tag="SC_RS01875"
/old_locus_tag="SCP2.04c"
CDS complement(3033..4010)
/locus_tag="SC_RS01875"
/old_locus_tag="SCP2.04c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039581.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039581.1"
/translation="MSRRSLALPSTRSTEPDDADELEAAPEEKLAAARSAGVVASLTG
ADLSTPLTVAQLPTPYDVAETVTAPLNDQERGYLDVCEQALHGFRKSVVVAGKALEVI
NRGRLYRETHETFADYVTEVWDMKRAHAYRMIEGWRPADLVSPIGDINEGQARELAPV
LKEYGPEVTVTLYRGVKELRGDRRVTAADLSEARAALPPPKHLARPDQVRDVLTVAAA
EGRAPRLAPAEPKVPAQAADEHQAEQVDEGGVSQDQVDEGAEAIATLEAAVAQQRQIY
DRVGGGTLAAALLYDPGRGDHLRRELRQYAQRTAYRARDTSGEQVADDA"
gene complement(4007..4939)
/locus_tag="SC_RS01880"
/old_locus_tag="SCP2.05c"
CDS complement(4007..4939)
/locus_tag="SC_RS01880"
/old_locus_tag="SCP2.05c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039582.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/GO_function="GO:0016887 - ATP hydrolysis activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParA family protein"
/protein_id="WP_011039582.1"
/translation="MTESPRAALPSLNSPPGDRLEIVNGWDADTPYQSWRPQILVPPT
FRQASAPRVFVVVNQKGGAGKTTTTVELAAAWAAAGHRVRVIDADHQEAALSAWLLPQ
YPEGSERHSLRSVFFEDCTLAEATYPTLFAGVDVVPSSVDLQRVEYERPIGAEQGLAA
ALAQEAEEAGGRSPYDVTLIDAAPSLGLVTVAALTAADEALVPIKVGGLDMKAMASLH
KTLRSVQRKTNPKLSVGAVLLTAWDKSTFARQLATKVSEDYPEAAVVPIRRSIRASEA
PLSEEPIRLYAPEAAPAGDYDQAAAVLLPGRAAA"
gene complement(5312..5449)
/locus_tag="SC_RS01885"
CDS complement(5312..5449)
/locus_tag="SC_RS01885"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152353.1"
/translation="MKCTICGHPGSHTVLLDPPDRPLPERCTEQCARCRQEATVEQQE
G"
gene 5617..5886
/locus_tag="SC_RS01890"
/old_locus_tag="SCP2.06"
CDS 5617..5886
/locus_tag="SC_RS01890"
/old_locus_tag="SCP2.06"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039583.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152354.1"
/translation="MTIVVLRELRKELSEDFGPGDAVDRIEAVHAAPADSDVSGDPDD
RTFCGKPTLDMERVNYQPVGPGAPWLPPNMHAWECRDCAAALRSR"
gene complement(5935..7050)
/locus_tag="SC_RS01895"
/old_locus_tag="SCP2.07c"
CDS complement(5935..7050)
/locus_tag="SC_RS01895"
/old_locus_tag="SCP2.07c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039584.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006310 - DNA recombination [Evidence
IEA]"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="site-specific integrase"
/protein_id="WP_011039584.1"
/translation="MGETGRQLAVVTADADVVEAELVDDETAGASVVVHTDRDRHLSP
ETVAAIAASVADSTRRAYGTDRAAFAAWCAEEDRTAVPASAETMAEWVRHLTVTPRPR
TQRPAGPSTIERAMSAVTTWHEEQGRPKPNMRGARAVLNAYKDRLAVEKAEAAQARQA
TAALPPQIRAMLAGVDRTTLAGKRNAALVLLGFATAARVSELVALDVDTVTEAEHGYD
VTLYRKKVRKHTPNPILYGTDPATCPVRALRAYLAALAAAGRTDGPLFVRVDRWDRLA
PPMTRRGRVIGDPAGRMTAEAAAEVIERLAVAAGLSGDWSGHSLRRGFATAARAAGHD
