GenomeNet

Database: RefSeq
Entry: NC_004851
LinkDB: NC_004851
Original site: NC_004851 
LOCUS       NC_004851             221618 bp    DNA     circular CON 03-AUG-2016
DEFINITION  Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence.
ACCESSION   NC_004851
VERSION     NC_004851.1
DBLINK      BioProject: PRJNA62907
            Assembly: GCF_000006925.2
KEYWORDS    RefSeq.
SOURCE      Shigella flexneri 2a str. 301
  ORGANISM  Shigella flexneri 2a str. 301
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 221618)
  AUTHORS   Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H.,
            Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D.,
            Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K.,
            Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y.,
            Hou,Y. and Yu,J.
  TITLE     Genome sequence of Shigella flexneri 2a: insights into
            pathogenicity through comparison with genomes of Escherichia coli
            K12 and O157
  JOURNAL   Nucleic Acids Res. 30 (20), 4432-4441 (2002)
   PUBMED   12384590
REFERENCE   2  (bases 1 to 221618)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2003) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 221618)
  AUTHORS   Jin,Q., Zhang,J.Y., Liu,H., Yang,J., Yang,F., Zhang,X.B.,
            Wang,J.H., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y.,
            Zhao,A.L., Gao,Y.S., Zhu,J.P., Kan,B., Chen,S.X., Yao,Z.J.,
            He,B.K., Chen,R.S., Ma,D.L., Yuan,Z.H., Xu,J.G., Wang,Y., Shen,Y.,
            Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-MAY-2001) State Key Laboratory for Moleclular
            Virology and Genetic Engineering, Microbial Genome Center of
            Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
            Beijing 100176, P.R.China
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AF386526.
            RefSeq Category: Reference Genome
                        CLI: Clinical Isolate
                        FGS: First Genome sequenced
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..221618
                     /organism="Shigella flexneri 2a str. 301"
                     /mol_type="genomic DNA"
                     /strain="301"
                     /serotype="2a"
                     /db_xref="taxon:198214"
                     /plasmid="pCP301"
     mobile_element  184..564
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS2"
     gene            complement(191..493)
                     /locus_tag="CP0001"
                     /db_xref="GeneID:1238176"
     CDS             complement(191..493)
                     /locus_tag="CP0001"
                     /codon_start=1
                     /transl_table=11
                     /product="IS2 ORF2"
                     /protein_id="NP_858134.1"
                     /db_xref="GeneID:1238176"
                     /translation="MVHATELMKHASSPGCWDFVEPKNTAVRSPESNRIAKSFVKTIK
                     CDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALDYRSPREYLRQRANDNRCLEI"
     misc_feature    complement(194..>436)
                     /locus_tag="CP0001"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     gene            485..949
                     /locus_tag="CP0002"
                     /db_xref="GeneID:1238177"
     CDS             485..949
                     /locus_tag="CP0002"
                     /codon_start=1
                     /transl_table=11
                     /product="resolvase"
                     /protein_id="NP_858135.1"
                     /db_xref="GeneID:1238177"
                     /translation="MNHYPSVTSLETPEARCRSGVPPLPACRQRESIYGLIELFIQIV
                     HRLSVRSERRLVKTLLADFQRVHGKTALLFRIAEAALNNPDGLVKEVVYHLHIVEPDR
                     SGKRSSSYLAQLRDVSARGDAVKNGRTLPEQDSGLPALVSDPGLPRMISTVL"
     misc_feature    <590..>742
                     /locus_tag="CP0002"
                     /note="Tn3 family transposase; Region: transpos_Tn3;
                     NF033527"
                     /db_xref="CDD:411163"
     gene            1176..2042
                     /gene="ospB"
                     /locus_tag="CP0003"
                     /db_xref="GeneID:1238026"
     CDS             1176..2042
                     /gene="ospB"
                     /locus_tag="CP0003"
                     /codon_start=1
                     /transl_table=11
                     /product="OspB protein"
                     /protein_id="NP_858136.1"
                     /db_xref="GeneID:1238026"
                     /translation="MNLDGVRPYCRIVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
                     VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
                     IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
                     VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
                     LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
                     QKKTFIINKELD"
     gene            2371..3111
                     /gene="phoN2/apy"
                     /locus_tag="CP0004"
                     /db_xref="GeneID:1238061"
     CDS             2371..3111
                     /gene="phoN2/apy"
                     /locus_tag="CP0004"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoN2 (Apy), periplasmic phosphatase, apyrase,
                     ATP diphosphohydrolase"
                     /protein_id="NP_858137.1"
                     /db_xref="GeneID:1238061"
                     /translation="MKTKNFLLFCIATNMIFIPSANALKAEGFLTQQTSPDSLSILPP
                     PPAENSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
                     ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDEKMAITGSYPSGHA
                     SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
                     NTPEFTKSLSEAKKEFEELNTPTNELTP"
     misc_feature    2386..3075
                     /gene="phoN2/apy"
                     /locus_tag="CP0004"
                     /note="PAP2, bacterial acid phosphatase or class A
                     non-specific acid phosphatases. These enzymes catalyze
                     phosphomonoester hydrolysis, with optimal activity in low
                     pH conditions. They are secreted into the periplasmic
                     space, and their physiological role remains...; Region:
                     PAP2_acid_phosphatase; cd03397"
                     /db_xref="CDD:239491"
     misc_feature    order(2740..2742,2761..2763,2839..2847,2944..2946,
                     2962..2964,2974..2976)
                     /gene="phoN2/apy"
                     /locus_tag="CP0004"
                     /note="active site"
                     /db_xref="CDD:239491"
     mobile_element  3218..3347
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS629"
     gene            complement(3471..4745)
                     /gene="ospC4"
                     /locus_tag="CP0005"
                     /db_xref="GeneID:1238015"
     CDS             complement(3471..4745)
                     /gene="ospC4"
                     /locus_tag="CP0005"
                     /note="probably secreted by the Mxi-Spa secretion
                     machinery; function unknown"
                     /codon_start=1
                     /transl_table=11
                     /product="OspC4"
                     /protein_id="NP_858138.1"
                     /db_xref="GeneID:1238015"
                     /translation="MKNFLRKSIAAQSYSKMFSQGTSFKSLNLSLEAPSGARSSFRSL
                     EHLDKVSRHYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNIILNIKSFD
                     KIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSK
                     FNFTKQDVAEMEKMKNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKAN
                     SGDTMLDNAMKSKDSKMIDFFIKKWSGIRQTI"
     misc_feature    complement(3501..4349)
                     /gene="ospC4"
                     /locus_tag="CP0005"
                     /note="Shigella flexneri OspC protein; Region:
                     Shigella_OspC; pfam06128"
                     /db_xref="CDD:283728"
     gene            complement(5264..5665)
                     /locus_tag="CP0006"
                     /db_xref="GeneID:1238237"
     CDS             complement(5264..5665)
                     /locus_tag="CP0006"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858139.2"
                     /db_xref="GeneID:1238237"
                     /translation="MAETLGEQYDPVLPSSLRQSSARKPLPASLPRAPRVIRPEEECC
                     PACGGELSPLGCDVSEQLELISSAFKVIEKQRPKLACRRCDHIVQAPVPSKPIARSYA
                     GAGLLAHVVTGKYADHLPLYRQSDLLFHTAI"
     misc_feature    complement(<5267..5614)
                     /locus_tag="CP0006"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3436"
                     /db_xref="CDD:225970"
     gene            complement(5745..6095)
                     /locus_tag="CP0007"
                     /db_xref="GeneID:1238178"
     CDS             complement(5745..6095)
                     /locus_tag="CP0007"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858140.1"
                     /db_xref="GeneID:1238178"
                     /translation="MVVSAIASTPHLVYIRTRETYGTRRLQTELADNGIIVGRDRLAG
                     LRKELRLHCKQKRKFRATTNSDHNLPVTPNLLNQNFTPTAPNQVWVADSVVQAFRNQP
                     TEGAGRETAAYAVR"
     misc_feature    complement(<5820..>6059)
                     /locus_tag="CP0007"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     mobile_element  5827..6055
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     mobile_element  6064..7327
                     /mobile_element_type="insertion sequence:IS600"
     gene            complement(6107..6925)
                     /locus_tag="CP0008"
                     /db_xref="GeneID:1238100"
     CDS             complement(6107..6925)
                     /locus_tag="CP0008"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858141.1"
                     /db_xref="GeneID:1238100"
                     /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET
                     YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ
                     TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
                     ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL
                     KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA"
     misc_feature    complement(6125..6913)
                     /locus_tag="CP0008"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     gene            complement(7435..9144)
                     /gene="ospD2"
                     /locus_tag="CP0009"
                     /db_xref="GeneID:1238013"
     CDS             complement(7435..9144)
                     /gene="ospD2"
                     /locus_tag="CP0009"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858142.2"
                     /db_xref="GeneID:1238013"
                     /translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
                     IQFKNKTAPYFSEKRNVEVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
                     STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
                     LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
                     YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
                     YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGYSDIIQVYGKILNMCNLSQETILTL
                     LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
                     ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
                     LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
                     TNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
                     HFL"
     misc_feature    complement(8260..9078)
                     /gene="ospD2"
                     /locus_tag="CP0009"
                     /note="ShET2 enterotoxin, N-terminal region; Region:
                     Toxin_15; pfam07906"
                     /db_xref="CDD:369588"
     gene            complement(9576..10295)
                     /gene="ospF"
                     /locus_tag="CP0010"
                     /db_xref="GeneID:1238011"
     CDS             complement(9576..10295)
                     /gene="ospF"
                     /locus_tag="CP0010"
                     /note="secreted by the Mxi-Spa secretion machinery"
                     /codon_start=1
                     /transl_table=11
                     /product="OspF"
                     /protein_id="NP_858143.1"
                     /db_xref="GeneID:1238011"
                     /translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
                     QYPAYYFKVASNVPTYSDICQSFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
                     FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
                     QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
                     DGSERQEQMLREEPFYRLMIE"
     misc_feature    complement(9579..10295)
                     /gene="ospF"
                     /locus_tag="CP0010"
                     /note="type III secretion system effector phosphothreonine
                     lyase; Region: PRK15245"
                     /db_xref="CDD:185157"
     gene            complement(10420..10794)
                     /locus_tag="CP0011"
                     /db_xref="GeneID:1238179"
     CDS             complement(10420..10794)
                     /locus_tag="CP0011"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858144.1"
                     /db_xref="GeneID:1238179"
                     /translation="MDDRIQAGKADMAACADEADEPVLGAERTGKGYLEQTMERGKTQ
                     RLAEMAAANSDVPMMKNVAKTIGKRLYGILNAMRHGVSNGNAEALNSKIRLLRIKAKG
                     YRNRERFKLGVMFHYGKLNMAF"
     misc_feature    complement(10447..>10644)
                     /locus_tag="CP0011"
                     /note="ISL3 family transposase; Region: transpos_ISL3;
                     NF033550"
                     /db_xref="CDD:411183"
     gene            complement(10620..10997)
                     /locus_tag="CP0012"
                     /db_xref="GeneID:3170835"
     CDS             complement(10620..10997)
                     /locus_tag="CP0012"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858145.2"
                     /db_xref="GeneID:3170835"
                     /translation="MLNWLSKLRAARIHLPNAVEKIAFDRFHVAKQPGEVVDKTRQNE
                     HPHLPVESRRQAKGTRFLWQHSDKWMTESRQEKLIWLRAQMKLTSLCWALKELAKDIW
                     SRPWSEERRNDWQRWLRPTVTSP"
     misc_feature    complement(<10641..>10970)
                     /locus_tag="CP0012"
                     /note="Transposase; Region: DDE_Tnp_ISL3; cl24015"
                     /db_xref="CDD:329236"
     gene            11015..11218
                     /locus_tag="CP0013"
                     /db_xref="GeneID:1238180"
     CDS             11015..11218
                     /locus_tag="CP0013"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 ORF"
                     /protein_id="NP_858146.1"
                     /db_xref="GeneID:1238180"
                     /translation="MPEPVYRTLLSSTSHVISKKCTQRIERHNLNLRTHLKRLTRKTI
                     CFSKSDDMHYKIIGWYLTINHHH"
     misc_feature    <11024..11215
                     /locus_tag="CP0013"
                     /note="IS1 transposase; Region: DDE_Tnp_IS1; cl00721"
                     /db_xref="CDD:294470"
     gene            complement(11327..11905)
                     /locus_tag="CP0014"
                     /db_xref="GeneID:1238139"
     CDS             complement(11327..11905)
                     /locus_tag="CP0014"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858147.1"
                     /db_xref="GeneID:1238139"
                     /translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVKKAVLSGKINELNAC
                     HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
                     VSFVNREGKICHTAYVKSSDNSMTYYHANGSSIDKYITDMCGLICMRHIESTGIIFYM
                     LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
     mobile_element  complement(12299..12446)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS21"
     mobile_element  complement(12445..12562)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS21"
     mobile_element  complement(12698..13161)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS91"
     gene            complement(12871..13227)
                     /locus_tag="CP0015"
                     /db_xref="GeneID:1238081"
     CDS             complement(12871..13227)
                     /locus_tag="CP0015"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 orf"
                     /protein_id="NP_858148.1"
                     /db_xref="GeneID:1238081"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPVQMSRLEHYAGQDEIGLRYNS
                     HRTKREENLVMSGDEFMERFSWHVADKGFRMVIRGPESGEAAITGRCGVRHNGDSEKN
                     GEANHKERDVSAVTEG"
     misc_feature    complement(13000..>13173)
                     /locus_tag="CP0015"
                     /note="IS91 family transposase; Region: transpos_IS91;
                     NF033538"
                     /db_xref="CDD:411173"
     mobile_element  complement(13158..13490)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS91"
     gene            complement(13227..13412)
                     /locus_tag="CP0016"
                     /db_xref="GeneID:3170823"
     CDS             complement(13227..13412)
                     /locus_tag="CP0016"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 ORF2"
                     /protein_id="NP_858149.2"
                     /db_xref="GeneID:3170823"
                     /translation="MDAGNKKLVFWFVRVDDEGYPEIARCMEREFATIPAGINADGMY
                     CPECGTVHWPDGVIPPF"
     mobile_element  complement(13857..15284)
                     /mobile_element_type="insertion sequence:IS4"
     gene            complement(13870..15213)
                     /locus_tag="CP0017"
                     /db_xref="GeneID:1238092"
     CDS             complement(13870..15213)
                     /locus_tag="CP0017"
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 orf"
                     /protein_id="NP_858150.1"
                     /db_xref="GeneID:1238092"
                     /translation="MPDSFMHIGQALDLGSRYDSLRNPLTSLGDYLDPELISRCLAES
                     GTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQ
                     RLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHA
                     GNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIGQTGDNTLTLMDKGYY
                     SLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNE
                     VTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRL
                     TLRSKKPELVKQELWGVLLAYNLVRYQMIKMAEHLKGYCPNQLSFSESCGMVMRMLMT
                     LQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA"
     misc_feature    complement(14875..15150)
                     /locus_tag="CP0017"
                     /note="Insertion element 4 transposase N-terminal; Region:
                     Nterm_IS4; pfam13006"
                     /db_xref="CDD:289754"
     misc_feature    complement(14026..14985)
                     /locus_tag="CP0017"
                     /note="IS4 transposase [Mobilome: prophages, transposons];
                     Region: InsG; COG3385"
                     /db_xref="CDD:225920"
     misc_feature    complement(14146..14829)
                     /locus_tag="CP0017"
                     /note="Transposase DDE domain; Region: DDE_Tnp_1;
                     pfam01609"
                     /db_xref="CDD:279886"
     gene            15326..15661
                     /locus_tag="CP0018"
                     /db_xref="GeneID:1238181"
     CDS             15326..15661
                     /locus_tag="CP0018"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858151.1"
                     /db_xref="GeneID:1238181"
                     /translation="MEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNM
                     PALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQIL
                     IREIKGSSH"
     misc_feature    <15329..15493
                     /locus_tag="CP0018"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:304362"
     misc_feature    15329..>15472
                     /locus_tag="CP0018"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            15661..16008
                     /locus_tag="CP0019"
                     /db_xref="GeneID:1238080"
     CDS             15661..16008
                     /locus_tag="CP0019"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF2"
                     /protein_id="NP_858152.1"
                     /db_xref="GeneID:1238080"
                     /translation="MISFPAGSRIWLVAGITDMRNGFNGLVSKVQNVLKDDPFSGHLF
                     IFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
                     KHPKRTERAGIRI"
     misc_feature    15688..15957
                     /locus_tag="CP0019"
                     /note="IS66 family insertion sequence element accessory
                     protein TnpB; Region: IS66_TnpB; NF033819"
                     /db_xref="CDD:411392"
     gene            16028..17335
                     /locus_tag="CP0020"
                     /db_xref="GeneID:1238078"
     CDS             16028..17335
                     /locus_tag="CP0020"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF3"
                     /protein_id="NP_858153.1"
                     /db_xref="GeneID:1238078"
                     /translation="MDTSLAHENARLRALLQTQQDTIRQMAKYNRLLSQRVAAYASEI
                     NRLKALVAKLQRMQFGKSSEKLRAKTERQILEAQERISALQEEMAETLGEQYDPVLPS
                     PLRQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIE
                     TQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVAGKYADYLPLYRQSEIYRRQ
                     GVELSRATLGRWTGAVAELLEPLYDILRQYVLMPGKVHADDIPVPVQEPGSGKTRTAR
                     LWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESG
                     RITEAACMAHVRRKIHDVHARVPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKA
                     RAAPLMQSLYDWIQQQMKIHSLKMECLHGEHYYPSGNSAGNSV"
     misc_feature    16163..16393
                     /locus_tag="CP0020"
                     /note="Transposase C of IS166 homeodomain; Region:
                     LZ_Tnp_IS66; pfam13007"
                     /db_xref="CDD:315644"
     misc_feature    16340..16813
                     /locus_tag="CP0020"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3436"
                     /db_xref="CDD:225970"
     misc_feature    16583..>17272
                     /locus_tag="CP0020"
                     /note="Transposase IS66 family; Region: DDE_Tnp_IS66;
                     pfam03050"
                     /db_xref="CDD:281099"
     mobile_element  17259..17456
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS3"
     gene            18104..18310
                     /locus_tag="CP0021"
                     /db_xref="GeneID:1238182"
     CDS             18104..18310
                     /locus_tag="CP0021"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="NP_858154.1"
                     /db_xref="GeneID:1238182"
                     /translation="MDAENETVLNANMTHHLGCEKNQLRSGSNSRNGCLTKIITTGDE
                     PLEIRTLRDRNGTFEPQQLKKNQP"
     misc_feature    18116..>18283
                     /locus_tag="CP0021"
                     /note="Transposase (or an inactivated derivative)
                     [Mobilome: prophages, transposons]; Region: IS285;
                     COG3328"
                     /db_xref="CDD:225865"
     mobile_element  18392..18534
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS630"
     gene            18898..19575
                     /gene="ospD1"
                     /locus_tag="CP0022"
                     /db_xref="GeneID:1238014"
     CDS             18898..19575
                     /gene="ospD1"
                     /locus_tag="CP0022"
                     /codon_start=1
                     /transl_table=11
                     /product="protein OspD1"
                     /protein_id="NP_858155.1"
                     /db_xref="GeneID:1238014"
                     /translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKNNIINVTNTAIS
                     HAINEEKSGGGYSGVSFRKLAKIQNISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
                     SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
                     LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
                     DKIQELF"
     gene            20087..20401
                     /locus_tag="CP0023"
                     /db_xref="GeneID:1238127"
     CDS             20087..20401
                     /locus_tag="CP0023"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858156.1"
                     /db_xref="GeneID:1238127"
                     /translation="MLQRQRGKVGFAQLPVDFVAIEPDSVQGVGKRANLTNRCFIIRI
                     NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
                     RP"
     gene            20683..21249
                     /gene="ipgB2"
                     /locus_tag="CP0024"
                     /db_xref="GeneID:1238044"
     CDS             20683..21249
                     /gene="ipgB2"