PLEIARAGGWVDGSRVLARYMDDVDRVKNSPLVGIGL"
gene 7201..7386
/locus_tag="SC_RS01900"
/old_locus_tag="SCP2.08"
CDS 7201..7386
/locus_tag="SC_RS01900"
/old_locus_tag="SCP2.08"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039585.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039585.1"
/translation="MTQSKHLVKARDFAEQSAELLPEIDDPGVKAQTLALLAIAHAVL
ETGFDIDNVRSAIESNG"
gene complement(7612..7749)
/locus_tag="SC_RS01905"
/old_locus_tag="SCP2.09c"
CDS complement(7612..7749)
/locus_tag="SC_RS01905"
/old_locus_tag="SCP2.09c"
/inference="COORDINATES: protein motif:HMM:NF021057.6"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="TIGR02391 family protein"
/protein_id="WP_192963555.1"
/translation="MYVAIRNPIAHELGDELKEHEALEQLAAFSLLARWVDDATVETA
V"
gene 7832..8431
/locus_tag="SC_RS01910"
CDS 7832..8431
/locus_tag="SC_RS01910"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_192963554.1"
/translation="MKVMLGAVAAGLVFGALTSVTNVLSSPYGEIGARVTGSVLGDTS
RVLSLLLDAGWAWAALAVAVGWMAGTRSRGASCGVAALTCATVSYYVVDLYLWDAGTD
MIAWLVFGVPAGLILGLVGALIRRPGWTGLIAALVVPVGAAVQMTVMPPGAGLIVAFP
AAVAAGFVWTGAVLTAAVAVHRFWRQRRVLPVVERTSTP"
gene complement(8441..9286)
/locus_tag="SC_RS01915"
/old_locus_tag="SCP2.10c"
CDS complement(8441..9286)
/locus_tag="SC_RS01915"
/old_locus_tag="SCP2.10c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003978807.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS5 family transposase"
/protein_id="WP_011039382.1"
/translation="MPLTSRQRRYPSDTTVAEWALIEPLLPVPACRTKTGGRPEKWHR
REIVDAIRYVVDNGIKWRALPADYPPWQTVYYHFARWHRAGVVAFLRDQLRRQIRTGQ
GRCPWPVTLIVDSQSVKGAETVSKATRGFDAGKKINGRKRHIAVDTLGLPVMITVTPA
DTTDRDAARELLWRLRVMQPQITQIWADSAYAGQLTTWSDDFLNMTLKTVSRPRGAKG
FVVLPRRWKVERTLGWIMKARRNVRDYERLPQHSEAHLTWALITLMTRRLTRKGSRPN
WSRKR"
gene complement(9304..9726)
/locus_tag="SC_RS01920"
/old_locus_tag="SCP2.11c"
CDS complement(9304..9726)
/locus_tag="SC_RS01920"
/old_locus_tag="SCP2.11c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039381.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039381.1"
/translation="MPGRRRGGQAQPLSEHYGDLVRVALMEARPAGLQTKQLVAATRL
TPSQVARGVRHLRDVGAAEHLTPIIWRRKDGYLFSDEPADWIEYEKKQFRLVLGRLTR
LITGTLDPHLARHPDDEWAQLASAQLTGVRATLAQLTK"
gene complement(9731..10732)
/locus_tag="SC_RS01925"
/old_locus_tag="SCP2.12c"
CDS complement(9731..10732)
/locus_tag="SC_RS01925"
/old_locus_tag="SCP2.12c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_018522422.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF6192 family protein"
/protein_id="WP_011039380.1"
/translation="MSDRVGNVSRTRYEQLVAEARELVAQVAKAQFGLGDKALEIEPM
RPVGGSMPKGTEELFTVEESLQMFADDIGVALSTVMDWRWVSSRWPAGKRKDGVSWTV
HKILASIPDEAERWVAIEDAPFNSRSGKRQWTTDGAKRLVGQQVDRPVTVEEKVRAVK
DLTRDDEVAVKVTASLLSRPETASALPAADRVRVVKELTRDDEVATHVTSELLQRPRV
ARQTMRNDDTRFTVNRAQFDNSEETREKIRDRVPAVRQIEHTIEYLDLVGSCHQYVAT
LGRLVPRMRDQEFTEDERETIRRGIAKVRGAADWLEAAIDSGQFTLDEQLAQLLKGE"
gene complement(11292..11840)
/locus_tag="SC_RS01930"
/old_locus_tag="SCP2.13c"
CDS complement(11292..11840)
/locus_tag="SC_RS01930"
/old_locus_tag="SCP2.13c"
/inference="COORDINATES: protein motif:HMM:NF021057.6"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="TIGR02391 family protein"
/protein_id="WP_319152337.1"
/translation="MTQINREWAITRLETFIDTAALQTTTHGYIALANPLATVQAEAQ
IAEQILDKVLPGWRTADWKKRSAAFWREREAAHRAIAQLRAEQELADNLGSGAPQLDA
STMHPWVWGSIQGLWSSGHYRQAVGMAATAVNAQAQTKVSRRDLSEWKLFGDAFSTKP
PEPGKPRLRLSVNDGSDTWRSQ"
gene 12053..12193
/locus_tag="SC_RS01935"
CDS 12053..12193
/locus_tag="SC_RS01935"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152338.1"
/translation="MGLPGGAGRRSDGGEMDVFTPLEALRSPGAVACSECGADVALGP
LA"
gene complement(12228..12434)
/locus_tag="SC_RS01940"
CDS complement(12228..12434)
/locus_tag="SC_RS01940"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019521098.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152339.1"
/translation="MIVRFAGGPLVGRVLWTSWTAWPGGWLRPEGGDWALYRPVHRDQ
ASGIVLAEVQETGAVASGRGPVDG"
gene complement(13054..13797)
/locus_tag="SC_RS01945"
CDS complement(13054..13797)
/locus_tag="SC_RS01945"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="WP_430981108.1"
/translation="MASAAQLAARPAVPRLPDGTYAVPDPHDPEVTTLWRVTGGGLHP
WPLRQRWAPRPPAADPDIQPEERRAHRERWYAEVYWPWKAAVAEEIRRVPRTAADLFD
RLVPEHARPRAVFAALLDGRPTREELDEAERQEERADRDHLRIVAVLAAAGLPYRHIA
RAFRVSTSTAWHWAQRGTALWHQENAPEAWRPLSPHSRPWTTSRPAQPLYGPHSAQHR
PHRPRTLTRTLTRRSPRGHGPGSASTRRT"
gene complement(13902..14132)
/locus_tag="SC_RS01950"
CDS complement(13902..14132)
/locus_tag="SC_RS01950"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_430981109.1"
/translation="MTPGTAPGGWRPQRSATASPTGTTSPRATEPPAEPFGWITRDVL
EAAAADLARQEEAFEQARVPPSARAAGKAGPR"
gene complement(14867..15088)
/locus_tag="SC_RS01955"
/old_locus_tag="SCP2.15c"
CDS complement(14867..15088)
/locus_tag="SC_RS01955"
/old_locus_tag="SCP2.15c"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="DNA-binding protein"
/protein_id="WP_319152343.1"
/translation="MGTTDEGPEWLTRKQFAAAVQVHVGTVSRWIAADPEMRVQRLGP
TGHRVRIHRSEVDRHRTGTSPIGDTTATG"
gene complement(15261..15611)
/locus_tag="SC_RS01960"
/old_locus_tag="SCP2.16c"
CDS complement(15261..15611)
/locus_tag="SC_RS01960"
/old_locus_tag="SCP2.16c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039590.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039590.1"
/translation="MSDFPPGVTATIRHALVLNLLEAHRRAGDDLPACDLYPDIIRAL
KWVHSQDPDRAVWLAWHALEEVGGYTRSDEDGPSAEAVARCLRFSLTRETPPFDKWSE