                     /locus_tag="CP0024"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858157.2"
                     /db_xref="GeneID:1238044"
                     /translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
                     TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
                     EKDYRISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
                     FEKNVQYIDLKKLRGNMSDYITNLESPF"
     misc_feature    20773..21204
                     /gene="ipgB2"
                     /locus_tag="CP0024"
                     /note="IpaB/EvcA family; Region: IpaB_EvcA; pfam03278"
                     /db_xref="CDD:281295"
     gene            21746..22330
                     /locus_tag="CP0025"
                     /db_xref="GeneID:1238075"
     CDS             21746..22330
                     /locus_tag="CP0025"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 ORF2"
                     /protein_id="NP_858158.1"
                     /db_xref="GeneID:1238075"
                     /translation="MSKLILPSNTVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITY
                     LRTDEGWLYLAVVIDLWSRAVIGWSMSPRLTAQLACDALQMALWRRKRPRNVIVHSDR
                     GSQYCSADYQALLKWHNLRGSMSAKGCCYDNACVESFFHSLKVECLHGEHFISREIMR
                     ATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA"
     misc_feature    <21812..22327
                     /locus_tag="CP0025"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     mobile_element  21774..22360
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS3"
     mobile_element  22659..23014
                     /note="partial"
                     /mobile_element_type="insertion sequence:iso-IS1"
     mobile_element  23035..23794
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS100"
     gene            23117..23899
                     /locus_tag="CP0026"
                     /db_xref="GeneID:1238072"
     CDS             23117..23899
                     /locus_tag="CP0026"
                     /codon_start=1
                     /transl_table=11
                     /product="IS100 ORF1"
                     /protein_id="NP_858159.1"
                     /db_xref="GeneID:1238072"
                     /translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
                     YDTLETCHRNAFRFFGGVSREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
                     PRLCRPFRLRDPHKITANKPAPYFGRFWTDGLELCSVLFVLK"
     misc_feature    23117..23803
                     /locus_tag="CP0026"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG4584"
                     /db_xref="CDD:226950"
     mobile_element  23794..25095
                     /mobile_element_type="insertion sequence:ISSfl3"
     gene            complement(23820..25043)
                     /locus_tag="CP0028"
                     /db_xref="GeneID:1238183"
     CDS             complement(23820..25043)
                     /locus_tag="CP0028"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl3 ORF"
                     /protein_id="NP_858161.2"
                     /db_xref="GeneID:1238183"
                     /translation="MCQQFNEITAMPVHKVCQNFFRDALAPFHQYRQNALMDATMALI
                     NGASLTQTSIGRFLPGNAQVKNKIKRIDRLMGNEALHRDIPMIFRNITSMLTRQLSLC
                     VIAVDWSGYPSQEHHVLRASLLCDGRSIPLLSKVVPSEKQNNPLIQHDFLDSLAQSLP
                     PDARVIIVTDAGFQSAWFHHITSLGWDFIGRIRNNVQYCLDNAPERWLKVSDSPECKT
                     PEYMGAGRLVKERKKSIRGHFYTYKKSAKGRKKKRSKGQSGLNKTDKEQSKSAKEAWL
                     IFSSTNDFRAREIIKLYSRRMQIEQNFRDEKNGRFGFGLRASKSRSTGRILVLSLLAT
                     LSTIVMWLLGYHAENKGLHLKYQANSIKSRRVISYLTLAKNVLRHSPLILRRTVLSTV
                     LNHLSRTYRNMVLVY"
     misc_feature    complement(24036..24740)
                     /locus_tag="CP0028"
                     /note="Transposase DDE domain; Region: DDE_Tnp_1;
                     pfam01609"
                     /db_xref="CDD:307645"
     gene            25018..25449
                     /locus_tag="CP0027"
                     /db_xref="GeneID:1238184"
     CDS             25018..25449
                     /locus_tag="CP0027"
                     /codon_start=1
                     /transl_table=11
                     /product="IS100 ORF1"
                     /protein_id="NP_858160.2"
                     /db_xref="GeneID:1238184"
                     /translation="MISLNCWHKSVDHIMLCLSRFLGIPQPFRAQTKGKVERMVQYTR
                     NSFYIPLMTRLRPMGSTVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSM
                     LALPPEKKEYDVHPGENLVSFDNPPQHHPLSIYDSFCRGVA"
     misc_feature    <25057..25299
                     /locus_tag="CP0027"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG4584"
                     /db_xref="CDD:226950"
     mobile_element  25096..26295
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS100"
     gene            25446..26228
                     /locus_tag="CP0029"
                     /db_xref="GeneID:1238077"
     CDS             25446..26228
                     /locus_tag="CP0029"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase/IS protein"
                     /protein_id="NP_858162.1"
                     /db_xref="GeneID:1238077"
                     /translation="MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFL
                     EHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIER
                     NENIVLLGPSGVGKTHLAIAMGYEAVRVGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ
                     RGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGD
                     AALTSAMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
     misc_feature    25449..26225
                     /locus_tag="CP0029"
                     /note="transposase/IS protein; Provisional; Region:
                     PRK09183"
                     /db_xref="CDD:181681"
     misc_feature    25773..25796
                     /locus_tag="CP0029"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(25776..25799,25959..25961)
                     /locus_tag="CP0029"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    25947..25964
                     /locus_tag="CP0029"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     gene            26244..26633
                     /locus_tag="CP0030"
                     /db_xref="GeneID:1238151"
     CDS             26244..26633
                     /locus_tag="CP0030"
                     /codon_start=1
                     /transl_table=11
                     /product="iso-IS1 ORF2"
                     /protein_id="NP_858163.1"
                     /db_xref="GeneID:1238151"
                     /translation="MGRWWRYKWITFHPSLTQHWLWYAYNTKTGGVLAYTFGPRNDET
                     CRELLALLTPFCIGMVTSDDWGSYAREVPKEKHLTGKIFTQRIARNNRTLRTRIKRLA
                     RKTICFSRSVEIHEKVIGSFIEKHMFY"
     misc_feature    26244..>26297
                     /locus_tag="CP0030"
                     /note="Beta-ketoacyl synthase; Region: PKS_KS; cl28295"
                     /db_xref="CDD:333115"
     misc_feature    26295..26630
                     /locus_tag="CP0030"
                     /note="IS1 transposase; Region: DDE_Tnp_IS1; cl00721"
                     /db_xref="CDD:294470"
     mobile_element  26295..26642
                     /note="partial"
                     /mobile_element_type="insertion sequence:iso-IS1"
     gene            26955..28154
                     /gene="parA"
                     /locus_tag="CP0031"
                     /db_xref="GeneID:1238009"
     CDS             26955..28154
                     /gene="parA"
                     /locus_tag="CP0031"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid segregation protein"
                     /protein_id="NP_858164.1"
                     /db_xref="GeneID:1238009"
                     /translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
                     AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
                     DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
                     LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
                     LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
                     AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
                     GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
                     EFIRANY"
     misc_feature    26994..27269
                     /gene="parA"
                     /locus_tag="CP0031"
                     /note="ParA helix turn helix domain; Region: HTH_54;
                     pfam18607"
                     /db_xref="CDD:408389"
     misc_feature    27411..28142
                     /gene="parA"
                     /locus_tag="CP0031"
                     /note="Cellulose biosynthesis protein BcsQ [Cell
                     motility]; Region: BcsQ; COG1192"
                     /db_xref="CDD:224113"
     gene            28154..29134
                     /gene="parB"
                     /locus_tag="CP0032"
                     /db_xref="GeneID:1238008"
     CDS             28154..29134
                     /gene="parB"
                     /locus_tag="CP0032"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid segregation protein"
                     /protein_id="NP_858165.1"
                     /db_xref="GeneID:1238008"
                     /translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
                     IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
                     DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
                     GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
                     GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
                     LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
     misc_feature    28319..28789
                     /gene="parB"
                     /locus_tag="CP0032"
                     /note="ParB/RepB/Spo0J family partition protein; Region:
                     parB_part; TIGR00180"
                     /db_xref="CDD:272946"
     misc_feature    28736..29113
                     /gene="parB"
                     /locus_tag="CP0032"
                     /note="ParB family; Region: ParB; pfam08775"
                     /db_xref="CDD:400911"
     gene            complement(29339..29521)
                     /locus_tag="CP0034"
                     /db_xref="GeneID:1238239"
     CDS             complement(29339..29521)
                     /locus_tag="CP0034"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858167.2"
                     /db_xref="GeneID:1238239"
                     /translation="MHQPVKQLIARKFGLSCGFAMSIDTEKIKVRFSQINAGDFLFRH
                     GIPLTFVVKVYPSWRN"
     gene            29516..29875
                     /locus_tag="CP0033"
                     /db_xref="GeneID:1238185"
     CDS             29516..29875
                     /locus_tag="CP0033"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="NP_858166.2"
                     /db_xref="GeneID:1238185"
                     /translation="MQQPKMTVAMEAGGASHYWAREIRKLDHDVILLPAQHVKAYQRC
                     QKNDYNDAQAIAEACQHGTIRPVPIKTLEQQDVQTFLNMRRLVSMERTQLINHIRGLL
                     AEYGIVFSKGAAELRQK"
     misc_feature    29525..>29839
                     /locus_tag="CP0033"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3547"
                     /db_xref="CDD:226077"
     gene            complement(30161..31381)
                     /locus_tag="CP0035"
                     /pseudo
                     /db_xref="GeneID:3170824"
     misc_feature    complement(30161..31381)
                     /locus_tag="CP0035"
                     /note="Similar to Shigella flexneri putative reverse
                     transcriptase ref: NP_085197.1 (405 aa). BLAST with
                     identity of 97% in 405 aa. This CDS contains an in-frame
                     stop codon. The sequence has been checked and is believed
                     to be correct."
                     /pseudo
     gene            31156..31551
                     /locus_tag="CP0037"
                     /db_xref="GeneID:1238240"
     CDS             31156..31551
                     /locus_tag="CP0037"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858170.1"
                     /db_xref="GeneID:1238240"
                     /translation="MGSPECVPCHSTSGSVFPALVAETMFPNIAGSRSCIDCHHVAGR
                     TFSKSARRIRGAPLLRRTSRYDAQTSAFGISNDFRCISYVIPFWVVSSAMNVIPIPSL
                     QTHYRSFITTTNGSAPVSRYVPETGSHVP"
     gene            31392..31811
                     /locus_tag="CP0038"
                     /db_xref="GeneID:1238241"
     CDS             31392..31811
                     /locus_tag="CP0038"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858171.1"
                     /db_xref="GeneID:1238241"
                     /translation="MHQLRHPLLGCVFCNECDPHPFAPDPLQIFHHYYEWVRPCFPIR
                     AGNRFSRSLRWSGPGSCCLHTGCRAVSKQVSSALIRGRLYGPILASSKISMLHRTVYF
                     RSASRTHVTVDLCLFPESLTTSFLRMKQHRVVWSVLL"
     mobile_element  complement(32042..33347)
                     /mobile_element_type="insertion sequence:IS629"
     gene            complement(32084..32752)
                     /locus_tag="CP0039"
                     /db_xref="GeneID:1238065"
     CDS             complement(32084..32752)
                     /locus_tag="CP0039"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858172.1"
                     /db_xref="GeneID:1238065"
                     /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
                     RVNHQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
                     GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGND
                     DLAA"
     misc_feature    complement(32087..32752)
                     /locus_tag="CP0039"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     gene            complement(32967..33293)
                     /locus_tag="CP0040"
                     /db_xref="GeneID:1238096"
     CDS             complement(32967..33293)
                     /locus_tag="CP0040"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858173.1"
                     /db_xref="GeneID:1238096"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
                     DRLWKK"
     misc_feature    complement(33030..33293)
                     /locus_tag="CP0040"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:304362"
     misc_feature    complement(32970..33290)
                     /locus_tag="CP0040"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            complement(33299..33706)
                     /locus_tag="CP0041"
                     /db_xref="GeneID:1238188"
     CDS             complement(33299..33706)
                     /locus_tag="CP0041"
                     /codon_start=1
                     /transl_table=11
                     /product="IS150 ORF B"
                     /protein_id="NP_858174.1"
                     /db_xref="GeneID:1238188"
                     /translation="MRQQQDEQGRFSICSRQAAVVQRLMGILSLKAAIKVKRYRSYRG
                     EVGQTAPYVLQRDFKATRPNEKWVTDFTEFAVNGRKLYLSPVIDLFNNEVISYSLSER
                     PVMNMVENMLDQAFKKLNEPPRESWRLNFLRKR"
     misc_feature    complement(<33341..>33646)
                     /locus_tag="CP0041"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     mobile_element  complement(33347..33646)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS150"
     mobile_element  33643..35331
                     /mobile_element_type="insertion sequence:IS1294"
     gene            33762..33950
                     /locus_tag="CP0042"
                     /db_xref="GeneID:1238242"
     CDS             33762..33950
                     /locus_tag="CP0042"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858175.1"
                     /db_xref="GeneID:1238242"
                     /translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
     gene            33960..35159
                     /locus_tag="CP0043"
                     /db_xref="GeneID:1238140"
     CDS             33960..35159
                     /locus_tag="CP0043"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858176.1"
                     /db_xref="GeneID:1238140"
                     /translation="MLSAFTPRPLKRLFTANQCWTSFLDAGGLRDIEVEAVTKMLACG
                     TRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWVHL
                     VFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHP
                     HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITT
                     ESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLS
                     FRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRA
                     LGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDIS
                     LLRYMPA"
     misc_feature    33987..35096
                     /locus_tag="CP0043"
                     /note="IS91 family transposase; Region: transpos_IS91;
                     NF033538"
                     /db_xref="CDD:411173"
     mobile_element  complement(35330..36133)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS150"
     gene            complement(35565..36086)
                     /locus_tag="CP0044"
                     /db_xref="GeneID:1238103"
     CDS             complement(35565..36086)
                     /locus_tag="CP0044"
                     /codon_start=1
                     /transl_table=11
                     /product="IS150 ORF1(ORF A)"
                     /protein_id="NP_858177.1"
                     /db_xref="GeneID:1238103"
                     /translation="MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVA
                     LYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLK
                     VYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLVY
                     LKKLKALAHPTKK"
     misc_feature    complement(35748..36086)
                     /locus_tag="CP0044"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     misc_feature    complement(<35568..35891)
                     /locus_tag="CP0044"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     gene            36124..36507
                     /locus_tag="CP0045"
                     /db_xref="GeneID:1238189"
     CDS             36124..36507
                     /locus_tag="CP0045"
                     /codon_start=1
                     /transl_table=11
                     /product="IS100 ORF2"
                     /protein_id="NP_858178.1"
                     /db_xref="GeneID:1238189"
                     /translation="MQYISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMY
                     TRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAI
                     AMGYEAFKIFYDISKISLELYHNIH"
     misc_feature    36124..>36447
                     /locus_tag="CP0045"
                     /note="P-loop containing Nucleoside Triphosphate
                     Hydrolases; Region: P-loop_NTPase; cl38936"
                     /db_xref="CDD:393306"
     misc_feature    36394..36417
                     /locus_tag="CP0045"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    36397..36420
                     /locus_tag="CP0045"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     mobile_element  36133..36447
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS100"
     gene            complement(36449..37237)
                     /gene="virF"
                     /locus_tag="CP0046"
                     /db_xref="GeneID:1238022"
     CDS             complement(36449..37237)
                     /gene="virF"
                     /locus_tag="CP0046"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator VirF"
                     /protein_id="NP_858179.2"
                     /db_xref="GeneID:1238022"
                     /translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
                     IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
                     KKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
                     DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
                     LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
     misc_feature    complement(36473..37153)
                     /gene="virF"
                     /locus_tag="CP0046"
                     /note="transcriptional regulator HilD; Provisional;
                     Region: PRK15185"
                     /db_xref="CDD:185107"
     misc_feature    complement(36473..36718)
                     /gene="virF"
                     /locus_tag="CP0046"
                     /note="helix_turn_helix, arabinose operon control protein;
                     Region: HTH_ARAC; smart00342"
                     /db_xref="CDD:197666"
     gene            37780..38067
                     /locus_tag="CP0047"
                     /db_xref="GeneID:1238172"
     CDS             37780..38067
                     /locus_tag="CP0047"
                     /codon_start=1
                     /transl_table=11
                     /product="IS2 ORF2"
                     /protein_id="NP_858180.1"
                     /db_xref="GeneID:1238172"
                     /translation="MADNGSAYTAHETRQFARELNLEPCTTAVSSPQSNGIAERFMKT
                     MKEDCIAFMPKPRTALHNLAVAIEHYNENHPHSALGYLSPREYRRQRVMST"
     misc_feature    <37780..38052
                     /locus_tag="CP0047"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     gene            38249..38515
                     /gene="ospE2"
                     /locus_tag="CP0048"
                     /db_xref="GeneID:5563318"
     CDS             38249..38515
                     /gene="ospE2"
                     /locus_tag="CP0048"
                     /note="secreted by the Mxi-Spa secretion machinery"
                     /codon_start=1
                     /transl_table=11
                     /product="OspE2"
                     /protein_id="YP_001449236.1"
                     /db_xref="GeneID:5563318"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPAANRTKTLKFTATEMQWLTKINEAGIDEKQSQRYSDF"
     gene            complement(38612..38824)
                     /locus_tag="CP0050"
                     /db_xref="GeneID:1238190"
     CDS             complement(38612..38824)
                     /locus_tag="CP0050"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 encoded protein"
                     /protein_id="NP_858183.2"
                     /db_xref="GeneID:1238190"
                     /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL
                     KSPSYTKSISWQHYRIEDRWSYSSLK"
     mobile_element  38650..39417
                     /mobile_element_type="insertion sequence:IS1"
     gene            38753..38980
                     /gene="insA"
                     /locus_tag="CP0049"
                     /db_xref="GeneID:1238108"
     CDS             38753..38980
                     /gene="insA"
                     /locus_tag="CP0049"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 ORF1"
                     /protein_id="NP_858182.2"
                     /db_xref="GeneID:1238108"
                     /translation="MVRNGKSTAGHQRNLCSHCRKTWQLQFTYTASQPGTHQKIIDMA
                     MNGVGCRASARIMGIGLNTVLRHLKNSGRSR"
     misc_feature    <38753..38812
                     /gene="insA"
                     /locus_tag="CP0049"
                     /note="InsA N-terminal domain; Region: Zn_Tnp_IS1;
                     pfam03811"
                     /db_xref="CDD:281762"
     misc_feature    38831..38968
                     /gene="insA"
                     /locus_tag="CP0049"
                     /note="InsA C-terminal domain; Region: HTH_Tnp_IS1;
                     pfam12759"
                     /db_xref="CDD:289525"
     gene            39007..39402
                     /gene="insB"
                     /locus_tag="CP0051"
                     /db_xref="GeneID:1238107"
     CDS             39007..39402
                     /gene="insB"
                     /locus_tag="CP0051"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 ORF2"
                     /protein_id="NP_858184.1"
                     /db_xref="GeneID:1238107"
                     /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL
                     ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR
                     LGRKSLSFSKSVELHDKVIGHYLNIKHYQ"
     misc_feature    39010..39399
                     /gene="insB"
                     /locus_tag="CP0051"
                     /note="IS1 transposase; Region: DDE_Tnp_IS1; cl00721"
                     /db_xref="CDD:294470"
     mobile_element  39632..41006
                     /mobile_element_type="insertion sequence:ISSfl2"
     gene            complement(39660..40860)
                     /locus_tag="CP0053"
                     /pseudo
                     /db_xref="GeneID:3170822"
     misc_feature    complement(39660..40860)
                     /locus_tag="CP0053"
                     /note="Similar to Shigella flexneri putative transposase
                     for IS110 ref: NP_085282.1 (398 aa). BLAST with identity
                     of 98% in 398 aa. This CDS contains an in-frame stop
                     codon. The sequence has been checked and is believed to be
                     correct."
                     /pseudo
     gene            41197..42888
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /db_xref="GeneID:1238051"
     CDS             41197..42888
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /codon_start=1
                     /transl_table=11
                     /product="invasion plasmid antigen"
                     /protein_id="NP_858187.1"
                     /db_xref="GeneID:1238051"
                     /translation="MIKSTNIQVIGSGIMHQINNIHSLTLFSLPVSLSPSCNEYYLKV
                     WSEWERNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLALANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPQIFFSMGNSA
                     TISAPEHSLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTS
                     GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGL
                     FDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAV
                     KEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEE
                     QKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLA"
     misc_feature    41251..42327
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     Region: LRR; COG4886"
                     /db_xref="CDD:227223"
     misc_feature    41260..41385
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="Type III secretion system leucine rich repeat
                     protein; Region: TTSSLRR; pfam12468"
                     /db_xref="CDD:289251"
     misc_feature    41419..41472
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    41473..41532
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    41533..41589
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    41593..41652
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    41773..41844
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    42076..42702
                     /gene="ipaH2.5"
                     /locus_tag="CP0054"
                     /note="C-terminal novel E3 ligase, LRR-interacting;
                     Region: NEL; pfam14496"
                     /db_xref="CDD:291182"
     mobile_element  42886..44191
                     /mobile_element_type="insertion sequence:IS629"
     gene            42940..43266
                     /locus_tag="CP0055"
                     /db_xref="GeneID:1238101"
     CDS             42940..43266
                     /locus_tag="CP0055"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858188.1"
                     /db_xref="GeneID:1238101"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF
                     DRLWKK"
     misc_feature    42943..43263
                     /locus_tag="CP0055"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            43481..44149
                     /locus_tag="CP0056"
                     /db_xref="GeneID:1238066"
     CDS             43481..44149
                     /locus_tag="CP0056"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858189.1"
                     /db_xref="GeneID:1238066"
                     /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
                     RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGCIVGWRVSSSMGLTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
                     GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGND
                     DLAA"
     misc_feature    43481..44146
                     /locus_tag="CP0056"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     gene            complement(44189..44377)
                     /locus_tag="CP0057"
                     /db_xref="GeneID:1238192"
     CDS             complement(44189..44377)
                     /locus_tag="CP0057"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858190.1"
                     /db_xref="GeneID:1238192"
                     /translation="MCRVPGVSRSGYYDRVQHAPSDRKQSDERLKLEIKVAHIRTRET
                     YGTRRLQTELADNGIIVG"
     misc_feature    complement(<44192..>44377)
                     /locus_tag="CP0057"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     mobile_element  44211..44779
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            complement(44413..44715)
                     /locus_tag="CP0058"
                     /db_xref="GeneID:1238089"
     CDS             complement(44413..44715)
                     /locus_tag="CP0058"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF1"
                     /protein_id="NP_858191.1"
                     /db_xref="GeneID:1238089"
                     /translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
                     VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR"
     misc_feature    complement(<44455..44685)
                     /locus_tag="CP0058"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     gene            complement(44783..45265)
                     /locus_tag="CP0059"
                     /db_xref="GeneID:1238126"
     CDS             complement(44783..45265)
                     /locus_tag="CP0059"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858192.1"
                     /db_xref="GeneID:1238126"
                     /translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
                     RTFVICLEDTLRIVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCTQGH
                     GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
                     "
     misc_feature    complement(44822..45199)
                     /locus_tag="CP0059"
                     /note="N-Acyltransferase superfamily: Various enyzmes that
                     characteristicly catalyze the transfer of an acyl group to
                     a substrate; Region: NAT_SF; cl17182"
                     /db_xref="CDD:418431"
     gene            complement(45256..45558)
                     /locus_tag="CP0060"
                     /db_xref="GeneID:1238125"
     CDS             complement(45256..45558)
                     /locus_tag="CP0060"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858193.2"
                     /db_xref="GeneID:1238125"
                     /translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
                     DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
     misc_feature    complement(45259..45504)
                     /locus_tag="CP0060"
                     /note="Uncharacterized conserved protein, DUF1778 family
                     [Function unknown]; Region: COG4453"
                     /db_xref="CDD:226860"
     gene            45830..46102
                     /locus_tag="CP0060a"
                     /db_xref="GeneID:3170826"
     CDS             45830..46102
                     /locus_tag="CP0060a"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="YP_145811.1"
                     /db_xref="GeneID:3170826"
                     /translation="MSHNLEHQKVHTRMVKEVLKAVARANNHPYKSVFADFITGHPSC
                     TVCFWETFHKMYPDSPYEYVTFCHTCRRFDLYETEAEMKADDPKWW"
     gene            46083..47291
                     /locus_tag="CP0061"
                     /db_xref="GeneID:1238141"
     CDS             46083..47291
                     /locus_tag="CP0061"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858194.1"
                     /db_xref="GeneID:1238141"
                     /translation="MTRSGGDFQPRPLKRLFTTNQCWTSFLDAGGLRDIEVEAVTKML
                     ACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDW
                     VHLVFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLN
                     WHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSH
                     ITTESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGA
                     SLSFRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQV
                     YRALGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNAR
                     DISLLRYMPA"
     misc_feature    46119..47228
                     /locus_tag="CP0061"
                     /note="IS91 family transposase; Region: transpos_IS91;
                     NF033538"
                     /db_xref="CDD:411173"
     mobile_element  46110..47463
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1294"
     gene            47361..47591
                     /locus_tag="CP0062"
                     /db_xref="GeneID:1238193"
     CDS             47361..47591
                     /locus_tag="CP0062"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl1 ORF2"
                     /protein_id="NP_858195.1"
                     /db_xref="GeneID:1238193"
                     /translation="MQREKTPEWREKQKSSRGIRRGQGYRLVFQFPIRERCFGRLKEY
                     RRIATRYDKTARNYLAMVKLGCIRLFYQRLRN"
     misc_feature    <47463..47567
                     /locus_tag="CP0062"
                     /note="DDE superfamily endonuclease; Region: DDE_Tnp_4;
                     cl21562"
                     /db_xref="CDD:389813"
     gene            complement(47740..49194)
                     /gene="ospC2"
                     /locus_tag="CP0063"
                     /db_xref="GeneID:1238023"
     CDS             complement(47740..49194)
                     /gene="ospC2"
                     /locus_tag="CP0063"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858196.1"
                     /db_xref="GeneID:1238023"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
                     FNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFISNGLVDVNKRFQKAN
                     SGDTMLDNAMKSKDSKTIDFLLKNGAVSGKRFGR"
     misc_feature    complement(47749..48624)
                     /gene="ospC2"
                     /locus_tag="CP0063"
                     /note="Shigella flexneri OspC protein; Region:
                     Shigella_OspC; pfam06128"
                     /db_xref="CDD:283728"
     gene            complement(49511..49708)
                     /locus_tag="CP0064"
                     /db_xref="GeneID:1238194"
     CDS             complement(49511..49708)
                     /locus_tag="CP0064"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 encoded protein"
                     /protein_id="NP_858197.1"
                     /db_xref="GeneID:1238194"
                     /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSYASTL
                     KSPSYTKSVSWQHYPLFVERP"
     mobile_element  49534..50214
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1"
     gene            49783..50241
                     /gene="insB"
                     /locus_tag="CP0065"
                     /db_xref="GeneID:1238098"
     CDS             49783..50241
                     /gene="insB"
                     /locus_tag="CP0065"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 ORF2"
                     /protein_id="NP_858198.1"
                     /db_xref="GeneID:1238098"
                     /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD
                     EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG
                     CPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLNRPGNPGD"
     misc_feature    49891..50214
                     /gene="insB"
                     /locus_tag="CP0065"
                     /note="IS1 transposase; Region: DDE_Tnp_IS1; cl00721"
                     /db_xref="CDD:294470"
     mobile_element  50213..51518
                     /mobile_element_type="insertion sequence:IS629"
     gene            50267..50593
                     /locus_tag="CP0066"
                     /db_xref="GeneID:1238097"
     CDS             50267..50593
                     /locus_tag="CP0066"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858199.1"
                     /db_xref="GeneID:1238097"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
                     DRLWKK"
     misc_feature    50267..50530
                     /locus_tag="CP0066"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:304362"
     misc_feature    50270..50590
                     /locus_tag="CP0066"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            50808..51476
                     /locus_tag="CP0067"
                     /db_xref="GeneID:1238067"
     CDS             50808..51476
                     /locus_tag="CP0067"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858200.1"
                     /db_xref="GeneID:1238067"
                     /translation="MLREGIRVARCTVARLMVVMGLAGVLRGKKVRTTISRKAVAAGD
                     RVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
                     GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGND
                     DLAA"
     misc_feature    50808..51473
                     /locus_tag="CP0067"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     gene            51442..51930
                     /locus_tag="CP0068"
                     /db_xref="GeneID:1238195"
     CDS             51442..51930
                     /locus_tag="CP0068"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858201.1"
                     /db_xref="GeneID:1238195"
                     /translation="MLPSETMIWQPEFTDKTLSRKPGAVHAVRQQRSKALLTSLNEWM
                     VEKNGTLSKKSRLGEAFSYVLNQWDALCYYSDDGLAEADNNTAERALRTVCLGKKNYM
                     FFGSDHGGDRGALLYGLIGSCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWNVVLT
                     DK"
     misc_feature    <51505..51858
                     /locus_tag="CP0068"
                     /note="IS66 family transposase; Region: transpos_IS66;
                     NF033517"
                     /db_xref="CDD:411154"
     gene            51950..52576
                     /locus_tag="CP0069"
                     /db_xref="GeneID:1238161"
     CDS             51950..52576
                     /locus_tag="CP0069"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 ORF2"
                     /protein_id="NP_858202.1"
                     /db_xref="GeneID:1238161"
                     /translation="MTLTELLWRESEKLRRYKKEARLPVAKTLSEYDFIQLPELNGAQ
                     FQQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQELR
                     KARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERGSLVITSNH
                     PFSMWGSIFVDETMAVAAADRLIHHGYMFELKGESYRKKTAKAVTSVT"
     misc_feature    51962..52552
                     /locus_tag="CP0069"
                     /note="IstB-like ATP binding N-terminal; Region:
                     IstB_IS21_ATP; cl26739"
                     /db_xref="CDD:331560"
     gene            complement(52745..56839)
                     /gene="sepA"
                     /locus_tag="CP0070"
                     /db_xref="GeneID:1238005"
     CDS             complement(52745..56839)
                     /gene="sepA"
                     /locus_tag="CP0070"
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular serine protease SepA"
                     /protein_id="NP_858203.1"
                     /db_xref="GeneID:1238005"
                     /translation="MNKIYYLKYCHITKSLIAVSELARRVTCKSHRRLSRRVILTSVA
                     ALSLSSAWPALSATVSAEIPYQIFRDFAENKGQFTPGTTNISIYDKQGNLVGKLDKAP
                     MADFSSATITTGSLPPGDHTLYSPQYVVTAKHVSGSDTMSFGYAKNTYTAVGTNNNSG
                     LDIKTRRLSKLVTEVAPAEVSDIGAVSGAYQAGGRFTEFYRLGGGMQYVKDKNGNRTQ
                     VYTNGGFLVGGTVSALNSYNNGQMITAQTGDIFNPANGPLANYLNMGDSGSPLFAYDS
                     LQKKWVLIGVLSSGTNYGNNWVVTTQDFLGQQPQNDFDKTIAYTSGEGVLQWKYDAAN
                     GTGTLTQGNTTWDMHGKKGNDLNAGKNLLFTGNNGEVVLQNSVNQGAGYLQFAGDYRV
                     SALNGQTWMGGGIITDKGTHVLWQVNGVAGDNLHKTGEGTLTVNGTGVNAGGLKVGDG
                     TVILNQQADADGKVQAFSSVGIASGRPTVVLSDSQQVNPDNISWGYRGGRLELNGNNL
                     TFTRLQAADYGAIITNNSEKKSTVTLDLQTLKASDINVPVNTVSIFGGRGAPGDLYYD
                     SSTKQYFILKASSYSPFFSDLNNSSVWQNVGKDRNKAIDTVKQQKIEASSQPYMYHGQ
                     LNGNMDVNIPQLSGKDVLALDGSVNLPEGSITKKSGTLIFQGHPVIHAGTTTSSSQSD
                     WETRQFTLEKLKLDAATFHLSRNGKMQGDINATNGSTVILGSSRVFTDRSDGTGNAVF
                     SVEGSATATTVGDQSDYSGNVTLENKSSLQIMERFTGGIEAYDSTVSVTSQNAVFDRV
                     GSFVNSSLTLGKGAKLTAQSGIFSTGAVDVKENASLTLTGMPSAQKQGYYSPVISTTE
                     GINLEDNASFSVKNMGYLSSDIHAGTTAATINLGDSDADAGKTDSPLFSSLMKGYNAV
                     LRGSITGAQSTVNMINALWYSDGKSEAGALKAKGSRIELGDGKHFATLQVKELSADNT
                     TFLMHTNNSRADQLNVTDKLSGSNNSVLVDFLNKPASEMSVTLITAPKGSDEKTFTAG
                     TQQIGFSNVTPVISTEKTDDATKWVLTGYQTTADAGASKAAKDFMASGYKSFLTEVNN
                     LNKRMGDLRDTQGDAGVWARIMNGTGSADGDYSDNYTHVQIGVDRKHELDGVDLFTGA
                     LLTYTDSNASSHAFSGKNKSVGGGLYASALFNSGAYFDLIGKYLHHDNQHTANFASLG
                     TKDYSSHSWYAGAEVGYRYHLTKESWVEPQIELVYGSVSGKAFSWEDRGMALSMKDKD
                     YNPLIGRTGVDVGRAFSGDDWKITARAGLGYQFDLLANGETVLQDASGEKRFEGEKDS
                     RMLMTVGMNAEIKDNMRLGLELEKSAFGKYNVDNAINANFRYVF"
     misc_feature    complement(54533..56671)
                     /gene="sepA"
                     /locus_tag="CP0070"
                     /note="Immunoglobulin A1 protease; Region: Peptidase_S6;
                     pfam02395"
                     /db_xref="CDD:280543"
     misc_feature    complement(<55238..55639)
                     /gene="sepA"
                     /locus_tag="CP0070"
                     /note="Type V secretory pathway, adhesin AidA [Cell
                     wall/membrane/envelope biogenesis, Intracellular
                     trafficking, secretion, and vesicular transport]; Region:
                     AidA; COG3468"
                     /db_xref="CDD:225999"
     misc_feature    complement(53651..54373)
                     /gene="sepA"
                     /locus_tag="CP0070"
                     /note="Pertactin-like passenger domains (virulence
                     factors), C-terminal, subgroup 1, of autotransporter
                     proteins of the type V secretion system of Gram-negative
                     bacteria. This subgroup includes the passenger domains of
                     Neisseria and Haemophilus IgA1 proteases; Region:
                     PL1_Passenger_AT; cd01343"
                     /db_xref="CDD:238653"
     misc_feature    complement(52748..53977)
                     /gene="sepA"
                     /locus_tag="CP0070"
                     /note="outer membrane autotransporter barrel domain;
                     Region: autotrans_barl; TIGR01414"
                     /db_xref="CDD:273608"
     misc_feature    complement(52787..53530)
                     /gene="sepA"
                     /locus_tag="CP0070"
                     /note="Autotransporter beta-domain; Region:
                     Autotransporter; smart00869"
                     /db_xref="CDD:214872"
     mobile_element  57122..57584
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1294"
     gene            57241..57429
                     /locus_tag="CP0071"
                     /db_xref="GeneID:1238243"
     CDS             57241..57429
                     /locus_tag="CP0071"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858204.1"
                     /db_xref="GeneID:1238243"
                     /translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
     gene            57439..58638
                     /locus_tag="CP0072"
                     /db_xref="GeneID:1238142"
     CDS             57439..58638
                     /locus_tag="CP0072"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858205.1"
                     /db_xref="GeneID:1238142"
                     /translation="MLSAFTPRPLKRLFTANQCWTSFLDAGGLRDIEVEAVTKMLACG
                     TRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWVHL
                     VFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHP
                     HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITT
                     ESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLS
                     FRYLDHKTGETATETLTQRELVARLNQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRA
                     LGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDIS
                     LLRYMPA"
     misc_feature    57496..57801
                     /locus_tag="CP0072"
                     /note="Transposase zinc-binding domain; Region:
                     Zn_Tnp_IS91; pfam14319"
                     /db_xref="CDD:291017"
     misc_feature    57868..58404
                     /locus_tag="CP0072"
                     /note="Putative transposase; Region: Y2_Tnp; pfam04986"
                     /db_xref="CDD:282795"
     mobile_element  57640..58810
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1294"
     mobile_element  complement(58809..59672)
                     /note="partial"
                     /mobile_element_type="insertion sequence:ISSfl1"
     gene            58935..59264
                     /locus_tag="CP0073"
                     /db_xref="GeneID:1238148"
     CDS             58935..59264
                     /locus_tag="CP0073"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl1 ORF1"
                     /protein_id="NP_858206.1"
                     /db_xref="GeneID:1238148"
                     /translation="MFWVLCSSAPWRDLPERYGAWKTVYNRFNRWSKSGVINIIFNRL
                     LSLLDANGFIDWSATALDGSNIRALKCAAGAQKNIPISTEIMGRVALAAVLAPKSIWQ
                     QTEVASR"
     misc_feature    <58935..59057
                     /locus_tag="CP0073"
                     /note="Putative transposase of IS4/5 family (DUF4096);
                     Region: DUF4096; pfam13340"
                     /db_xref="CDD:379129"
     gene            59270..59659
                     /locus_tag="CP0074"
                     /db_xref="GeneID:1238145"
     CDS             59270..59659
                     /locus_tag="CP0074"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl1 ORF2"
                     /protein_id="NP_858207.1"
                     /db_xref="GeneID:1238145"
                     /translation="MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSG
                     RALRNELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIAT
                     RYDKTARNYLAMVKLGCIRLFYQRLRN"
     misc_feature    59375..59635
                     /locus_tag="CP0074"
                     /note="DDE superfamily endonuclease; Region: DDE_Tnp_4;
                     cl21562"
                     /db_xref="CDD:389813"
     mobile_element  59670..60829
                     /mobile_element_type="insertion sequence:IS630"
     gene            59774..60805
                     /locus_tag="CP0075"
                     /db_xref="GeneID:1238087"
     CDS             59774..60805
                     /locus_tag="CP0075"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 orf"
                     /protein_id="NP_858208.1"
                     /db_xref="GeneID:1238087"
                     /translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
                     DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
                     FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSVGIVWRRAAPTLRIRDPHKDEK
                     MAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKYYLAGA
                     LHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWLK
                     ENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPFP
                     GGKHGLAKV"
     misc_feature    59843..59992
                     /locus_tag="CP0075"
                     /note="Homeodomain-like domain; Region: HTH_23; pfam13384"
                     /db_xref="CDD:379154"
     misc_feature    59939..60181
                     /locus_tag="CP0075"
                     /note="Homeodomain-like domain; Region: HTH_32; pfam13565"
                     /db_xref="CDD:379267"
     misc_feature    60299..60673
                     /locus_tag="CP0075"
                     /note="Integrase core domain; Region: rve; cl21549"
                     /db_xref="CDD:389805"
     gene            60987..61271
                     /locus_tag="CP0076"
                     /db_xref="GeneID:1238083"
     CDS             60987..61271
                     /locus_tag="CP0076"
                     /codon_start=1
                     /transl_table=11
                     /product="iso-IS1 ORF1"
                     /protein_id="NP_858209.1"
                     /db_xref="GeneID:1238083"
                     /translation="MRFSMTTVTVHCPRCNSDEVYRHGRSCSRHERFRCRSCKRVFQL
                     TYSYEARKLGVKEQIVEMAHNGAGGRDTARTLKIGINTVIRTLKSSRPGG"
     misc_feature    60993..61262
                     /locus_tag="CP0076"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: InsA; COG3677"
                     /db_xref="CDD:226202"
     misc_feature    60999..61103
                     /locus_tag="CP0076"
                     /note="InsA N-terminal domain; Region: Zn_Tnp_IS1;
                     pfam03811"
                     /db_xref="CDD:281762"
     misc_feature    61122..61259
                     /locus_tag="CP0076"
                     /note="InsA C-terminal domain; Region: HTH_Tnp_IS1;
                     pfam12759"
                     /db_xref="CDD:289525"
     mobile_element  61107..61699
                     /note="partial"
                     /mobile_element_type="insertion sequence:iso-IS1"
     gene            61397..61579
                     /locus_tag="CP0077"
                     /db_xref="GeneID:1238196"
     CDS             61397..61579
                     /locus_tag="CP0077"
                     /codon_start=1
                     /transl_table=11
                     /product="iso-IS1 ORF2"
                     /protein_id="NP_858210.1"
                     /db_xref="GeneID:1238196"
                     /translation="MLAYTCGPRNDETCRELLALLTPFCIGMVTSDDWGSYAREVPEE
                     KHLTGKIFTQRMNVTT"
     misc_feature    <61397..>61564
                     /locus_tag="CP0077"
                     /note="IS1 transposase; Region: DDE_Tnp_IS1; cl00721"
                     /db_xref="CDD:294470"
     gene            62214..63911
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /db_xref="GeneID:1238049"
     CDS             62214..63911
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /codon_start=1
                     /transl_table=11
                     /product="invasion plasmid antigen"
                     /protein_id="NP_858211.1"
                     /db_xref="GeneID:1238049"
                     /translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
                     GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPKHISALIVENNKLTSLPKLPAFLKEL
                     NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
                     FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
                     SFSQLDSSYRINISGNPLSTRVLQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLAD
                     AVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLE
                     KLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL
                     GREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGV
                     TANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYS
                     QRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSRLHHS"
     misc_feature    62220..63866
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /note="type III secretion system effector E3 ubiquitin
                     transferase SlrP; Region: PRK15370"
                     /db_xref="CDD:185268"
     misc_feature    62448..62507
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    62508..62567
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    62688..62747
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    62748..62813
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    62814..62888