DEADRFVTAALIKR"
gene complement(15706..15957)
/locus_tag="SC_RS01965"
/old_locus_tag="SCP2.17c"
CDS complement(15706..15957)
/locus_tag="SC_RS01965"
/old_locus_tag="SCP2.17c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039591.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039591.1"
/translation="MTGGPLDGRPVRPEDLSHSMLVAVLMANGGSLTIPVSAFEPDST
GGPDGSWHAVVLEPLGDGTVRLSVRPRPAETDEAGVRFL"
gene complement(15954..16295)
/locus_tag="SC_RS01970"
/old_locus_tag="SCP2.18c"
CDS complement(15954..16295)
/locus_tag="SC_RS01970"
/old_locus_tag="SCP2.18c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039592.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039592.1"
/translation="MPLHRAVGCDTTGCLALYLAAPQLGRDAAQFAAVRAGWSITAGG
LTSWCPCCARGGLPVLERGDCPVCTGSTFSREDAEVCHHCGHTTAHPADAYDDEDQEP
GEQLHAVEADR"
gene complement(16318..16860)
/locus_tag="SC_RS01975"
/old_locus_tag="SCP2.19c"
CDS complement(16318..16860)
/locus_tag="SC_RS01975"
/old_locus_tag="SCP2.19c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039593.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF6197 family protein"
/protein_id="WP_011039593.1"
/translation="MTAPSVAVQAPERADTRPAPPASLEDRLTAVSALMDDRLTVAAL
AVAVNAAVSVPDVGPVDLADVVRVPADVQPYRPPVDLYPTPVAAVLQRARARLERDGW
CQGATVDEDGARCLYGALHAEAASTGELHDALAVLLDAIRRHFPDEESVPAFNDGRHG
SRVVFRVLDQAADLAHTRNL"
gene complement(16943..18421)
/locus_tag="SC_RS01980"
/old_locus_tag="SCP2.20c"
CDS complement(16943..18421)
/locus_tag="SC_RS01980"
/old_locus_tag="SCP2.20c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039594.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="conjugal transfer protein TraA"
/protein_id="WP_430981107.1"
/translation="MELVDHRIEADRIVMRVEAPDTQLLALPRLPLARALGVEDPELL
MIETDGMAHGVVTLYREHPLLTVREATPDDLVMDRHGRIAIGMRHDGRPARWPLYDPE
LGALTDLLVGAPGSGKSVTLLTLIAAERTNGIVSVVADAQDGMSLPEAEGRVFHFGAG
QAEAAATLAAYSAVASYRQEVSAANGWGSFTLGKPWRLAILTMDEINRMLAMDSGLPA
PFRMWVAGMLGAGQITWRKVGMGVRIAGQSIHLADLADSEKIRANAKNGSVWLGRVNS
SMTRSMASDMTTGAVEITPVPKYFGVTGTAELDAAWSGDEAPTGPVTAGTAWLIQSGQ
PYLSRVWRAVKEARTYPSLIGLMESSPLVDFTPPEADVFRRAYDEALTIAVALLEGDE
DGGGAPAPAAPRRTEQAADAGSSRVPTPPATARTLQVLVLDALAAGQLRTREIRKAVG
AGTDGGPSSGSVDNALQALQDAGLVARVTHGVWARTDQADPS"
gene complement(18379..19254)
/locus_tag="SC_RS01985"
/old_locus_tag="SCP2.21c"
CDS complement(18379..19254)
/locus_tag="SC_RS01985"
/old_locus_tag="SCP2.21c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039595.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid transfer protein TraX"
/protein_id="WP_011039595.1"
/translation="MTAETVTPATAPAANVRPPLSPTAARHLATVERIAYGAAGLTAA
IGPSTDLWQLHAAALGTGAGALWRLWTRTRDREEGFGGRLLTSCYKAVPVLGLSTAYG
VALAVPGTAWWEVAASVAVATASAVAVPLTRSRGLRRAAENLPAVVAEQAPAEEPEQD
GYEGDVARHWAASPATGTTRLAHVRQYHPGRPDFEAVILAQPGEAVPGSLDRRAVAAV
YDVPEEAVRLAPVPGHGPGRIAVCVAPVELLARQQHQEPGDQLAALWDAKVSAPKASP
RAWSWSTTASRRTAS"
gene complement(19332..19745)
/locus_tag="SC_RS01990"
/old_locus_tag="SCP2.22c"
CDS complement(19332..19745)
/locus_tag="SC_RS01990"
/old_locus_tag="SCP2.22c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039596.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid transfer protein TraB"
/protein_id="WP_011039596.1"
/translation="MSDLVPRPANLPAATGKPSFTRLAARMATLTASALALKEGLWAL
KRRMETDADHADMLADLCVAAEVEPRFTGQINEAGTALRKVAEASAELARAADQVQHD
SQGLHDAHQGEYRGVYEAVNASGVRQAKPGFYRTR"
gene complement(19751..21571)
/locus_tag="SC_RS01995"
/old_locus_tag="SCP2.23c"
CDS complement(19751..21571)
/locus_tag="SC_RS01995"
/old_locus_tag="SCP2.23c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039597.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152345.1"
/translation="MGTLGLAAVLAVALAALRGTAGAITDWRQRRMEAAAEAAPLRAA
RLKLQEAQMKADAASTGGGGRVPSSNEYGRRSLARTGSGGGGSGGGSRGGGSSSGGRT
GPGRSLASSGGTGSRTGSPSGSVGTGPGRKGGGSSSGLSGSSTRSTGTGKESSGKRSS
SGSGSGGGGKAGGSGKDASGGSSSGRGSGSSDGSGSSGGRRPGVLGQLALDRSKRRTS
REAAAQKEAARQQKADLAERKRAGKDGGDRDTEGKATGKGGGKSAGTDRVTLGKALGD
EARSRAEERLRRRREDPDPPFLRRVPRDGAETAEGAAATSTEGDTAKTGKSGPETPAG
GATTSAPGSTAGTAPGGPGTATGGPTSTGPGAGSTTGPDGATGTGWEYWEPPGGGGRR
NPWDSLFEAEWDARVVWTVEQVDPPGAHAKRWEPDAIAPARAGLPAGAPSSTSSTTTA
APAATVTTTKETRVSAPLIPTPRTGGAASEHLTDVTLDDVLKSLEKSKTDCFATYDEC
ADLADKALQLRDQLHALADELAERHNVIGRLTSAAMHRLGESMDLLARRAEAMRTESL
HAAESVELAHDEMHDAYKPVQQATADAGLVMPSARIHNED"
gene complement(22012..22269)
/locus_tag="SC_RS02000"
/old_locus_tag="SCP2.24c"
CDS complement(22012..22269)
/locus_tag="SC_RS02000"
/old_locus_tag="SCP2.24c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039598.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039598.1"
/translation="MTQAVDPAQRRYQNRVTHLQARQSANLARGPKGIAAVWWDQARA
YATRAERDGDPEMWDYLARALENWCQQAEEREQQRKQGHAQ"
gene complement(22266..22772)
/locus_tag="SC_RS02005"
/old_locus_tag="SCP2.25c"
CDS complement(22266..22772)
/locus_tag="SC_RS02005"
/old_locus_tag="SCP2.25c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039599.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="alanine-rich protein"
/protein_id="WP_011039599.1"
/translation="MTEINRRPDADYSRLLDLSVLTTWTMDRQRVHHQDAAAYEEILA
LFQSALRSEVVDGDGRLSAPMRARKVEKHLRAAVKAARKQEVVMERFRLAVAAHQAHV
KALPAQREAKQTRKAGRRAVAAHTAKSLHKSAAAFAPAPAEGTPAVPSTAPAARGIND
LFNQRRGA"
gene complement(22953..23177)
/locus_tag="SC_RS02010"
CDS complement(22953..23177)
/locus_tag="SC_RS02010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010275250.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152346.1"