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    62889..62954
                     /gene="ipaH7.8"
                     /locus_tag="CP0078"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     gene            64339..66063
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /db_xref="GeneID:1238050"
     CDS             64339..66063
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /codon_start=1
                     /transl_table=11
                     /product="invasion plasmid antigen"
                     /protein_id="NP_858212.1"
                     /db_xref="GeneID:1238050"
                     /translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
                     TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
                     LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
                     LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQSLKYLKVGENQLRRL
                     SRLPQELLALDVSNNLLTSLPENIITLPICTNVNISGNPLSTHVLQSLQRLTSSPDYH
                     GPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR
                     LSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRK
                     TLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTM
                     LAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKR
                     TEADRWAQAEEQKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYR
                     QLTDEVLA"
     misc_feature    64348..64500
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="Type III secretion system leucine rich repeat
                     protein; Region: TTSSLRR; pfam12468"
                     /db_xref="CDD:403610"
     misc_feature    64429..66057
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="type III secretion system effector E3 ubiquitin
                     transferase SlrP; Region: PRK15370"
                     /db_xref="CDD:185268"
     misc_feature    64588..64647
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    64648..64707
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    64708..64770
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    64891..64950
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    64951..65007
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    65011..65079
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    65080..65145
                     /gene="ipaH4.5"
                     /locus_tag="CP0079"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     mobile_element  66061..67365
                     /mobile_element_type="insertion sequence:IS629"
     gene            66115..66441
                     /locus_tag="CP0080"
                     /db_xref="GeneID:1238112"
     CDS             66115..66441
                     /locus_tag="CP0080"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858213.1"
                     /db_xref="GeneID:1238112"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWGRQHERDTGGGDGGLITAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
                     DRLWKK"
     misc_feature    66115..66378
                     /locus_tag="CP0080"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:304362"
     misc_feature    66118..66438
                     /locus_tag="CP0080"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            66656..67369
                     /locus_tag="CP0081"
                     /db_xref="GeneID:1238068"
     CDS             66656..67369
                     /locus_tag="CP0081"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858214.1"
                     /db_xref="GeneID:1238068"
                     /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
                     RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
                     GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKLIMLPSETM
                     IWQPEFTDKTLSRKPGAVQ"
     misc_feature    66656..67282
                     /locus_tag="CP0081"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     mobile_element  67366..67576
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            68288..69691
                     /gene="ipgH"
                     /locus_tag="CP0082"
                     /db_xref="GeneID:1238111"
     CDS             68288..69691
                     /gene="ipgH"
                     /locus_tag="CP0082"
                     /codon_start=1
                     /transl_table=11
                     /product="invasion plasmid gene product"
                     /protein_id="NP_858215.1"
                     /db_xref="GeneID:1238111"
                     /translation="MRQLVISITEGLNMSLFTEPKEIERLPSEEIERLYPVLRYRVFI
                     SIFLGYMGYYFVRNTTSVLSGVLHMSATEIGIISCAGFLSYGISKFVSGLISDRSNSK
                     VFLSLGLFLSGLVNFLIGYIPGIITSVTLFSTMYLLNGWIQGMGYPPGAKTLVFWYEH
                     RERITWATLWNLSHNVGGALAPVLIGFSFGFFGDSALDHARAAFIFPGVLCMAMSVLI
                     YFIQVDRPVSVGLPPIEEWKGNVVSHPAKGREQGPRLSIPDIIRKHIIRNNKLIYCCI
                     YGSFVYILRYGIVSWAPKFLSDSLDVGGKDMGKLASMGGGSVFEIGGVAGMLLAGYLS
                     VRLFRNSKPLTNTLFLALTIILLIAYWYVPSGNEYLWLNYTILILLGLAVYGPVMFIG
                     LYSMELVPKEAAGAASGLSGTFSYIFGSIVATLGMGLVVDYLGWGATFIVLILSAVFA
                     IIFTLMSRERSLEFEKE"
     misc_feature    68402..69661
                     /gene="ipgH"
                     /locus_tag="CP0082"
                     /note="Glycerol-3-Phosphate Transporter of the Major
                     Facilitator Superfamily of transporters; Region: MFS_GlpT;
                     cd17345"
                     /db_xref="CDD:340903"
     gene            69660..69950
                     /locus_tag="CP0083"
                     /db_xref="GeneID:1238197"
     CDS             69660..69950
                     /locus_tag="CP0083"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858216.1"
                     /db_xref="GeneID:1238197"
                     /translation="MNAHWSSKKSNFLRKNIKLLTKYLFFESQGIPDKVDIVSRLKTY
                     GYSISGVETDDGYKALVRAFQLHFRQKNYDGIMDAETAAILYALLEKYFPGK"
     misc_feature    <69723..69932
                     /locus_tag="CP0083"
                     /note="Peptidoglycan recognition proteins (PGRPs) are
                     pattern recognition receptors that bind, and in certain
                     cases, hydrolyze peptidoglycans (PGNs) of bacterial cell
                     walls. PGRPs have been divided into three classes: short
                     PGRPs (PGRP-S), that are small (20...; Region: PGRP;
                     cl02712"
                     /db_xref="CDD:413448"
     mobile_element  70088..71416
                     /mobile_element_type="insertion sequence:iso-IS10R"
     gene            70195..71403
                     /locus_tag="CP0084"
                     /db_xref="GeneID:1238119"
     CDS             70195..71403
                     /locus_tag="CP0084"
                     /codon_start=1
                     /transl_table=11
                     /product="iso-IS10R ORF"
                     /protein_id="NP_858217.1"
                     /db_xref="GeneID:1238119"
                     /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL
                     GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR
                     EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS
                     DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISSLHDMSSSHSKTLGYKR
                     LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR
                     TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL
                     AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL
                     FTHGYVLGKL"
     misc_feature    70465..71178
                     /locus_tag="CP0084"
                     /note="Transposase DDE domain; Region: DDE_Tnp_1;
                     pfam01609"
                     /db_xref="CDD:279886"
     gene            complement(71382..71573)
                     /locus_tag="CP0085"
                     /db_xref="GeneID:1238116"
     CDS             complement(71382..71573)
                     /locus_tag="CP0085"
                     /codon_start=1
                     /transl_table=11
                     /product="IS100 ORF2"
                     /protein_id="NP_858218.1"
                     /db_xref="GeneID:1238116"
                     /translation="MLHEEKLARHQRKQAMYTRMAAFPAVKMFEEYDFTFATGAPQKQ
                     LQSLRSLSSERSPHNFPKT"
     misc_feature    complement(<71436..71540)
                     /locus_tag="CP0085"
                     /note="P-loop containing Nucleoside Triphosphate
                     Hydrolases; Region: P-loop_NTPase; cl21455"
                     /db_xref="CDD:304359"
     mobile_element  complement(71417..71582)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS100"
     gene            complement(71614..72117)
                     /locus_tag="CP0086"
                     /db_xref="GeneID:1238198"
     CDS             complement(71614..72117)
                     /locus_tag="CP0086"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858219.1"
                     /db_xref="GeneID:1238198"
                     /translation="MRATAEEALKRISELYAIEDEIRGLPESECLAVRQQRSKALLTS
                     LHEWMVEKNGTLSKKSRLGEAFSYVLNQWDALCYYSDDGLAEADNNTAERALRAVCLG
                     KKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDDLLPW
                     KVVLPSG"
     misc_feature    complement(71686..>72105)
                     /locus_tag="CP0086"
                     /note="IS66 family transposase; Region: transpos_IS66;
                     NF033517"
                     /db_xref="CDD:411154"
     gene            complement(72090..72881)
                     /locus_tag="CP0087"
                     /db_xref="GeneID:1238069"
     CDS             complement(72090..72881)
                     /locus_tag="CP0087"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858220.1"
                     /db_xref="GeneID:1238069"
                     /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
                     RVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
                     GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKLIMLPSETM
                     IWQPEFTDKTLSRKPGAVQSASPVPPDRARHSGPRITCVRRQKKP"
     misc_feature    complement(72255..72881)
                     /locus_tag="CP0087"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     mobile_element  complement(72172..73476)
                     /mobile_element_type="insertion sequence:IS629"
     gene            complement(73096..73422)
                     /locus_tag="CP0088"
                     /db_xref="GeneID:1238115"
     CDS             complement(73096..73422)
                     /locus_tag="CP0088"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858221.1"
                     /db_xref="GeneID:1238115"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF
                     DRLWKK"
     misc_feature    complement(73099..73419)
                     /locus_tag="CP0088"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     mobile_element  73621..74402
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS100"
     gene            73674..74336
                     /locus_tag="CP0089"
                     /db_xref="GeneID:1238073"
     CDS             73674..74336
                     /locus_tag="CP0089"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase/IS protein"
                     /protein_id="NP_858222.1"
                     /db_xref="GeneID:1238073"
                     /translation="MDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFAT
                     GAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRVGIKVRFTTAADL
                     LLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAM
                     ILTSNLPFGQWDQTFAGDAALTSAMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEAN
                     PE"
     misc_feature    73674..74333
                     /locus_tag="CP0089"
                     /note="transposase/IS protein; Provisional; Region:
                     PRK09183"
                     /db_xref="CDD:181681"
     misc_feature    73881..73904
                     /locus_tag="CP0089"
                     /note="Walker A motif; other site"
                     /db_xref="CDD:99707"
     misc_feature    order(73884..73907,74067..74069)
                     /locus_tag="CP0089"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:99707"
     misc_feature    74055..74072
                     /locus_tag="CP0089"
                     /note="Walker B motif; other site"
                     /db_xref="CDD:99707"
     mobile_element  complement(74540..75036)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1294"
     gene            74709..75071
                     /locus_tag="CP0090"
                     /db_xref="GeneID:1238199"
     CDS             74709..75071
                     /locus_tag="CP0090"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858223.1"
                     /db_xref="GeneID:1238199"
                     /translation="MSGRHIPQQTDIPRVFLQPLHIQSRDGPAVYHPAATQHAFERVT
                     TQELFHHLCIAHFRHWFRFIHPQSTVHLRQLLSTHPVGKEPEVPHHLKKLLRDVLFQP
                     RDQLTLCPERSPHNFPKT"
     gene            complement(74712..74978)
                     /locus_tag="CP0164"
                     /db_xref="GeneID:3170838"
     CDS             complement(74712..74978)
                     /locus_tag="CP0164"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858297.1"
                     /db_xref="GeneID:3170838"
                     /translation="MVRYFGFLANRVCGEKLPQVYRALGMDKPEPVAKVCYAQMVKQF
                     LSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYMPA"
     misc_feature    complement(74775..>74978)
                     /locus_tag="CP0164"
                     /note="IS91 family transposase; Region: transpos_IS91;
                     NF033538"
                     /db_xref="CDD:411173"
     mobile_element  complement(75037..76365)
                     /mobile_element_type="insertion sequence:iso-IS10R"
     gene            complement(75050..76258)
                     /locus_tag="CP0091"
                     /db_xref="GeneID:1238120"
     CDS             complement(75050..76258)
                     /locus_tag="CP0091"
                     /codon_start=1
                     /transl_table=11
                     /product="iso-IS10R ORF"
                     /protein_id="NP_858224.1"
                     /db_xref="GeneID:1238120"
                     /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL
                     GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR
                     EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS
                     DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR
                     LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR
                     TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL
                     AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL
                     FTHGYVLGKL"
     misc_feature    complement(75089..76144)
                     /locus_tag="CP0091"
                     /note="IS4 family transposase; Region: transpos_IS4_2;
                     NF033591"
                     /db_xref="CDD:411213"
     gene            complement(76328..77257)
                     /locus_tag="CP0092"
                     /db_xref="GeneID:1238143"
     CDS             complement(76328..77257)
                     /locus_tag="CP0092"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858225.1"
                     /db_xref="GeneID:1238143"
                     /translation="MTRSGGDFQPRPLKRLFTTNQCWTSFLDAGGLRDIEVEAVTKML
                     ACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDW
                     VHLVFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLN
                     WHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSH
                     ITTESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGA
                     SLSFRYLDHKTGETATETLTQPDESPNDFYQNH"
     misc_feature    complement(76886..77191)
                     /locus_tag="CP0092"
                     /note="Transposase zinc-binding domain; Region:
                     Zn_Tnp_IS91; pfam14319"
                     /db_xref="CDD:291017"
     misc_feature    complement(76367..76819)
                     /locus_tag="CP0092"
                     /note="Putative transposase; Region: Y2_Tnp; pfam04986"
                     /db_xref="CDD:282795"
     gene            complement(77913..79610)
                     /gene="ospD3"
                     /locus_tag="CP0093"
                     /db_xref="GeneID:1238012"
     CDS             complement(77913..79610)
                     /gene="ospD3"
                     /locus_tag="CP0093"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858226.1"
                     /db_xref="GeneID:1238012"
                     /translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
                     SFLLNLNCQVTDHSGRLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
                     EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
                     NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
                     VDRHTPTSMSSIIRWPDNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
                     AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
                     ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
                     AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
                     LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
                     PNGVSGLIIAFQNRNFEAIKTYMGIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
     misc_feature    complement(78771..79562)
                     /gene="ospD3"
                     /locus_tag="CP0093"
                     /note="ShET2 enterotoxin, N-terminal region; Region:
                     Toxin_15; pfam07906"
                     /db_xref="CDD:369588"
     gene            complement(79939..81351)
                     /gene="ospC1"
                     /locus_tag="CP0094"
                     /db_xref="GeneID:1238025"
     CDS             complement(79939..81351)
                     /gene="ospC1"
                     /locus_tag="CP0094"
                     /codon_start=1
                     /transl_table=11
                     /product="protein OspC1"
                     /protein_id="NP_858227.1"
                     /db_xref="GeneID:1238025"
                     /translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
                     KNLKDSANIIKSFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
                     LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
                     GICTKRNTYADDIKKIANHDFVFFGVEISNHQKKHPLNTKHHTVDFGANAYIIDHDSP
                     YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
                     LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
                     VKIREISLEEAVTASNYEEINKQVTNKKIALQALFLSITNQKEDVALYILSNFEITRQ
                     DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
                     NAEMIKLLLKYGATSDNKYI"
     misc_feature    complement(79945..80796)
                     /gene="ospC1"
                     /locus_tag="CP0094"
                     /note="Shigella flexneri OspC protein; Region:
                     Shigella_OspC; pfam06128"
                     /db_xref="CDD:283728"
     gene            complement(81806..82105)
                     /locus_tag="CP0095"
                     /db_xref="GeneID:1238200"
     CDS             complement(81806..82105)
                     /locus_tag="CP0095"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF3"
                     /protein_id="NP_858228.1"
                     /db_xref="GeneID:1238200"
                     /translation="MDTSLAHENARLRALLQTQQDTIHQMAEYNRLLSQRMAAYASEI
                     NRLKALVAKLQRMQFGKSSEKLRAKTERQIPFSRAIYATQALGCSDCSIKAILNS"
     misc_feature    complement(<81878..81970)
                     /locus_tag="CP0095"
                     /note="Transposase C of IS166 homeodomain; Region:
                     LZ_Tnp_IS66; pfam13007"
                     /db_xref="CDD:404034"
     gene            complement(82115..82504)
                     /locus_tag="CP0097"
                     /db_xref="GeneID:1238201"
     CDS             complement(82115..82504)
                     /locus_tag="CP0097"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858230.2"
                     /db_xref="GeneID:1238201"
                     /translation="MTLPVFITVIADHDKPQPSGCLLESQGSLCPICRQRITHETGWN
                     VHHKVKKVMGAVKNYLTLSCYIQIAIDSYTVVKPALSKRAYKGLSGVPGNRYAPFLGE
                     GSPAMNCPYPTNIQNERNVLESAYNPL"
     mobile_element  82435..82651
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS91"
     gene            82466..82654
                     /locus_tag="CP0096"
                     /db_xref="GeneID:1238202"
     CDS             82466..82654
                     /locus_tag="CP0096"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 ORF2"
                     /protein_id="NP_858229.2"
                     /db_xref="GeneID:1238202"
                     /translation="MVCNYRYKNRQCHCLSGGYMARSAKSRKRKPASQRSKLPRYVVK
                     LHEDDFFDEEDAEVLRFD"
     mobile_element  82676..83499
                     /note="partial"
                     /mobile_element_type="insertion sequence:ISSfl1"
     gene            complement(82691..83080)
                     /locus_tag="CP0098"
                     /db_xref="GeneID:1238146"
     CDS             complement(82691..83080)
                     /locus_tag="CP0098"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl1 ORF2"
                     /protein_id="NP_858231.1"
                     /db_xref="GeneID:1238146"
                     /translation="MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSG
                     RALRNELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIAT
                     RYDKTARNYLAMVKLGCIRLFYQRLRN"
     misc_feature    complement(82715..82975)
                     /locus_tag="CP0098"
                     /note="DDE superfamily endonuclease; Region: DDE_Tnp_4;
                     cl21562"
                     /db_xref="CDD:389813"
     gene            complement(83086..83625)
                     /locus_tag="CP0099"
                     /db_xref="GeneID:1238149"
     CDS             complement(83086..83625)
                     /locus_tag="CP0099"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl1 ORF1"
                     /protein_id="NP_858232.1"
                     /db_xref="GeneID:1238149"
                     /translation="MQSRFFTILRSNRHNLCGDLQQGMVHKSDSDELSALRAENARII
                     KPLLPPEPATPRAGRPWAEHRKIINGMFWVLCSSAPWRDLPERYGAWKTVYNRFNRWS
                     KSGVINIIFNRLLSLLDANGFIDWSATALDGSNIRALKCAAGAQKNIPISTEIMGRVA
                     LAAVLAPKSIWQQTEVASR"
     misc_feature    complement(<83470..83556)
                     /locus_tag="CP0099"
                     /note="AE_Prim_S_like: primase domain similar to that
                     found in the small subunit of archaeal and eukaryotic
                     (A/E) DNA primases. The replication machineries of A/Es
                     are distinct from that of bacteria. Primases are
                     DNA-dependent RNA polymerases which synthesis...; Region:
                     AE_Prim_S_like; cl01287"
                     /db_xref="CDD:321433"
     misc_feature    complement(83293..83502)
                     /locus_tag="CP0099"
                     /note="Putative transposase of IS4/5 family (DUF4096);
                     Region: DUF4096; pfam13340"
                     /db_xref="CDD:315909"
     gene            complement(83645..84118)
                     /locus_tag="CP0100"
                     /db_xref="GeneID:1238203"
     CDS             complement(83645..84118)
                     /locus_tag="CP0100"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858233.1"
                     /db_xref="GeneID:1238203"
                     /translation="MSWLISQCAHQCTDNKKTETDAIYDKVRSSYLLSCILKKNKNVG
                     LILHAPSFVSVSEKIARIVMANYSRNWSNSELASAVLMSESSLKRRMYKEVGSISTFV
                     HKIKLTEAIRKLRRTNTPISVISSELGYSSPSYFSKVFFKYLKTYPQNIRKKNGR"
     misc_feature    complement(83648..83947)
                     /locus_tag="CP0100"
                     /note="AraC-type DNA-binding domain and AraC-containing
                     proteins [Transcription]; Region: AraC; COG2207"
                     /db_xref="CDD:225117"
     mobile_element  complement(84223..85586)
                     /note="partial"
                     /mobile_element_type="insertion sequence:ISSfl2"
     gene            84369..85565
                     /locus_tag="CP0101"
                     /db_xref="GeneID:1238094"
     CDS             84369..85565
                     /locus_tag="CP0101"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl2 ORF"
                     /protein_id="NP_858234.1"
                     /db_xref="GeneID:1238094"
                     /translation="MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE
                     NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG
                     EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIL
                     GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR
                     LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP
                     VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN
                     KALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTF
                     YTPQGS"
     misc_feature    84408..84872
                     /locus_tag="CP0101"
                     /note="Transposase; Region: DEDD_Tnp_IS110; pfam01548"
                     /db_xref="CDD:376564"
     misc_feature    85197..85442
                     /locus_tag="CP0101"
                     /note="Transposase IS116/IS110/IS902 family; Region:
                     Transposase_20; pfam02371"
                     /db_xref="CDD:376773"
     gene            complement(85560..85979)
                     /locus_tag="CP0102"
                     /db_xref="GeneID:1238204"
     CDS             complement(85560..85979)
                     /locus_tag="CP0102"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858235.1"
                     /db_xref="GeneID:1238204"
                     /translation="MKKQIFINNKPPVVPYSGTHAKIFKYIEIPLPFFYFIYTSGEPF
                     HISVQNTVIYVSKYNGIFINKLVPFSLLFDRDISVLQRRDICVVRFTSEEISEHNVLF
                     DHDIERLKKISKAQLISPDYVLIDFSSGGPIKLSSML"
     misc_feature    complement(<85602..>85730)
                     /locus_tag="CP0102"
                     /note="Ribonuclease H-like superfamily, including RNase H,
                     HI, HII, HIII, and RNase-like domain IV of spliceosomal
                     protein Prp8; Region: RNase_H_like; cl14782"
                     /db_xref="CDD:301345"
     gene            complement(86204..86844)
                     /locus_tag="CP0104"
                     /pseudo
                     /db_xref="GeneID:3170837"
     misc_feature    complement(86204..86844)
                     /locus_tag="CP0104"
                     /note="Similar to Shigella flexneri orf, conserved
                     hypothetical protein ref: NP_085259.1 (212 aa). BLAST with
                     identity of 99% in 211 aa. This CDS contains an in-frame
                     stop codon. The sequence has been checked and is believed
                     to be correct."
                     /pseudo
     mobile_element  86999..88329
                     /mobile_element_type="insertion sequence:IS2"
     gene            complement(87010..87915)
                     /locus_tag="CP0105"
                     /db_xref="GeneID:1238117"
     CDS             complement(87010..87915)
                     /locus_tag="CP0105"
                     /note="IS2 OrfB; forms an overlapping reading frame with
                     orfA; may form a fusion protein OrfAB due to ribosomal
                     frameshifting; in some cases OrfB is itself expressed;
                     both OrfA and OrfAB bind terminal inverted repeats"
                     /codon_start=1
                     /transl_table=11
                     /product="insertion element IS2 transposase InsD"
                     /protein_id="NP_858238.1"
                     /db_xref="GeneID:1238117"
                     /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS
                     RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL
                     LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW
                     AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE
                     PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL
                     GYRSPREYLRQRACNGLSDNRCLEI"
     misc_feature    complement(87013..87915)
                     /locus_tag="CP0105"
                     /note="IS2 transposase TnpB; Reviewed; Region: PRK09409"
                     /db_xref="CDD:181829"
     gene            complement(87873..88283)
                     /locus_tag="CP0106"
                     /db_xref="GeneID:1238104"
     CDS             complement(87873..88283)
                     /locus_tag="CP0106"
                     /note="IS2 OrfA; forms an overlapping reading frame with
                     orfB; may form a fusion protein OrfAB due to ribosomal
                     frameshifting; both OrfA and OrfAB bind terminal inverted
                     repeats"
                     /codon_start=1
                     /transl_table=11
                     /product="insertion sequence 2 OrfA protein"
                     /protein_id="NP_858239.1"
                     /db_xref="GeneID:1238104"
                     /translation="MIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPG
                     MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL
                     GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE"
     misc_feature    complement(87876..88238)
                     /locus_tag="CP0106"
                     /note="IS2 repressor TnpA; Reviewed; Region: PRK09413"
                     /db_xref="CDD:181833"
     mobile_element  88330..89573
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            complement(88353..89171)
                     /locus_tag="CP0107"
                     /db_xref="GeneID:1238156"
     CDS             complement(88353..89171)
                     /locus_tag="CP0107"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858240.1"
                     /db_xref="GeneID:1238156"
                     /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET
                     YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ
                     TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
                     ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL
                     KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA"
     misc_feature    complement(88371..89159)
                     /locus_tag="CP0107"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     gene            complement(89207..89509)
                     /locus_tag="CP0108"
                     /db_xref="GeneID:1238154"
     CDS             complement(89207..89509)
                     /locus_tag="CP0108"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF1"
                     /protein_id="NP_858241.1"
                     /db_xref="GeneID:1238154"
                     /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW
                     VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR"
     misc_feature    complement(<89249..89479)
                     /locus_tag="CP0108"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     mobile_element  complement(89574..89883)
                     /note="partial"
                     /mobile_element_type="insertion sequence:ISSfl3"
     gene            complement(90030..90515)
                     /locus_tag="CP0109"
                     /db_xref="GeneID:1238124"
     CDS             complement(90030..90515)
                     /locus_tag="CP0109"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858242.1"
                     /db_xref="GeneID:1238124"
                     /translation="MGCVTAPEPLSSFHQVAEFVSSEAVLDDWLKQKELKNQAIGATR
                     TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
                     LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
                     Q"
     misc_feature    complement(90075..90473)
                     /locus_tag="CP0109"
                     /note="N-Acyltransferase superfamily: Various enyzmes that
                     characteristicly catalyze the transfer of an acyl group to
                     a substrate; Region: NAT_SF; cl17182"
                     /db_xref="CDD:418431"
     gene            complement(90503..90787)
                     /locus_tag="CP0110"
                     /db_xref="GeneID:3170830"
     CDS             complement(90503..90787)
                     /locus_tag="CP0110"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858243.2"
                     /db_xref="GeneID:3170830"
                     /translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
                     CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
     misc_feature    complement(90506..90769)
                     /locus_tag="CP0110"
                     /note="Uncharacterized conserved protein, DUF1778 family
                     [Function unknown]; Region: COG4453"
                     /db_xref="CDD:226860"
     gene            91689..91853
                     /locus_tag="CP0111"
                     /db_xref="GeneID:1238244"
     CDS             91689..91853
                     /locus_tag="CP0111"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858244.1"
                     /db_xref="GeneID:1238244"
                     /translation="MTLTTTALNGSSSRRFEGCVWTPPLISHTALHPTSRHWMHSWHT
                     YAGNAEIPGL"
     mobile_element  92075..94808
                     /mobile_element_type="insertion sequence:ISSfl4"
     gene            complement(92107..93708)
                     /locus_tag="CP0112"
                     /db_xref="GeneID:1238079"
     CDS             complement(92107..93708)
                     /locus_tag="CP0112"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF3"
                     /protein_id="NP_858245.1"
                     /db_xref="GeneID:1238079"
                     /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
                     DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
                     PSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
                     DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
                     LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
                     APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLPADA
                     YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
                     PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
                     RVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE
                     VIEKLNDWPSNQVHELLPWNFSSVK"
     misc_feature    complement(93313..93591)
                     /locus_tag="CP0112"
                     /note="Transposase C of IS166 homeodomain; Region:
                     LZ_Tnp_IS66; pfam13007"
                     /db_xref="CDD:289755"
     misc_feature    complement(92890..93366)
                     /locus_tag="CP0112"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3436"
                     /db_xref="CDD:225970"
     misc_feature    complement(93160..93294)
                     /locus_tag="CP0112"
                     /note="zinc-finger binding domain of transposase IS66;
                     Region: zf-IS66; pfam13005"
                     /db_xref="CDD:289753"
     misc_feature    complement(92260..93120)
                     /locus_tag="CP0112"
                     /note="Transposase IS66 family; Region: DDE_Tnp_IS66;
                     pfam03050"
                     /db_xref="CDD:281099"
     misc_feature    complement(92128..92241)
                     /locus_tag="CP0112"
                     /note="IS66 C-terminal element; Region: DDE_Tnp_IS66_C;
                     pfam13817"
                     /db_xref="CDD:290531"
     gene            complement(93705..94055)
                     /locus_tag="CP0113"
                     /db_xref="GeneID:1238163"
     CDS             complement(93705..94055)
                     /locus_tag="CP0113"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF2"
                     /protein_id="NP_858246.1"
                     /db_xref="GeneID:1238163"
                     /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF
                     VFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDR
                     TAWHPDITRDKTRE"
     misc_feature    complement(<93843..94028)
                     /locus_tag="CP0113"
                     /note="IS66 family insertion sequence element accessory
                     protein TnpB; Region: IS66_TnpB; NF033819"
                     /db_xref="CDD:411392"
     gene            complement(94052..94726)
                     /locus_tag="CP0114"
                     /db_xref="GeneID:1238164"
     CDS             complement(94052..94726)
                     /locus_tag="CP0114"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF1"
                     /protein_id="NP_858247.1"
                     /db_xref="GeneID:1238164"
                     /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI
                     HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE
                     FKVRLAKQALQPGAVVARIAREHDINNNLLVKWKSQYEDGLLSDDDIQECMPVPVALT
                     DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE
                     MKGGIR"
     misc_feature    complement(94556..>94663)
                     /locus_tag="CP0114"
                     /note="Homeodomain-like domain; Region: HTH_23; pfam13384"
                     /db_xref="CDD:290120"
     misc_feature    complement(94073..94453)
                     /locus_tag="CP0114"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     misc_feature    complement(94214..94450)
                     /locus_tag="CP0114"
                     /note="Transposase; Region: HTH_Tnp_1; pfam01527"
                     /db_xref="CDD:279821"
     gene            95295..96749
                     /gene="ospC3"
                     /locus_tag="CP0115"
                     /db_xref="GeneID:1238024"
     CDS             95295..96749
                     /gene="ospC3"
                     /locus_tag="CP0115"
                     /note="probably secreted by the Mxi-Spa secretion
                     machinery; function unknown"
                     /codon_start=1
                     /transl_table=11
                     /product="OspC3"
                     /protein_id="NP_858248.1"
                     /db_xref="GeneID:1238024"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSK
                     FNFTKQDVAEMEKMKNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKVN
                     SGDTMLDNAMKSKDSKMIDFLLKNGAILGKRFEI"
     misc_feature    95865..96740
                     /gene="ospC3"
                     /locus_tag="CP0115"
                     /note="Shigella flexneri OspC protein; Region:
                     Shigella_OspC; pfam06128"
                     /db_xref="CDD:283728"
     mobile_element  complement(97023..97446)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            97087..97389
                     /locus_tag="CP0116"
                     /db_xref="GeneID:1238090"
     CDS             97087..97389
                     /locus_tag="CP0116"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF1"
                     /protein_id="NP_858249.1"
                     /db_xref="GeneID:1238090"
                     /translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
                     VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR"
     misc_feature    97117..>97347
                     /locus_tag="CP0116"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     gene            97417..98151
                     /locus_tag="CP0117"
                     /db_xref="GeneID:1238170"
     CDS             97417..98151
                     /locus_tag="CP0117"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858250.1"
                     /db_xref="GeneID:1238170"
                     /translation="MKRCVGYLVYIRTRETYGTRRLQTELADNGIIVGRDRLARLRKE
                     LRLHCKQKRKFRATTNSDHNLPVTPNLLNQNFTPTAPNQVWVADITYVATREGWLYLA
                     GVKDVYTCEIVGYAMGERMMKELTGKALFMALRSQRLPAGLIHHTDRGSQYCAYDYRV
                     IQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFKSRDEAISVIREYIEIFY
                     NRQRRHSRLGNISPAAFREKYHQMAA"
     misc_feature    97441..97581
                     /locus_tag="CP0117"
                     /note="HTH-like domain; Region: HTH_21; pfam13276"
                     /db_xref="CDD:290016"
     misc_feature    97450..98136
                     /locus_tag="CP0117"
                     /note="Transposase InsO and inactivated derivatives
                     [Mobilome: prophages, transposons]; Region: Tra5; COG2801"
                     /db_xref="CDD:225361"
     misc_feature    97657..97995
                     /locus_tag="CP0117"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:279057"
     misc_feature    97912..98112
                     /locus_tag="CP0117"
                     /note="Integrase core domain; Region: rve_3; pfam13683"
                     /db_xref="CDD:290406"
     mobile_element  complement(97445..98194)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            98573..98995
                     /locus_tag="CP0118"
                     /db_xref="GeneID:1238206"
     CDS             98573..98995
                     /locus_tag="CP0118"
                     /codon_start=1
                     /transl_table=11
                     /product="IS150 ORF B"
                     /protein_id="NP_858251.1"
                     /db_xref="GeneID:1238206"
                     /translation="MVDCFDGKVVSWSLSTRPDAELVNTMLDSAVETLNAGERPVIHS
                     DRGGHYRWPGWLERVNAAGLIRSMSRKGCSPDNAACEGFFGRLKTEMYYGRKWSGITP
                     EKFMQQVDAYIRWYNERRIKLSLGAVSPKMYRQQCGLE"
     misc_feature    <98573..98962
                     /locus_tag="CP0118"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     mobile_element  99219..99443
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS21"
     gene            99455..100231
                     /locus_tag="CP0119"
                     /db_xref="GeneID:3170833"
     CDS             99455..100231
                     /locus_tag="CP0119"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="NP_858252.2"
                     /db_xref="GeneID:3170833"
                     /translation="MAEWLGEIQKRVITVCDREADIWHYLYYKVSHGQRGACCTESPA
                     GRGTRQALRTAGSPGNRRKPHAECDAKRRAGSPSGPDVHQLQRSQHKKSRQQRPGAPA
                     HVCLLPGAGRGRCLLASADVRKSGECRRCTTYCQPLRATLADRGIPQGVEKWWYMESL
                     RMQTRDNLERMVVILAFIAVRVLGLRQGGVSEETQNDSCEKILTPTEWKLLWVKLEGK
                     PLPVQAPTLKWAWGDGMTANAQVVPVGASCGMAGQTSGYG"
     misc_feature    99986..>100147
                     /locus_tag="CP0119"
                     /note="Transposase Tn5 dimerisation domain; Region:
                     Dimer_Tnp_Tn5; pfam02281"
                     /db_xref="CDD:280446"
     mobile_element  100290..101663
                     /mobile_element_type="insertion sequence:ISSfl2"
     gene            complement(100321..101517)
                     /locus_tag="CP0120"
                     /db_xref="GeneID:1238095"
     CDS             complement(100321..101517)
                     /locus_tag="CP0120"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl2 ORF"
                     /protein_id="NP_858253.1"
                     /db_xref="GeneID:1238095"
                     /translation="MTESSDYESVLVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE
                     NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG
                     EAKTDARNAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIR
                     GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR
                     LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP
                     VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN
                     KALKRALFLSAFTALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTF
                     YTPQGS"
     misc_feature    complement(100345..101481)
                     /locus_tag="CP0120"
                     /note="IS110 family transposase; Region: transpos_IS110;
                     NF033542"
                     /db_xref="CDD:411177"
     gene            complement(101709..102713)
                     /locus_tag="CP0121"
                     /db_xref="GeneID:1238074"
     CDS             complement(101709..102713)
                     /locus_tag="CP0121"
                     /codon_start=1
                     /transl_table=11
                     /product="IS100 ORF1"
                     /protein_id="NP_858254.1"
                     /db_xref="GeneID:1238074"
                     /translation="MVTFETVMEIKILHKQGMSSRTIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
                     YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
                     PRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGSTVDVETANRHGLRWLHDVA
                     NQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENLVSFDNPVTLFVPLIMGC
                     "
     misc_feature    complement(101802..102686)
                     /locus_tag="CP0121"
                     /note="IS21 family transposase; Region: transpos_IS21;
                     NF033546"
                     /db_xref="CDD:411181"
     mobile_element  complement(101749..102800)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS100"
     gene            104066..104845
                     /gene="ipaJ"
                     /locus_tag="CP0122"
                     /db_xref="GeneID:3170828"
     CDS             104066..104845
                     /gene="ipaJ"
                     /locus_tag="CP0122"
                     /codon_start=1
                     /transl_table=11
                     /product="IpaJ, invasion plasmid antigen"
                     /protein_id="NP_858255.2"
                     /db_xref="GeneID:3170828"
                     /translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
                     NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
                     CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
                     FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
                     PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
     gene            complement(105792..106721)
                     /gene="virB"
                     /locus_tag="CP0123"
                     /db_xref="GeneID:1237991"
     CDS             complement(105792..106721)
                     /gene="virB"
                     /locus_tag="CP0123"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator VirB"
                     /protein_id="NP_858256.1"
                     /db_xref="GeneID:1237991"
                     /translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
                     VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
                     ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
                     SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
                     EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
                     RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
     misc_feature    complement(106077..106622)
                     /gene="virB"
                     /locus_tag="CP0123"
                     /note="ParB/RepB/Spo0J family partition protein; Region:
                     parB_part; TIGR00180"
                     /db_xref="CDD:272946"
     misc_feature    complement(105813..106178)
                     /gene="virB"
                     /locus_tag="CP0123"
                     /note="ParB family; Region: ParB; pfam08775"
                     /db_xref="CDD:400911"
     gene            complement(106938..107174)
                     /gene="acp"
                     /locus_tag="CP0124"
                     /db_xref="GeneID:1238255"
     CDS             complement(106938..107174)
                     /gene="acp"
                     /locus_tag="CP0124"
                     /codon_start=1
                     /transl_table=11
                     /product="Acp, putative acyl carrier protein"
                     /protein_id="NP_858257.1"
                     /db_xref="GeneID:1238255"
                     /translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
                     ISFEFNLRIDESTLEHIITIGDLISVVKNSTKSI"
     misc_feature    complement(106947..107174)
                     /gene="acp"
                     /locus_tag="CP0124"
                     /note="Phosphopantetheine attachment site; Region:
                     PP-binding; cl09936"
                     /db_xref="CDD:415812"
     gene            complement(107178..109079)
                     /gene="ipaA"
                     /locus_tag="CP0125"
                     /db_xref="GeneID:1238056"
     CDS             complement(107178..109079)
                     /gene="ipaA"
                     /locus_tag="CP0125"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858258.1"
                     /db_xref="GeneID:1238056"
                     /translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
                     ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
                     HQNGLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
                     LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
                     DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
                     PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
                     PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKAFNHTPDN
                     SDGIGSDLLTTSSQERSANNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
                     SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
                     LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANIRNYVTETNADTIDKNHAI
                     YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
                     KVLKNINKD"
     misc_feature    complement(108297..108935)
                     /gene="ipaA"
                     /locus_tag="CP0125"
                     /note="Salmonella invasion protein A; Region: SipA;
                     cl19731"
                     /db_xref="CDD:418630"
     misc_feature    complement(107325..107390)
                     /gene="ipaA"
                     /locus_tag="CP0125"
                     /note="SipA vinculin binding site; Region: SipA_VBS;
                     pfam17985"
                     /db_xref="CDD:407829"
     misc_feature    complement(107187..107252)
                     /gene="ipaA"
                     /locus_tag="CP0125"
                     /note="SipA vinculin binding site; Region: SipA_VBS;
                     pfam17985"
                     /db_xref="CDD:407829"
     gene            complement(109088..110086)
                     /gene="ipaD"
                     /locus_tag="CP0126"
                     /db_xref="GeneID:1238053"
     CDS             complement(109088..110086)
                     /gene="ipaD"
                     /locus_tag="CP0126"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858259.1"
                     /db_xref="GeneID:1238053"
                     /translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
                     TMLNDTLHNIRTTNQALKKELSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSRH
                     EYPINKDARELLHSAPKEAELDGDQMISHRELWAKIANSINDINEQYLKVYEHAVSSY
                     TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVNSLKKALEELKEKYKDKPLYPANNTV
                     SQEQANKWLTELGGTIGKVSQKNGGYVVSINMTPIDNMLKSLDNLGGNGEVVLDNAKY
                     QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
     misc_feature    complement(109097..110086)
                     /gene="ipaD"
                     /locus_tag="CP0126"
                     /note="Invasion plasmid antigen IpaD; Region: IpaD;
                     cl05827"
                     /db_xref="CDD:414561"
     gene            complement(110137..111228)
                     /gene="ipaC"
                     /locus_tag="CP0127"
                     /db_xref="GeneID:1238054"
     CDS             complement(110137..111228)
                     /gene="ipaC"
                     /locus_tag="CP0127"
                     /codon_start=1
                     /transl_table=11
                     /product="IpaC, secreted by the Mxi-Spa secretion
                     machinery, required for entry into epithelial cells"
                     /protein_id="NP_858260.2"
                     /db_xref="GeneID:1238054"
                     /translation="MEIQNTKPTQILYTDISTKQTQSSSETQKSQNYQQIAAHIPLNV
                     GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDRSEMSHTLTPENTLDISSL
                     SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
                     AVTQVGITGIGAKKTHSGISDQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
                     QTNSSTKFLGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRTYELNTLSAQQKQ
                     NIGRATMETSAVAGNISTSGGRYASALEEEEQLISQASSKQAEEASQVSKEASQATNQ