/translation="MARSRVKPRAPRRAPEENVPGQLGLVGSADPWQPTGCRCWPPDN
RGCGHCRTCSACQDCGACAGPGCACGCDDD"
gene complement(23177..24778)
/locus_tag="SC_RS02015"
/old_locus_tag="SCP2.27c"
CDS complement(23177..24778)
/locus_tag="SC_RS02015"
/old_locus_tag="SCP2.27c"
/function="putative membrane protein"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011005823.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF2637 domain-containing protein"
/protein_id="WP_011005823.1"
/translation="MTLTTLPLSKQRPGPTPSSPRPASDAPPTASATTAAASSPAAPA
PETTATAPGTGRRWSLPGGLTRAQSATAGAIVLAALALAGIGLYLSFEHVATFAHDRL
GFATLGKARLFTVGVDVGILVLIALDLLMAWLRRPIGWVRFPVWLLTGATIVLNAASA
APSAGAWTALDYVATFAHAIVPVLFIAIVEVGKTAVDRVVRPDAHNGPGVPLYRWFLA
PAPTFALWRRMKLWAVATYAEAVELDKELRVYRVMLEREYGSVRKAPSDVRLPLTMER
YGLTIAEALALPRQAEERAQALREAEEDARLAEEARKQERAAAAEIARLKAAGAVQAA
RTEVNASTSRAEVQAAAEVAAAERAATAETEAVQSEAAARAEADRAAAEHRAAEARRR
AAEADEAAAEARAREAEAALTAAEDEARTAAAEASTEEARARASQAQRDAAEAEQAAA
EARHRAAEAERRAVEAEDELTLSPRDRKVRKVARMILAEGAGHPENLPLESVMTACSV
SQTTASEYRSAAAQLLAEGYTPEAR"
gene complement(24875..25081)
/locus_tag="SC_RS02020"
/old_locus_tag="SCP2.28c"
CDS complement(24875..25081)
/locus_tag="SC_RS02020"
/old_locus_tag="SCP2.28c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039600.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152347.1"
/translation="MVTGRRPPRRLTVREAAAVLVLTVHATAWLAVSIVQPSVPTVLT
CLSAYGAALATLALVLTAGRDGRT"
gene complement(25075..25227)
/locus_tag="SC_RS02025"
CDS complement(25075..25227)
/locus_tag="SC_RS02025"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_319152348.1"
/translation="MTAVPDRPEQPQRTVPPQRRRIVVVPTPTPMPPLPRDPAARRRV
IRQRRW"
gene complement(25412..25702)
/locus_tag="SC_RS02030"
/old_locus_tag="SCP2.31c"
CDS complement(25412..25702)
/locus_tag="SC_RS02030"
/old_locus_tag="SCP2.31c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039602.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011039602.1"
/translation="MTDDVHAHPIDQPLYGRTADAIRDQLREHPDPGGTLSRMTLRVS
TDGGRSYGSAVTEAVDHDTAWENAGPLGLGPGPWPPCQCPRHRGAGLPGPRG"
gene complement(25774..26253)
/locus_tag="SC_RS02035"
/old_locus_tag="SCP2.32c"
CDS complement(25774..26253)
/locus_tag="SC_RS02035"
/old_locus_tag="SCP2.32c"
/function="unknown"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011005822.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011005822.1"
/translation="MIRSVTTRARRAFRTVADAVRSTVAPASLVRSRADETAPDPTGL
LAPEEIEARAEEIEDAAADYAAATDRARSGDRGKRKARKLLDRLPAGRYGVWTVERVP
SSRQTPDLEAIRATYKRLGLGDVPMRTCAPSLRVTRAAADVVPFPAADEAATAQLAA"
gene 26665..27462
/locus_tag="SC_RS02040"
/old_locus_tag="SCP2.35"
CDS 26665..27462
/locus_tag="SC_RS02040"
/old_locus_tag="SCP2.35"