                     LIQKLLNIIDSINQSKNSTASQIAGNIRA"
     misc_feature    complement(110140..111228)
                     /gene="ipaC"
                     /locus_tag="CP0127"
                     /note="IpaC/SipC family type III secretion system needle
                     tip complex protein; Region: PRK15373"
                     /db_xref="CDD:185271"
     gene            complement(111248..112990)
                     /gene="ipaB"
                     /locus_tag="CP0128"
                     /db_xref="GeneID:1238055"
     CDS             complement(111248..112990)
                     /gene="ipaB"
                     /locus_tag="CP0128"
                     /codon_start=1
                     /transl_table=11
                     /product="IpaB, secreted by the Mxi-Spa secretion
                     machinery, required for entry into epithelial cells"
                     /protein_id="NP_858261.1"
                     /db_xref="GeneID:1238055"
                     /translation="MHNVSTTTTGFPLAKILASTELGDNTIQAANDAANKLFSLTIAD
                     LTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
                     TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
                     IQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
                     KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
                     SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
                     ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
                     SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
                     KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGS
                     VASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQAN
                     RTDVAKAILQQTTA"
     misc_feature    complement(111251..112990)
                     /gene="ipaB"
                     /locus_tag="CP0128"
                     /note="type III secretion system needle tip complex
                     protein SipB; Region: PRK15374"
                     /db_xref="CDD:185272"
     gene            complement(112996..113463)
                     /gene="ipgC"
                     /locus_tag="CP0129"
                     /db_xref="GeneID:1238043"
     CDS             complement(112996..113463)
                     /gene="ipgC"
                     /locus_tag="CP0129"
                     /codon_start=1
                     /transl_table=11
                     /product="IpgC, cytoplasmic chaperone for IpaB and IpaC"
                     /protein_id="NP_858262.1"
                     /db_xref="GeneID:1238043"
                     /translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
                     DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
                     DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
     misc_feature    complement(113008..113454)
                     /gene="ipgC"
                     /locus_tag="CP0129"
                     /note="type III secretion system translocator chaperone
                     SicA; Region: PRK15331; cl30292"
                     /db_xref="CDD:357168"
     misc_feature    complement(order(113116..113118,113125..113130,
                     113137..113142,113149..113151,113218..113223,
                     113227..113232,113239..113244,113251..113253,
                     113323..113325,113329..113334,113341..113346))
                     /gene="ipgC"
                     /locus_tag="CP0129"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    complement(113272..113346)
                     /gene="ipgC"
                     /locus_tag="CP0129"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    complement(113167..113259)
                     /gene="ipgC"
                     /locus_tag="CP0129"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    complement(113068..113154)
                     /gene="ipgC"
                     /locus_tag="CP0129"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     gene            complement(113520..114146)
                     /gene="ipgB1"
                     /locus_tag="CP0130"
                     /db_xref="GeneID:1238045"
     CDS             complement(113520..114146)
                     /gene="ipgB1"
                     /locus_tag="CP0130"
                     /note="secreted by the Mxi-Spa machinery, function
                     unknown"
                     /codon_start=1
                     /transl_table=11
                     /product="protein IpgB1"
                     /protein_id="NP_858263.1"
                     /db_xref="GeneID:1238045"
                     /translation="MQILNKILPQVEFAIPRPSFDSLSRNKLVKKILSVFNLKQRFPQ
                     KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTTYVSSMINRSIDEMAIHNGV
                     VLTSDNKRNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
                     LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
     misc_feature    complement(113556..114014)
                     /gene="ipgB1"
                     /locus_tag="CP0130"
                     /note="IpaB/EvcA family; Region: IpaB_EvcA; pfam03278"
                     /db_xref="CDD:281295"
     gene            complement(114162..114551)
                     /gene="ipgA"
                     /locus_tag="CP0131"
                     /db_xref="GeneID:1238046"
     CDS             complement(114162..114551)
                     /gene="ipgA"
                     /locus_tag="CP0131"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone IpgA"
                     /protein_id="NP_858264.1"
                     /db_xref="GeneID:1238046"
                     /translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
                     FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
                     PDELIESLYEFLFCIKLTIANITSEVN"
     misc_feature    complement(114165..114521)
                     /gene="ipgA"
                     /locus_tag="CP0131"
                     /note="Tir chaperone protein (CesT) family; Region: CesT;
                     cl08444"
                     /db_xref="CDD:415540"
     gene            complement(114564..116048)
                     /gene="icsB"
                     /locus_tag="CP0132"
                     /db_xref="GeneID:1238057"
     CDS             complement(114564..116048)
                     /gene="icsB"
                     /locus_tag="CP0132"
                     /codon_start=1
                     /transl_table=11
                     /product="IcsB, invasion protein"
                     /protein_id="NP_858265.1"
                     /db_xref="GeneID:1238057"
                     /translation="MILKISNFIDASNTKGPIRVEDTEHGPILIAQKFNLKDLFFRTL
                     STINAKINSQILNEQLKNYRLENQKSLLLFLNTLASEKSAESAFAAYEAAKNSIQHSF
                     TGRDIKLMLNTAERFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
                     TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
                     NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISHNLFGLDE
                     TNMSKFICKKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
                     NDVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
                     TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMTRVLNELKTEATDKKEE
                     IIEKSIKIIDYYNSLKSPDLGTKLYIHDLLQINKLLLNNSHSNI"
     gene            116362..117978
                     /gene="ipgD"
                     /locus_tag="CP0133"
                     /db_xref="GeneID:1238042"
     CDS             116362..117978
                     /gene="ipgD"
                     /locus_tag="CP0133"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858266.1"
                     /db_xref="GeneID:1238042"
                     /translation="MHITNLGLHQVSFQSGDSYKGAEETGKHKGVSVISYQRVKNGER
                     NKGIEALNRLYLQNQTSLTGKSLLFARDRAEVFCEAIKLAGGDTSKIKAMMERLDTYK
                     LGEVNKRHINELNKVISEEIRAQLGIKNKKELQTKIKQIFTDYLNNKNWGPVDKNISH
                     HGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESDHIANMWLSKVVDDEGKE
                     IFSGIRHGVISAYGLKKNSSERAVAARNKAEELVSAALYSRPELLSQALSGKTVDLKI
                     VSTSLLTPTSLTGGEESMLKDQVNALKGLNSKRGEPTKLLIRNSDGLLKEVSVNLKVV
                     TFNFGVNELALKMGLGWRNVDKLNDESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
                     DVIYLANQIKEIVTKKLQKNDNGEPYKLSQRMTLLAYTIGAVPCWNCKSGKDRTGMQD
                     AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
                     LPLSSLELSYSERIGDPKIWNMVKGYSSFV"
     misc_feature    116362..117975
                     /gene="ipgD"
                     /locus_tag="CP0133"
                     /note="Enterobacterial virulence protein IpgD; Region:
                     IpgD; cl19613"
                     /db_xref="CDD:302951"
     gene            117988..118350
                     /gene="ipgE"
                     /locus_tag="CP0134"
                     /db_xref="GeneID:1238041"
     CDS             117988..118350
                     /gene="ipgE"
                     /locus_tag="CP0134"
                     /codon_start=1
                     /transl_table=11
                     /product="IpgE, cytoplasmic chaperone for IpgD"
                     /protein_id="NP_858267.1"
                     /db_xref="GeneID:1238041"
                     /translation="MEDLADVICRALGIPLIDIDDQAIMLDDDVLIYIEKEGDSINLL
                     CPFCALPENINDLIYALSLNYSEKICLATDDEGGNLIARLDLTGINEFEDVYVNTEYY
                     ISRVRWLKDEFARRMKGY"
     misc_feature    117988..118335
                     /gene="ipgE"
                     /locus_tag="CP0134"
                     /note="type III secretion system chaperone; Region:
                     PRK15202"
                     /db_xref="CDD:237922"
     gene            118350..118808
                     /gene="ipgF"
                     /locus_tag="CP0135"
                     /db_xref="GeneID:1238040"
     CDS             118350..118808
                     /gene="ipgF"
                     /locus_tag="CP0135"
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic protein IpgF"
                     /protein_id="NP_858268.1"
                     /db_xref="GeneID:1238040"
                     /translation="MSRFVFILLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
                     FNKSAVNVNNNGSKDYGIMQINDFHSKRLREMGYSEEMLISHPCLSVHYAAKLLNEFM
                     MMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYRRYLRIAAESKQNNRRI"
     misc_feature    118350..118805
                     /gene="ipgF"
                     /locus_tag="CP0135"
                     /note="lysozyme-like domains; Region: Lyz-like; cl00222"
                     /db_xref="CDD:412234"
     gene            118817..119932
                     /gene="mxiG"
                     /locus_tag="CP0136"
                     /db_xref="GeneID:1238032"
     CDS             118817..119932
                     /gene="mxiG"
                     /locus_tag="CP0136"
                     /codon_start=1
                     /transl_table=11
                     /product="MxiG protein"
                     /protein_id="NP_858269.1"
                     /db_xref="GeneID:1238032"
                     /translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
                     EFGNDNFPENIIPVTDSKSDGIIYLTISKDNICQFSDEKGEQIDINSQFNSFEYDGIS
                     FHLKNMREDKSRGHILNGMYKNHSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
                     RYGIVNTGQCNYILAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQRFP
                     FINLYVLNLVSDKAELLVFLSKERNSSKDTELDKLKNALIVEFPYIKNIKFNYLSDHN
                     ARGDAKGIFTKVNVQYKEICENNKVTYSVREELTDEKLELINRLISEHKNIYGDQYIE
                     FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
     misc_feature    118859..119914
                     /gene="mxiG"
                     /locus_tag="CP0136"
                     /note="Type III secretion system protein PrgH-EprH (PrgH);
                     Region: PrgH; cl12363"
                     /db_xref="CDD:416479"
     gene            119940..120191
                     /gene="mxiH"
                     /locus_tag="CP0137"
                     /db_xref="GeneID:1238256"
     CDS             119940..120191
                     /gene="mxiH"
                     /locus_tag="CP0137"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiH"
                     /protein_id="NP_858270.1"
                     /db_xref="GeneID:1238256"
                     /translation="MSVTVPNDDWTLSSLSETFDDGTQTLQGELTLALDKLAKNPSNP
                     QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
     misc_feature    119961..120188
                     /gene="mxiH"
                     /locus_tag="CP0137"
                     /note="Type III secretion needle MxiH, YscF, SsaG, EprI,
                     PscF, EscF; Region: T3SS_needle_F; cl09641"
                     /db_xref="CDD:415677"
     gene            120204..120497
                     /gene="mxiI"
                     /locus_tag="CP0138"
                     /db_xref="GeneID:1238257"
     CDS             120204..120497
                     /gene="mxiI"
                     /locus_tag="CP0138"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiI"
                     /protein_id="NP_858271.1"
                     /db_xref="GeneID:1238257"
                     /translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
                     VSQIMEMVSNPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
     misc_feature    120270..120494
                     /gene="mxiI"
                     /locus_tag="CP0138"
                     /note="type III secretion system inner rod subunit SctI;
                     Region: T3SS_SctI; NF038054"
                     /db_xref="CDD:411646"
     gene            120503..121228
                     /gene="mxiJ"
                     /locus_tag="CP0139"
                     /db_xref="GeneID:1238031"
     CDS             120503..121228
                     /gene="mxiJ"
                     /locus_tag="CP0139"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiJ"
                     /protein_id="NP_858272.1"
                     /db_xref="GeneID:1238031"
                     /translation="MIRYKGFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
                     ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
                     KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
                     LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEVKSEFLTNEVIYLFLG
                     MAVLVVILLVWAFKTGWFKRNKI"
     misc_feature    120554..121084
                     /gene="mxiJ"
                     /locus_tag="CP0139"
                     /note="type III secretion apparatus lipoprotein, YscJ/HrcJ
                     family; Region: III_secr_YscJ; TIGR02544"
                     /db_xref="CDD:274190"
     gene            121225..121752
                     /gene="mxiK"
                     /locus_tag="CP0140"
                     /db_xref="GeneID:1238030"
     CDS             121225..121752
                     /gene="mxiK"
                     /locus_tag="CP0140"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiK"
                     /protein_id="NP_858273.1"
                     /db_xref="GeneID:1238030"
                     /translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
                     NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
                     ISKQGEAAIRSGFWHLIAWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
                     QYAKRHFTGIQTSCL"
     misc_feature    121255..121749
                     /gene="mxiK"
                     /locus_tag="CP0140"
                     /note="type III secretion apparatus protein OrgA/MxiK;
                     Region: OrgA_MxiK; TIGR02555"
                     /db_xref="CDD:131606"
     gene            121694..122389
                     /gene="mxiN"
                     /locus_tag="CP0141"
                     /db_xref="GeneID:1238027"
     CDS             121694..122389
                     /gene="mxiN"
                     /locus_tag="CP0141"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiN"
                     /protein_id="NP_858274.2"
                     /db_xref="GeneID:1238027"
                     /translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
                     KAICVIKEATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
                     TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
                     KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHKKLRQ
                     IAEDLLKENPVND"
     misc_feature    121757..>122260
                     /gene="mxiN"
                     /locus_tag="CP0141"
                     /note="oxygen-regulated invasion protein OrgB; Region:
                     PRK15322"
                     /db_xref="CDD:185222"
     gene            122382..122789
                     /gene="mxiL"
                     /locus_tag="CP0142"
                     /db_xref="GeneID:1238029"
     CDS             122382..122789
                     /gene="mxiL"
                     /locus_tag="CP0142"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiL"
                     /protein_id="NP_858275.1"
                     /db_xref="GeneID:1238029"
                     /translation="MINQINASNALQQRLNSEEVVNLNERLSSSQSFDEDIIYEIMQY
                     FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
                     SIYNNIDFYIKTTTFDSLISVFEAGREADDSTW"
     gene            122773..123201
                     /gene="mxiM"
                     /locus_tag="CP0143"
                     /db_xref="GeneID:1238028"
     CDS             122773..123201
                     /gene="mxiM"
                     /locus_tag="CP0143"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiM"
                     /protein_id="NP_858276.2"
                     /db_xref="GeneID:1238028"
                     /translation="MIRHGSNKLKIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
                     YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
                     AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
     misc_feature    122854..123198
                     /gene="mxiM"
                     /locus_tag="CP0143"
                     /note="Shigella Pilot protein MxiM; Region:
                     lipocalin_MxiM; cd14493"
                     /db_xref="CDD:381188"
     misc_feature    order(122866..122868,122878..122880,122932..122934,
                     122938..122940,122953..122955,122959..122961,
                     122965..122967,122986..122988,122992..122994,
                     122998..123000,123019..123021,123025..123027,
                     123109..123111,123115..123117,123121..123123,
                     123148..123150,123154..123156,123160..123162,
                     123172..123174,123178..123180,123184..123186)
                     /gene="mxiM"
                     /locus_tag="CP0143"
                     /note="ligand binding cavity [chemical binding]; other
                     site"
                     /db_xref="CDD:381188"
     gene            123331..123963
                     /gene="mxiE"
                     /locus_tag="CP0144"
                     /db_xref="GeneID:1238033"
     CDS             123331..123963
                     /gene="mxiE"
                     /locus_tag="CP0144"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC-like family protein MxiE"
                     /protein_id="NP_858277.1"
                     /db_xref="GeneID:1238033"
                     /translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
                     EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLV
                     LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVF
                     LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
     misc_feature    123406..123945
                     /gene="mxiE"
                     /locus_tag="CP0144"
                     /note="AraC family transcriptional regulator InvF; Region:
                     PRK15340"
                     /db_xref="CDD:185240"
     gene            123950..125650
                     /gene="mxiD"
                     /locus_tag="CP0145"
                     /db_xref="GeneID:1238034"
     CDS             123950..125650
                     /gene="mxiD"
                     /locus_tag="CP0145"
                     /codon_start=1
                     /transl_table=11
                     /product="outermembrane protein MxiD"
                     /protein_id="NP_858278.1"
                     /db_xref="GeneID:1238034"
                     /translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
                     VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKLTLLVGLIWYKDGNAL
                     YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
                     LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
                     NNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
                     VKGNDQQIQIIRDIITQLDIAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
                     SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
                     LVGERNSSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
                     EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFKYKTSNISN
                     IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
                     "
     misc_feature    123953..125647
                     /gene="mxiD"
                     /locus_tag="CP0145"
                     /note="EscC/YscC/HrcC family type III secretion system
                     outer membrane ring protein; Region: PRK15339"
                     /db_xref="CDD:237948"
     gene            125669..126736
                     /gene="mxiC"
                     /locus_tag="CP0146"
                     /db_xref="GeneID:1238035"
     CDS             125669..126736
                     /gene="mxiC"
                     /locus_tag="CP0146"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein"
                     /protein_id="NP_858279.1"
                     /db_xref="GeneID:1238035"
                     /translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
                     IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
                     LDRDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVELLTKIINEIISGSEKSVNAG
                     INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
                     EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
                     QLLLTLLYIFQYPSESEQILTSVIEVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
                     EIAINILRELVTSAYKKELSR"
     misc_feature    125717..126727
                     /gene="mxiC"
                     /locus_tag="CP0146"
                     /note="YopN/LcrE/InvE/MxiC type III secretion system
                     gatekeeper; Region: PRK15338"
                     /db_xref="CDD:237947"
     gene            126749..128809
                     /gene="mxiA"
                     /locus_tag="CP0147"
                     /db_xref="GeneID:1238036"
     CDS             126749..128809
                     /gene="mxiA"
                     /locus_tag="CP0147"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiA"
                     /protein_id="NP_858280.1"
                     /db_xref="GeneID:1238036"
                     /translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
                     IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
                     GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
                     HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
                     NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
                     GTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKINANDMEGLIERIRSQFFIDY
                     GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
                     SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
                     QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
                     LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
                     VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
                     LKTI"
     misc_feature    126749..128806
                     /gene="mxiA"
                     /locus_tag="CP0147"
                     /note="EscV/YscV/HrcV family type III secretion system
                     export apparatus protein; Region: PRK15337"
                     /db_xref="CDD:237946"
     gene            128822..129223
                     /gene="spa15"
                     /locus_tag="CP0148"
                     /db_xref="GeneID:1238004"
     CDS             128822..129223
                     /gene="spa15"
                     /locus_tag="CP0148"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein Spa15"
                     /protein_id="NP_858281.1"
                     /db_xref="GeneID:1238004"
                     /translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
                     IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
                     VIKDDYVHDGIVFAEILHEFYQRMEILNGVL"
     misc_feature    128834..129220
                     /gene="spa15"
                     /locus_tag="CP0148"
                     /note="Class IB type III secretion system chaperone
                     protein, similar to Shigella flexneri Spa15; Region:
                     T3SC_IB_Spa15-like; cd17035"
                     /db_xref="CDD:409319"
     misc_feature    order(128972..128974,128978..128980,129083..129085,
                     129089..129097,129122..129124,129128..129130)
                     /gene="spa15"
                     /locus_tag="CP0148"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:409319"
     gene            129227..130519
                     /gene="spa47"
                     /locus_tag="CP0149"
                     /db_xref="GeneID:1237998"
     CDS             129227..130519
                     /gene="spa47"
                     /locus_tag="CP0149"
                     /note="Invasion protein InvC; necessary for efficient
                     entry of S.typhimurium into cultured epithelial cells.
                     Probable catalytic subunit of a protein translocase"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase SpaL"
                     /protein_id="NP_858282.1"
                     /db_xref="GeneID:1237998"
                     /translation="MSYTKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
                     IVARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
                     TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGIKVIDSLLTCGEGQRMGIFAS
                     AGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
                     SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
                     SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
                     QKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIEELRTIIDFGEYKPGENA
                     SQDKIYNKISVVESFLKQDYRLGFTYEQTMELIGETIR"
     misc_feature    129236..130516
                     /gene="spa47"
                     /locus_tag="CP0149"
                     /note="FliI/YscN family ATPase; Region: PRK08149"
                     /db_xref="CDD:236166"
     gene            130612..130950
                     /gene="spa13"
                     /locus_tag="CP0150"
                     /db_xref="GeneID:1238258"
     CDS             130612..130950
                     /gene="spa13"
                     /locus_tag="CP0150"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein Spa13"
                     /protein_id="NP_858283.1"
                     /db_xref="GeneID:1238258"
                     /translation="MEALDKRIIYFLQLENDLEPVGAQSVSQLFNTRRKIAIVKKHII
                     QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
                     SQEDMKYGIR"
     gene            130937..131815
                     /gene="spa32"
                     /locus_tag="CP0151"
                     /db_xref="GeneID:1238001"
     CDS             130937..131815
                     /gene="spa32"
                     /locus_tag="CP0151"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein Spa32"
                     /protein_id="NP_858284.1"
                     /db_xref="GeneID:1238001"
                     /translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
                     SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
                     DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
                     LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
                     MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
                     NKNNSTGYNEQSEEEC"
     gene            131944..132690
                     /gene="spa33"
                     /locus_tag="CP0152"
                     /db_xref="GeneID:1238000"
     CDS             131944..132690
                     /gene="spa33"
                     /locus_tag="CP0152"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein Spa33"
                     /protein_id="NP_858285.1"
                     /db_xref="GeneID:1238000"
                     /translation="MCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSS
                     VFSIPELSDKITFRITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDSLHHL
                     LEFCLGSSNVRLATLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSES
                     NGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNI
                     KVNGSLVGHGELVSIEDGYGIEISSWMVKE"
     misc_feature    <132181..132678
                     /gene="spa33"
                     /locus_tag="CP0152"
                     /note="Flagellar motor switch/type III secretory pathway
                     protein FliN [Cell motility, Intracellular trafficking,
                     secretion, and vesicular transport]; Region: FliN;
                     cl27610"
                     /db_xref="CDD:332431"
     gene            132695..133345
                     /gene="spaP"
                     /locus_tag="CP0153"
                     /db_xref="GeneID:1238003"
     CDS             132695..133345
                     /gene="spaP"
                     /locus_tag="CP0153"
                     /note="part of a type III secretory system probably
                     involved in invasion into eukaryotic cells"
                     /codon_start=1
                     /transl_table=11
                     /product="surface presentation of antigens protein SpaP"
                     /protein_id="NP_858286.1"
                     /db_xref="GeneID:1238003"
                     /translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
                     QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQY
                     LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
                     FVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINIPA"
     misc_feature    132695..133342
                     /gene="spaP"
                     /locus_tag="CP0153"
                     /note="EscR/YscR/HrcR family type III secretion system
                     export apparatus protein; Region: spaP; PRK12796"
                     /db_xref="CDD:237209"
     gene            133360..133620
                     /gene="spa9"
                     /locus_tag="CP0154"
                     /db_xref="GeneID:1238259"
     CDS             133360..133620
                     /gene="spa9"
                     /locus_tag="CP0154"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein Spa9"
                     /protein_id="NP_858287.1"
                     /db_xref="GeneID:1238259"
                     /translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLSIGLLQTVTQLQE
                     QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
     misc_feature    133366..133608
                     /gene="spa9"
                     /locus_tag="CP0154"
                     /note="type III secretion protein, HrpO family; Region:
                     fliQ_rel_III; TIGR01403"
                     /db_xref="CDD:130470"
     gene            133620..134390
                     /gene="spa29"
                     /locus_tag="CP0155"
                     /db_xref="GeneID:1238002"
     CDS             133620..134390
                     /gene="spa29"
                     /locus_tag="CP0155"
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein Spa29"
                     /protein_id="NP_858288.2"
                     /db_xref="GeneID:1238002"
                     /translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
                     IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
                     IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
                     FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
                     IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
     misc_feature    133638..134384
                     /gene="spa29"
                     /locus_tag="CP0155"
                     /note="type III secretion protein SpaR/YscT/HrcT; Region:
                     fliR_like_III; TIGR01401"
                     /db_xref="CDD:130468"
     gene            134397..135425
                     /gene="spa40"
                     /locus_tag="CP0156"
                     /db_xref="GeneID:1237999"
     CDS             134397..135425
                     /gene="spa40"
                     /locus_tag="CP0156"
                     /note="Required for surface presentation of invasion
                     plasmid antigens; required for invasion and for secretion
                     of the three ipa proteins"
                     /codon_start=1
                     /transl_table=11
                     /product="surface presentation of antigens protein SpaS"
                     /protein_id="NP_858289.1"
                     /db_xref="GeneID:1237999"
                     /translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
                     FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
                     VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
                     SQVFSSVDGLYLIWGRLFKDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKRE
                     YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
                     ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
                     LEQVENTH"
     misc_feature    134397..135422
                     /gene="spa40"
                     /locus_tag="CP0156"
                     /note="EscU/YscU/HrcU family type III secretion system
                     export apparatus switch protein; Region: PRK08156"
                     /db_xref="CDD:236168"
     gene            complement(136257..136982)
                     /locus_tag="CP0157"
                     /db_xref="GeneID:1238171"
     CDS             complement(136257..136982)
                     /locus_tag="CP0157"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858290.1"
                     /db_xref="GeneID:1238171"
                     /translation="MCRVPGVSRSGYYDRVQHAPSDRKQSDERLKLEIKVAHIRTRET
                     YGTRRLQTELADNGIIVGRDRLARLRKELRLHCKQKRKFRATTSSDHNLPVTPNLLNQ
                     NFTPTAPNQVWVADITYVATREGWLYLAGVKDVYTCEIVGYAMGERMTKELTGKALFM
                     ALRSQHPPAGLIHHSARGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMEIFWGTL
                     KNESLSHYRFKSRDISSAYGKTD"
     misc_feature    complement(136290..136967)
                     /locus_tag="CP0157"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     mobile_element  136287..137384
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            complement(137018..137320)
                     /locus_tag="CP0158"
                     /db_xref="GeneID:1238088"
     CDS             complement(137018..137320)
                     /locus_tag="CP0158"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF1"
                     /protein_id="NP_858291.1"
                     /db_xref="GeneID:1238088"
                     /translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
                     VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR"
     misc_feature    complement(<137060..137290)
                     /locus_tag="CP0158"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     mobile_element  complement(137385..137637)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            137406..137594
                     /locus_tag="CP0159"
                     /db_xref="GeneID:1238207"
     CDS             137406..137594
                     /locus_tag="CP0159"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858292.1"
                     /db_xref="GeneID:1238207"
                     /translation="MESFWGTLKNESLSHYRFKSRDEAISVIREYIEIFYNRQRRHSR
                     LGNISPAAFRIKYYQMTA"
     misc_feature    <137406..137567
                     /locus_tag="CP0159"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     gene            137606..137770
                     /locus_tag="CP0160"
                     /db_xref="GeneID:1238245"
     CDS             137606..137770
                     /locus_tag="CP0160"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858293.1"
                     /db_xref="GeneID:1238245"
                     /translation="MVVSAIASTPQAMCAVTDRAEPRQPDGCKLKTAPVRPGVAARSA
                     EYVCSEDLFY"
     mobile_element  137666..138128
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1294"
     gene            137785..137973
                     /locus_tag="CP0161"
                     /db_xref="GeneID:1238246"
     CDS             137785..137973
                     /locus_tag="CP0161"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858294.1"
                     /db_xref="GeneID:1238246"
                     /translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
     gene            complement(137953..138309)
                     /locus_tag="CP0162"
                     /db_xref="GeneID:1238247"
     CDS             complement(137953..138309)
                     /locus_tag="CP0162"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858295.1"
                     /db_xref="GeneID:1238247"
                     /translation="MSGRVKTRCTQSQSGRRFSCVAIHRSVAFFPQDGQARLPHELVT
                     YLTWGHSGLSQMYMLHAQYPRAAGQHFCDSLNLDIAQTARIQEGCPALVGREQTFQRA
                     GSKSGQHEDGLTPGIL"
     mobile_element  138185..139354
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1294"
     gene            138320..139185
                     /locus_tag="CP0163"
                     /pseudo
                     /db_xref="GeneID:3170829"
     misc_feature    138320..139185
                     /locus_tag="CP0163"
                     /note="Similar to Shigella flexneri IS1294 transposase
                     ref: NP_085231.1 (399 aa). BLAST with identity of 98% in
                     286 aa. This CDS has been truncated. The sequence has been
                     checked and is believed to be correct."
                     /pseudo
     gene            complement(139297..139590)
                     /locus_tag="CP0165"
                     /db_xref="GeneID:1238210"
     CDS             complement(139297..139590)
                     /locus_tag="CP0165"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 ORF2"
                     /protein_id="NP_858298.1"
                     /db_xref="GeneID:1238210"
                     /translation="MRSGWYTWCQRRTGISPRQQFRQHCDSVVLAAAFTRSKQRYGAP
                     RLTDELRAQGYHFNVKTVAASLRRQGLRAKASRKFTYRKLKNQTIPLSTPYAT"
     misc_feature    complement(139354..139497)
                     /locus_tag="CP0165"
                     /note="HTH-like domain; Region: HTH_21; pfam13276"
                     /db_xref="CDD:290016"
     mobile_element  complement(139353..139587)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS3"
     gene            complement(139651..139866)
                     /locus_tag="CP0166"
                     /db_xref="GeneID:1238109"
     CDS             complement(139651..139866)
                     /locus_tag="CP0166"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 ORF1"
                     /protein_id="NP_858299.1"
                     /db_xref="GeneID:1238109"
                     /translation="MTHMTKTVSTSKKTRKQNSPEFCSEALKLAERIGVAAAARELSL
                     YESQLYAWRSKLQQQMTSSERESELPA"
     misc_feature    complement(<139675..139833)
                     /locus_tag="CP0166"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:304362"
     mobile_element  complement(139718..139922)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS3"
     gene            complement(139920..140324)
                     /locus_tag="CP0167"
                     /db_xref="GeneID:1238138"
     CDS             complement(139920..140324)
                     /locus_tag="CP0167"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858300.2"
                     /db_xref="GeneID:1238138"
                     /translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
                     YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTRAGCRVYGICGTTSTLHVAG
                     RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
     gene            complement(140876..141592)
                     /locus_tag="CP0168"
                     /db_xref="GeneID:1238137"
     CDS             complement(140876..141592)
                     /locus_tag="CP0168"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858301.1"
                     /db_xref="GeneID:1238137"
                     /translation="MNDNSLLRNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
                     AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
                     VIFELLILKQYFILPLSLSFIISSLVISIIIRIYGRIFSVSCFSDIPFVREHRIKLIM
                     AGFLVYFWFFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
                     LIFNTEQSGFYEINDVYVRK"
     gene            complement(142609..142983)
                     /locus_tag="CP0170"
                     /db_xref="GeneID:1238211"
     CDS             complement(142609..142983)
                     /locus_tag="CP0170"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858303.2"
                     /db_xref="GeneID:1238211"
                     /translation="MDDRIQAGKADMAACTDEADEPVLGAERTGKGYLEQTMERGKTQ
                     RLAEMAAANSDVPMMKNVAKTIGKRLYGILNAMRHGVSNGNAEALNSKIRLLRIKAKG
                     YRNRERFKLGVMFHYGKLNIAF"
     misc_feature    complement(142636..>142833)
                     /locus_tag="CP0170"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3464"
                     /db_xref="CDD:225995"
     misc_feature    complement(142651..>142833)
                     /locus_tag="CP0170"
                     /note="MULE transposase domain; Region: MULE; cl24015"
                     /db_xref="CDD:305172"
     gene            142682..143110
                     /locus_tag="CP0169"
                     /db_xref="GeneID:1238248"
     CDS             142682..143110
                     /locus_tag="CP0169"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858302.2"
                     /db_xref="GeneID:1238248"
                     /translation="MAFILSSLILLFSASAFPFDTPWRMAFRIPYNLFPIVLATFFIM
                     GTSLLAAAISASRCVFPRSMVCSRYPLPVLSAPSTGSSASSVHAAISAFPAWIRSSIY
                     RCAATGSEFPLPDDDFQQEDADVHSEPPRESWRLNFLRKR"
     mobile_element  143062..144368
                     /mobile_element_type="insertion sequence:IS629"
     gene            143116..143442
                     /locus_tag="CP0171"
                     /db_xref="GeneID:1238110"
     CDS             143116..143442
                     /locus_tag="CP0171"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858304.1"
                     /db_xref="GeneID:1238110"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
                     DRLWKK"
     misc_feature    143116..143379
                     /locus_tag="CP0171"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:389747"
     gene            143657..144064
                     /locus_tag="CP0172"
                     /db_xref="GeneID:1238212"
     CDS             143657..144064
                     /locus_tag="CP0172"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858305.1"
                     /db_xref="GeneID:1238212"
                     /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
                     RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLALHTAA"
     misc_feature    <143663..143746
                     /locus_tag="CP0172"
                     /note="HTH-like domain; Region: HTH_21; pfam13276"
                     /db_xref="CDD:290016"
     misc_feature    143819..>144052
                     /locus_tag="CP0172"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:279057"
     gene            144033..144326
                     /locus_tag="CP0173"
                     /db_xref="GeneID:1238213"
     CDS             144033..144326
                     /locus_tag="CP0173"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858306.1"
                     /db_xref="GeneID:1238213"
                     /translation="MYRWPCTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIH
                     RKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGNDDLAA"
     misc_feature    <144051..144323
                     /locus_tag="CP0173"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     gene            complement(144329..144559)
                     /locus_tag="CP0174"
                     /db_xref="GeneID:1238214"
     CDS             complement(144329..144559)
                     /locus_tag="CP0174"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="NP_858307.1"
                     /db_xref="GeneID:1238214"
                     /translation="MLNKRAFFGAFLIFWGFKFLSMDMNAGYIRAARIHLPNAVEKIA
                     FDRFHVAKQPGEVVDKTRQNEPPRFSWRVFYL"
     misc_feature    complement(<144365..>144508)
                     /locus_tag="CP0174"
                     /note="MULE transposase domain; Region: MULE; cl24015"
                     /db_xref="CDD:305172"
     mobile_element  complement(144712..145094)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS91"
     gene            complement(144804..145160)
                     /locus_tag="CP0175"
                     /db_xref="GeneID:1238173"
     CDS             complement(144804..145160)
                     /locus_tag="CP0175"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 orf"
                     /protein_id="NP_858308.1"
                     /db_xref="GeneID:1238173"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPVQMSRLEHYAGQDEIGLRYNS
                     HRTKREENLVMSGDEFMERFSWHVADKGFRMVIRGPESGEAAITGRCGVRHNGDSEKN
                     GEANHKERDVSAVTEG"
     misc_feature    complement(144933..>145106)
                     /locus_tag="CP0175"
                     /note="IS91 family transposase; Region: transpos_IS91;
                     NF033538"
                     /db_xref="CDD:411173"
     mobile_element  complement(145091..145613)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS91"
     gene            complement(145160..145582)
                     /locus_tag="CP0176"
                     /db_xref="GeneID:1238106"
     CDS             complement(145160..145582)
                     /locus_tag="CP0176"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 ORF2"
                     /protein_id="NP_858309.1"
                     /db_xref="GeneID:1238106"
                     /translation="MACDYRYKNRQYHCLSGSYMARSAKPRKRKPAPQRSKLLRYVVK
                     LHEDDFFDEEEAEVLRFDNFDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEI
                     ARCTEREFATIPAGINADGMYCPECGTVHWPDGVIPPF"
     gene            complement(146245..146484)
                     /locus_tag="CP0177"
                     /db_xref="GeneID:3170825"
     CDS             complement(146245..146484)
                     /locus_tag="CP0177"
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="NP_858310.2"
                     /db_xref="GeneID:3170825"
                     /translation="MPQGGVISPLLSNIILNEFDQYLNKRYLSGKARKDRWYWNHSIQ
                     RGRSTAVKENWQWKPAVAYCCYADDCVPRRRVLGT"
     misc_feature    complement(<146272..>146484)
                     /locus_tag="CP0177"
                     /note="Reverse transcriptase (RT, RNA-dependent DNA
                     polymerase)_like family. An RT gene is usually indicative
                     of a mobile element such as a retrotransposon or
                     retrovirus. RTs occur in a variety of mobile elements,
                     including retrotransposons, retroviruses, group...;
                     Region: RT_like; cl02808"
                     /db_xref="CDD:413489"
     gene            complement(146631..146873)
                     /locus_tag="CP0178"
                     /db_xref="GeneID:1238215"
     CDS             complement(146631..146873)
                     /locus_tag="CP0178"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 ORF2"
                     /protein_id="NP_858311.1"
                     /db_xref="GeneID:1238215"
                     /translation="MCSGYHFNVKTVAASLRRQELSAKASQKFSPISYRAHGLPVSEN
                     LLTQDFYASGPNQKWAGDITYYYSSPTAGKHGAPGY"
     misc_feature    complement(<146679..>146864)
                     /locus_tag="CP0178"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     mobile_element  complement(146678..147046)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS3"
     gene            complement(146846..147409)
                     /locus_tag="CP0179"
                     /db_xref="GeneID:1238118"
     CDS             complement(146846..147409)
                     /locus_tag="CP0179"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858312.1"
                     /db_xref="GeneID:1238118"
                     /translation="MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHHDKRSARA
                     QRDDWLKKEILRVYDENHQVYAVRKVWHQLLREGIRVARCTVARLMAVMGLAGVLRGK
                     KVHTTVSRKAVAAGDRVNRHQGNVPRTPGGPQRLVYVVSAADKDKHTSAVPSALRQRC
                     PQGFYPVQRYGAPRLTDELCALVTTLT"
     misc_feature    complement(<147047..147352)
                     /locus_tag="CP0179"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     mobile_element  complement(147045..147788)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS629"
     gene            complement(147516..147734)
                     /locus_tag="CP0180"
                     /db_xref="GeneID:3170827"
     CDS             complement(147516..147734)
                     /locus_tag="CP0180"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858313.2"
                     /db_xref="GeneID:3170827"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCIL
                     ETLRVWVRQHERDTGGGEVGSPPLNVSV"
     misc_feature    complement(<147534..147731)
                     /locus_tag="CP0180"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            complement(147913..149115)
                     /gene="virA"
                     /locus_tag="CP0181"
                     /db_xref="GeneID:1237992"
     CDS             complement(147913..149115)
                     /gene="virA"
                     /locus_tag="CP0181"
                     /codon_start=1
                     /transl_table=11
                     /product="VirA protein"
                     /protein_id="NP_858314.2"
                     /db_xref="GeneID:1237992"
                     /translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDILLKIITFG
                     IYSPHETLAEKHSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
                     DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
                     CCTSIIPNDDYFHVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
                     LGINEFIDSKKELQMLSYNQVNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
                     AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
                     SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
                     FAIISPDV"
     misc_feature    complement(147919..149028)
                     /gene="virA"
                     /locus_tag="CP0181"
                     /note="EspG protein; Region: EspG; pfam06872"
                     /db_xref="CDD:399689"
     gene            149644..152952
                     /gene="icsA/virG"
                     /locus_tag="CP0182"
                     /db_xref="GeneID:1238021"
     CDS             149644..152952
                     /gene="icsA/virG"
                     /locus_tag="CP0182"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858315.1"
                     /db_xref="GeneID:1238021"
                     /translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
                     LGGPIAFATPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
                     RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
                     DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
                     GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
                     LSVINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
                     SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
                     GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
                     VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
                     ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTA
                     GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
                     NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEIAGHASGITYVAVTNEG
                     GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
                     NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
                     SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
                     TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
                     YMDAWLQYSWFNNTVKGDGLTGEKYSSKGITGALEAGYIYPTIRWTAHNNIDNALYLN
                     PQVQITRHGVKANDYIEHNGTMVTSSGGNNIQAKLGLRTSLISQSCIDKETLRKFEPF