/function="putative transcriptional regulator"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011005821.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0003700 - DNA-binding transcription
factor activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="GntR family transcriptional regulator"
/protein_id="WP_011005821.1"
/translation="MATRRKGRPGGYEEIAAHFRRLMDSGELSPGDPLPSMRDVCDQF
GSAITTVNRAFRLLQEEGRTVSKPGVGTIVRDMSRVRVPFSTYGDVLAPGGDKGPWER
ATAAQGLDGRMLVEAPEEVGAPADVAARLGIEPGALVVHRRRRATIGEDVVQLQDAWY
PLEIARAAGLDRPGKVVGGVLGAMTGAGLSPTSTDHDVEVWVPSAQQAAELSLGSRVS
VLVVERVTYDATVRVLELTRHTGAADRLTLTYKGLPLRATGAEGSTS"
gene 27459..27794
/locus_tag="SC_RS02045"
/old_locus_tag="SCP2.36"
CDS 27459..27794
/locus_tag="SC_RS02045"
/old_locus_tag="SCP2.36"
/function="unknown"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011005820.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011005820.1"
/translation="MTNELDTASAAAQETLERSAAELVRLQVVRELRATHGLVYRALD
GMEPPYLVAWEGRFVGEVHRHGPAYLHSWYVLPYGDDEEPTAEAPDFNGRPFGTARAA
AASLKPGQA"
gene 27897..28481
/locus_tag="SC_RS02050"
/old_locus_tag="SCP2.37"
CDS 27897..28481
/locus_tag="SC_RS02050"
/old_locus_tag="SCP2.37"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039603.1"
/GO_function="GO:0004518 - nuclease activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="GIY-YIG nuclease family protein"
/protein_id="WP_011039603.1"
/translation="MTQSRKPSEVVYLLGAEGLDLVKIGTTTDVERRVRTMQTGLPLT
LSVLWTCEGGRALEGALHQEFREHNRRGEWFDLTSLGDPVAVVSETVRRLAPGLGLPI
PPPRVSPDLALTPVAPTIPGCVRLERTLTARMLAWFECEDFGLPPSASKPVMLYRTVQ
YDAKGDVLAVTQTLVGDGHEQPEGFELPPVQGGN"
gene complement(28549..28968)
/locus_tag="SC_RS02055"
/old_locus_tag="SCP2.38c"
CDS complement(28549..28968)
/locus_tag="SC_RS02055"
/old_locus_tag="SCP2.38c"
/function="unknown"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039604.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="WP_011005819.1"
/translation="MTTMPVEGFNPERDLTAPSLYSLNLSAAQHCTLAWVEDHGGLFD
VIPVPVETVAEDCGNSVSTVHEALARLEALNLLVRTSAGLYRINARYYFTLHPELREM
ITAALTDPPVTPDDRARAPRKVSNTDARRRRTIRPVS"
gene complement(28965..29477)
/locus_tag="SC_RS02060"
/old_locus_tag="SCP2.39c"
CDS complement(28965..29477)
/locus_tag="SC_RS02060"
/old_locus_tag="SCP2.39c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011039605.1"
/GO_function="GO:0003700 - DNA-binding transcription
factor activity [Evidence IEA]"
/GO_process="GO:0006355 - regulation of DNA-templated
transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="WP_319152350.1"
/translation="MPTRKRGPNMALVNMDTGEAVSARPRTPHQFDGKGYTLQAVGSD
VPLYSLGLAAAEWATLEWLREHGGAAGYVPVTPEELGEDVGASKDTCRKALNRLVKLG
LVVKPGPRSGSYQLNPLRYWEGAGSTQVNACRRMAPPRVAPDDKAMTRSASKPKTIPA
TRRRAAGETR"
CONTIG join(AL645771.1:1..31317)
//