                     LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
                     YRDTQGILGVKYTF"
     misc_feature    150613..>151380
                     /gene="icsA/virG"
                     /locus_tag="CP0182"
                     /note="fibronectin-binding autotransporter adhesin ShdA;
                     Region: PRK15319"
                     /db_xref="CDD:185219"
     misc_feature    151222..151305
                     /gene="icsA/virG"
                     /locus_tag="CP0182"
                     /note="Passenger-associated-transport-repeat; Region:
                     PATR; pfam12951"
                     /db_xref="CDD:403990"
     misc_feature    151525..152949
                     /gene="icsA/virG"
                     /locus_tag="CP0182"
                     /note="outer membrane autotransporter barrel domain;
                     Region: autotrans_barl; TIGR01414"
                     /db_xref="CDD:273608"
     mobile_element  153533..154838
                     /mobile_element_type="insertion sequence:IS629"
     gene            153587..153913
                     /locus_tag="CP0183"
                     /db_xref="GeneID:1238159"
     CDS             153587..153913
                     /locus_tag="CP0183"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858316.1"
                     /db_xref="GeneID:1238159"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF
                     DRLWKK"
     misc_feature    153590..153910
                     /locus_tag="CP0183"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            154128..154796
                     /locus_tag="CP0184"
                     /db_xref="GeneID:1238064"
     CDS             154128..154796
                     /locus_tag="CP0184"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858317.1"
                     /db_xref="GeneID:1238064"
                     /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
                     RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLVYTQRLKEAGLLASTGSTGDSYDNAMAESIN
                     GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGND
                     DLAA"
     misc_feature    154128..154793
                     /locus_tag="CP0184"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     gene            155137..156789
                     /gene="ushA"
                     /locus_tag="CP0185"
                     /db_xref="GeneID:1237993"
     CDS             155137..156789
                     /gene="ushA"
                     /locus_tag="CP0185"
                     /note="catalyzes the degradation of periplasmic
                     UDP-glucose to uridine, glucose-1-phosphate and inorganic
                     phosphate; specific for uridine nucleotides"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="NP_858318.2"
                     /db_xref="GeneID:1237993"
                     /translation="MIPLKKNITLIMFTLSLLTGNPAIAYETDKVYKITVLHTNDHHG
                     HFWRNNHGEYGLSSQKTLVDNIRQKVINNGGSVLLLSGGDINTGVPESDLQKAEPDIR
                     GMNLIGYDAMAVGNHEFDNPLNILRQQEKWATFPFLSANIYQKSTGRRLFSPWKIFIR
                     QNLKIAVIGLTTDDTAKTGNSEYFTDIEFRQPAAEARSVIDELNQQEKPDIIIAATHM
                     GHYDNGESGSNAPGDVEMARSLPTGSLAMIVGGHSQAPVCMASDNKKQWNYIPGTTCV
                     PDKQNGIWIVQAHEWGKYVGQADFEFCNGTMKLVNYQLHPVNLKMRITREDGKTEFSF
                     YTPEITEDPQMLSLLTPFQNKGKAQLDVKVGVVNGRLEGDRSKVRFVQTSMGHLILSA
                     LTERIDADFAVVSGGEIRDSIESGNITYKDILKVQPFGNTVVSIDLTGKEVADYLATV
                     AQMKPDSGAYPQFLNTSFVVKKGKIEMLKIKGKSVDLNKKYRMTTFSFNATGGDGYPR
                     IDNRPGYINTGFIDAEVLIEYIRKHSPLDAASYEPKGEVSWQ"
     misc_feature    155137..156786
                     /gene="ushA"
                     /locus_tag="CP0185"
                     /note="bifunctional UDP-sugar hydrolase/5'-nucleotidase
                     periplasmic precursor; Reviewed; Region: ushA; PRK09558"
                     /db_xref="CDD:236566"
     gene            156758..156943
                     /locus_tag="CP0186"
                     /db_xref="GeneID:1238250"
     CDS             156758..156943
                     /locus_tag="CP0186"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858319.1"
                     /db_xref="GeneID:1238250"
                     /translation="MNQKVKSVGSDNVIDDHHVFFADSRCDFVKVVSAYVCDMGMQLL
                     YFVFLLLPVVAEFNLAA"
     gene            complement(157296..157622)
                     /locus_tag="CP0187"
                     /db_xref="GeneID:1238082"
     CDS             complement(157296..157622)
                     /locus_tag="CP0187"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858320.1"
                     /db_xref="GeneID:1238082"
                     /translation="MPGASNAAMCKITETIKKWRIHRSTAESLLDFARRYNAIVRGWI
                     EYYGKFWSRNFSYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLALVRKQYPKLFAHWYL
                     LRASNE"
     misc_feature    complement(157368..157592)
                     /locus_tag="CP0187"
                     /note="Group II intron, maturase-specific domain; Region:
                     GIIM; pfam08388"
                     /db_xref="CDD:400613"
     gene            complement(157675..158478)
                     /locus_tag="CP0188"
                     /db_xref="GeneID:1238217"
     CDS             complement(157675..158478)
                     /locus_tag="CP0188"
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="NP_858321.1"
                     /db_xref="GeneID:1238217"
                     /translation="MKDRNGSGAKGLPHCADGAAATTGDNADGRTAVKSAKPFPVSKR
                     QVWEAYKRVKANRGAAGIDGQTLAGFDENVTDNLYKLWNRMASGSYMPQAVRRVDIPK
                     ADGGVRPLGIPAVSDRIAQMVVKQILEPVLEPLFHADSYGYRPGKSAHQAIAQARKRC
                     WKFDWVVEVDIKGFFDDIDHDLLLKTVQHHTQARWVVMYIERRLKAPVQMPDGAMLAR
                     GRGTPQGGVISPLLSNLFLHYAFDMWMQRQFPGVPFERYADDVVCHSRI"
     misc_feature    complement(<157681..158352)
                     /locus_tag="CP0188"
                     /note="group II intron reverse transcriptase/maturase;
                     Region: group_II_RT_mat; TIGR04416"
                     /db_xref="CDD:275209"
     misc_feature    complement(<157687..158193)
                     /locus_tag="CP0188"
                     /note="RT_G2_intron: Reverse transcriptases (RTs) with
                     group II intron origin. RT transcribes DNA using RNA as
                     template. Proteins in this subfamily are found in
                     bacterial and mitochondrial group II introns. Their most
                     probable ancestor was a retrotransposable...; Region:
                     RT_G2_intron; cd01651"
                     /db_xref="CDD:238828"
     misc_feature    complement(order(157699..157704,157708..157710,
                     157804..157809,157954..157971))
                     /locus_tag="CP0188"
                     /note="putative active site [active]"
                     /db_xref="CDD:238828"
     misc_feature    complement(order(157702..157704,157807..157809,
                     157954..157971))
                     /locus_tag="CP0188"
                     /note="putative NTP binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:238828"
     misc_feature    complement(157804..157806)
                     /locus_tag="CP0188"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:238828"
     gene            complement(158491..158691)
                     /locus_tag="CP0189"
                     /db_xref="GeneID:1238218"
     CDS             complement(158491..158691)
                     /locus_tag="CP0189"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858322.1"
                     /db_xref="GeneID:1238218"
                     /translation="MVLRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKG
                     NCYDNAPMESFWGTLKNGTGTE"
     misc_feature    complement(158509..>158691)
                     /locus_tag="CP0189"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     mobile_element  158508..158706
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            159087..159836
                     /gene="phoN1"
                     /locus_tag="CP0190"
                     /db_xref="GeneID:1238007"
     CDS             159087..159836
                     /gene="phoN1"
                     /locus_tag="CP0190"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoN1, periplasmic non specific acid
                     ohosphatase"
                     /protein_id="NP_858323.1"
                     /db_xref="GeneID:1238007"
                     /translation="MKRQLFTLSIVGVFSLNTFASFPPGNDVTTKPDLYYLTNDNAID
                     SLALLPPPPQIGSIAFLNDQAMYEKGRLLRNTERGKLAAEDANLSSGGVANVFSAAFG
                     SPITAKDSPELHKLLTNMIEDAGDLATRSAKEYYMRIRPFAFYGVSTCNTKEQDTLSR
                     NGSYPSGHTSIGWATALVLSEINPARQDTILKRGYELGDSRVICGYHWQSDVDAARIV
                     GSAIVATLHSNPVFQAQLQKAKDEFANNQKK"
     misc_feature    159153..159818
                     /gene="phoN1"
                     /locus_tag="CP0190"
                     /note="PAP2, bacterial acid phosphatase or class A
                     non-specific acid phosphatases. These enzymes catalyze
                     phosphomonoester hydrolysis, with optimal activity in low
                     pH conditions. They are secreted into the periplasmic
                     space, and their physiological role remains...; Region:
                     PAP2_acid_phosphatase; cd03397"
                     /db_xref="CDD:239491"
     misc_feature    order(159483..159485,159504..159506,159582..159590,
                     159687..159689,159705..159707,159717..159719)
                     /gene="phoN1"
                     /locus_tag="CP0190"
                     /note="active site"
                     /db_xref="CDD:239491"
     mobile_element  159991..160913
                     /mobile_element_type="insertion sequence:ISSfl1"
     gene            complement(160006..160395)
                     /locus_tag="CP0191"
                     /db_xref="GeneID:1238147"
     CDS             complement(160006..160395)
                     /locus_tag="CP0191"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl1 ORF2"
                     /protein_id="NP_858324.1"
                     /db_xref="GeneID:1238147"
                     /translation="MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSG
                     RALRNELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIAT
                     RYDKTARNYLAIVKLGCIRLFYQRLRN"
     misc_feature    complement(160051..>160395)
                     /locus_tag="CP0191"
                     /note="Transposase DDE domain; Region: DDE_Tnp_1;
                     pfam01609"
                     /db_xref="CDD:279886"
     misc_feature    complement(160030..160290)
                     /locus_tag="CP0191"
                     /note="DDE superfamily endonuclease; Region: DDE_Tnp_4;
                     cl21562"
                     /db_xref="CDD:304434"
     gene            complement(160401..160850)
                     /locus_tag="CP0192"
                     /db_xref="GeneID:1238150"
     CDS             complement(160401..160850)
                     /locus_tag="CP0192"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl1 ORF1"
                     /protein_id="NP_858325.1"
                     /db_xref="GeneID:1238150"
                     /translation="MARYDLPDEAWTIIKPLLPPEPATPRAGRPWAEHRKIINGMFWV
                     LCSSAPWRDLPERYGAWKTVYNRFNRWSKSGVINIIFNRLLSLLDANGFIDWSATALD
                     GSNIRALKCAAGAQKNIPISTEIMGRVALAAVLAPKSIWQQTEVASR"
     misc_feature    complement(160608..160835)
                     /locus_tag="CP0192"
                     /note="Putative transposase of IS4/5 family (DUF4096);
                     Region: DUF4096; pfam13340"
                     /db_xref="CDD:315909"
     gene            complement(160896..161276)
                     /locus_tag="CP0193"
                     /db_xref="GeneID:1238136"
     CDS             complement(160896..161276)
                     /locus_tag="CP0193"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858326.2"
                     /db_xref="GeneID:1238136"
                     /translation="MTMATINARIDDDIKNQADEVLKLMNISQTQAIAAFYQYITEQK
                     KLPFVITSIVKTPHDLLRESTDMLAEALAVISNLQVWTEQQDGIGKAKLMEYYRRLDA
                     LYCCAKEKIGLLSDNRDAELGCVP"
     misc_feature    complement(<161124..161276)
                     /locus_tag="CP0193"
                     /note="RelB antitoxin; Region: RelB; cl01171"
                     /db_xref="CDD:412776"
     gene            complement(161459..161854)
                     /gene="stbB"
                     /locus_tag="CP0194"
                     /db_xref="GeneID:1237996"
     CDS             complement(161459..161854)
                     /gene="stbB"
                     /locus_tag="CP0194"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid stable inheritance protein"
                     /protein_id="NP_858327.1"
                     /db_xref="GeneID:1237996"
                     /translation="MESSDPKKRKKVVAYLHPALYPQDNLTQQTIDSLPVQMRGDFYR
                     QSLICGAALYSVAPRLLTLISVFFSEKITAENLVKLIEQTTGYTSTSIDISVLKNIIE
                     ASSENKSESITSKDDFEEQTRRNLSMLKK"
     misc_feature    complement(161612..161827)
                     /gene="stbB"
                     /locus_tag="CP0194"
                     /note="Plasmid stability protein; Region: Plasmid_stab_B;
                     pfam10784"
                     /db_xref="CDD:119304"
     gene            complement(161854..162813)
                     /gene="stbA"
                     /locus_tag="CP0195"
                     /db_xref="GeneID:1237997"
     CDS             complement(161854..162813)
                     /gene="stbA"
                     /locus_tag="CP0195"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid stable inheritance protein"
                     /protein_id="NP_858328.1"
                     /db_xref="GeneID:1237997"
                     /translation="MLKVSCDDGSTNVKLAWLEDGEVRTSLSGNSFKEGWNPGLFNAG
                     KVYNYVVDEKKYTYDLGSTAVIGTTHVSYQYSTTNLLAIHHALLTSGLQPQDVELTVT
                     LPVTEFFDNDNQPNEERIERKKANVLREISLNKGETFKIKKVNVMPESLPAAFESLKK
                     DKVNKLERSLIIDLGGTTLDCGLILGAFEGISEIRGYSEIGTSRITHTVMNALTKAST
                     PCNYFIADELIKNRHDNEYLQTLINDVAEIKNISHVIDREVKSLAESIRQEISTFSGM
                     NRIYLTGGGAELIYPHIKQYFPNLKVNKVDEPQFALVKAMVHA"
     misc_feature    complement(161857..162810)
                     /gene="stbA"
                     /locus_tag="CP0195"
                     /note="StbA protein; Region: StbA; pfam06406"
                     /db_xref="CDD:310773"
     misc_feature    complement(order(161965..161967,162286..162297,
                     162367..162369,162772..162774,162778..162780,
                     162784..162795))
                     /gene="stbA"
                     /locus_tag="CP0195"
                     /note="nucleotide binding site [chemical binding]; other
                     site"
                     /db_xref="CDD:212669"
     gene            163184..164155
                     /gene="yccB"
                     /locus_tag="CP0196"
                     /db_xref="GeneID:1238018"
     CDS             163184..164155
                     /gene="yccB"
                     /locus_tag="CP0196"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858329.1"
                     /db_xref="GeneID:1238018"
                     /translation="MRHGLMEAACERRIPMPNWCSNRMYFPGEPAQIAEIKRLASGAV
                     TPLYRRATNEGIQLFLAGSAGLLQITENIRSEQCPGVTAAGRGAVSTENIAFTRWLTH
                     LQNGVLLDEQNCLMLHELWLQSGTGQRRWEGLPDDARETITVHFTAKRGDWCDIWGNE
                     DVSVWWNRLCDNVVPEKTMPFDLLTVLPTRLDVEVNGFNGGVLNGVPSAYHWYTERYG
                     VKWPCGYDLNISSQGENFIQVDFDTPWCQPESDVIAELSRRFSCTLEHWYAEQGCDFC
                     GWQLYERGELVNVLWGELEWSSPTDDDEQPEVTGPAWIVDNVAHYGG"
     misc_feature    163316..163849
                     /gene="yccB"
                     /locus_tag="CP0196"
                     /note="Protein of unknown function (DUF1281); Region:
                     DUF1281; pfam06924"
                     /db_xref="CDD:399719"
     misc_feature    163853..164095
                     /gene="yccB"
                     /locus_tag="CP0196"
                     /note="Ferredoxin-like domain in Api92-like protein;
                     Region: DUF1281_C; pfam18406"
                     /db_xref="CDD:408205"
     gene            164152..164463
                     /locus_tag="CP0197"
                     /db_xref="GeneID:3170831"
     CDS             164152..164463
                     /locus_tag="CP0197"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858330.2"
                     /db_xref="GeneID:3170831"
                     /translation="MKYDGDGRATARFFSDKGCRRAPLFTAPADAARHKRCLWSVSRV
                     RRARDGRFYRSRLVSVTVYASPSPFSDERPSSRFRGITLLSKRRRLRYSTVGLTRYRK
                     R"
     gene            164527..165210
                     /gene="ycdA"
                     /locus_tag="CP0198"
                     /db_xref="GeneID:1238134"
     CDS             164527..165210
                     /gene="ycdA"
                     /locus_tag="CP0198"
                     /codon_start=1
                     /transl_table=11
                     /product="methylase"
                     /protein_id="NP_858331.2"
                     /db_xref="GeneID:1238134"
                     /translation="MSRFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRQGRTIAG
                     DKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYT
                     SKAAYVGYRHECAYILAKGRPRLPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESF
                     THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAAN
                     DDWFMPEAA"
     misc_feature    164527..165207
                     /gene="ycdA"
                     /locus_tag="CP0198"
                     /note="putative methylase; Provisional; Region: PRK13699"
                     /db_xref="CDD:184255"
     gene            165211..165432
                     /gene="yceA"
                     /locus_tag="CP0199"
                     /db_xref="GeneID:1238017"
     CDS             165211..165432
                     /gene="yceA"
                     /locus_tag="CP0199"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858332.1"
                     /db_xref="GeneID:1238017"
                     /translation="MNYAGHEKLRAEVAEVANAMCDLRTTMNEMERRYSFNADTLPER
                     LVRQTLFRANRLLMEAYTEILELDSCFKD"
     gene            165429..165629
                     /locus_tag="CP0200"
                     /db_xref="GeneID:3170836"
     CDS             165429..165629
                     /locus_tag="CP0200"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858333.2"
                     /db_xref="GeneID:3170836"
                     /translation="MRGESMYGTCETLCRALAAKYSGDTPLMLVIWSPEEIQALADGM
                     DISLSDHEIRTVLAHLEDIPED"
     misc_feature    165444..>165626
                     /locus_tag="CP0200"
                     /note="Protein of unknown function (DUF1380); Region:
                     DUF1380; pfam07128"
                     /db_xref="CDD:369222"
     gene            165663..165878
                     /locus_tag="CP0201"
                     /db_xref="GeneID:1238219"
     CDS             165663..165878
                     /locus_tag="CP0201"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858334.1"
                     /db_xref="GeneID:1238219"
                     /translation="MEIISNVRENRQVTVPAELLETLTQIAEQALWKREWAARDHGFP
                     LPEYVTRRQAMVDQARSLLKNNTHEND"
     misc_feature    <165663..165851
                     /locus_tag="CP0201"
                     /note="Protein of unknown function (DUF1380); Region:
                     DUF1380; pfam07128"
                     /db_xref="CDD:399840"
     gene            165923..166693
                     /gene="ycfA"
                     /locus_tag="CP0202"
                     /db_xref="GeneID:1238133"
     CDS             165923..166693
                     /gene="ycfA"
                     /locus_tag="CP0202"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858335.1"
                     /db_xref="GeneID:1238133"
                     /translation="MNETLNALICRHARNLLLAQGWPEETDVDQCNPNYPGWISIYVR
                     LDAPRLATLLVNRHDGVLPPHLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQVSF
                     PYAGEWLTEDEIRAVLDAVRDAVCSVSCRGAEDARRIRAALTTSGQTLLTRQTRRFRL
                     VVKESDHPCWLDEDDENLPVVLDAILNRGARFSAVEMYLVSDCIEHILSSGLACDVLR
                     IPDEPPRRWFDRGVLREVVREARAEIRSMADALAKIRK"
     gene            complement(167032..167685)
                     /locus_tag="CP0203"
                     /db_xref="GeneID:1238071"
     CDS             complement(167032..167685)
                     /locus_tag="CP0203"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="NP_858336.1"
                     /db_xref="GeneID:1238071"
                     /translation="MRFVQPRTETQQAIRALHRVRESLIRDKVKTTNQIHGFLLEFGI
                     SLPTGDAVIKRLSLVLAEHEIPEYLSRLLVRLHTHYLYLVEQIAELESELSQSINADD
                     TAQRIMTIPGVGPITASLLSSQLGDGKQFSCSRDFAASTGLVPRQYSTGGKSTLLGIS
                     KRGDKNLRRLLVQCARSFMMQLERQHGKLAEWVREQLNKKHSNVVACALANKLARIA"
     misc_feature    complement(167035..>167685)
                     /locus_tag="CP0203"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3547"
                     /db_xref="CDD:226077"
     misc_feature    complement(167155..167373)
                     /locus_tag="CP0203"
                     /note="Transposase IS116/IS110/IS902 family; Region:
                     Transposase_20; pfam02371"
                     /db_xref="CDD:376773"
     mobile_element  167728..169501
                     /note="partial"
                     /mobile_element_type="insertion sequence:ISSfl4"
     gene            complement(167760..169361)
                     /locus_tag="CP0204"
                     /db_xref="GeneID:1238174"
     CDS             complement(167760..169361)
                     /locus_tag="CP0204"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF3"
                     /protein_id="NP_858337.1"
                     /db_xref="GeneID:1238174"
                     /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
                     DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
                     PSENPIASKPESPGRESSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
                     DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
                     LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
                     APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA
                     YAGYNVLYETGRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
                     PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
                     WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE
                     VIEKLNDWPSNQVHELLPWNFSSVK"
     misc_feature    complement(168966..169244)
                     /locus_tag="CP0204"
                     /note="Transposase C of IS166 homeodomain; Region:
                     LZ_Tnp_IS66; pfam13007"
                     /db_xref="CDD:289755"
     misc_feature    complement(168543..169019)
                     /locus_tag="CP0204"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3436"
                     /db_xref="CDD:225970"
     misc_feature    complement(168813..168947)
                     /locus_tag="CP0204"
                     /note="zinc-finger binding domain of transposase IS66;
                     Region: zf-IS66; pfam13005"
                     /db_xref="CDD:289753"
     misc_feature    complement(167913..168773)
                     /locus_tag="CP0204"
                     /note="Transposase IS66 family; Region: DDE_Tnp_IS66;
                     pfam03050"
                     /db_xref="CDD:281099"
     misc_feature    complement(167781..167894)
                     /locus_tag="CP0204"
                     /note="IS66 C-terminal element; Region: DDE_Tnp_IS66_C;
                     pfam13817"
                     /db_xref="CDD:290531"
     gene            complement(169358..169708)
                     /locus_tag="CP0205"
                     /db_xref="GeneID:1238165"
     CDS             complement(169358..169708)
                     /locus_tag="CP0205"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF2"
                     /protein_id="NP_858338.1"
                     /db_xref="GeneID:1238165"
                     /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF
                     VFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDR
                     TAWHPDITRDKTRE"
     misc_feature    complement(<169496..169681)
                     /locus_tag="CP0205"
                     /note="IS66 family insertion sequence element accessory
                     protein TnpB; Region: IS66_TnpB; NF033819"
                     /db_xref="CDD:411392"
     mobile_element  169496..170461
                     /note="partial"
                     /mobile_element_type="insertion sequence:ISSfl4"
     gene            complement(169705..170379)
                     /locus_tag="CP0206"
                     /db_xref="GeneID:1238166"
     CDS             complement(169705..170379)
                     /locus_tag="CP0206"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF1"
                     /protein_id="NP_858339.1"
                     /db_xref="GeneID:1238166"
                     /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI
                     HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE
                     FKVRLAKQALQPGAVVARIAREHDINNNLLVKWKSQYEDGLLSDDDIQECMPVPVALT
                     DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE
                     MKGGIR"
     misc_feature    complement(170209..>170316)
                     /locus_tag="CP0206"
                     /note="Homeodomain-like domain; Region: HTH_23; pfam13384"
                     /db_xref="CDD:290120"
     misc_feature    complement(169726..170106)
                     /locus_tag="CP0206"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     misc_feature    complement(169867..170103)
                     /locus_tag="CP0206"
                     /note="Transposase; Region: HTH_Tnp_1; pfam01527"
                     /db_xref="CDD:279821"
     gene            complement(170327..171064)
                     /locus_tag="CP0207"
                     /db_xref="GeneID:1238158"
     CDS             complement(170327..171064)
                     /locus_tag="CP0207"
                     /codon_start=1
                     /transl_table=11
                     /product="IS2 ORF2"
                     /protein_id="NP_858340.1"
                     /db_xref="GeneID:1238158"
                     /translation="MDGPRSSHTDDTDVLLGIHHVIGELPTYGYRRVWALLRRQAELD
                     GMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDN
                     GERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTD
                     NGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTVSAPSATSCENCPVWQQ
                     SRPSILMDTNDEFPDNKRYSLLPFLFA"
     misc_feature    complement(170873..>170989)
                     /locus_tag="CP0207"
                     /note="HTH-like domain; Region: HTH_21; pfam13276"
                     /db_xref="CDD:290016"
     misc_feature    complement(170459..170803)
                     /locus_tag="CP0207"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:279057"
     mobile_element  170462..171591
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS2"
     gene            complement(171135..171500)
                     /locus_tag="CP0208"
                     /db_xref="GeneID:1238105"
     CDS             complement(171135..171500)
                     /locus_tag="CP0208"
                     /note="IS2 OrfA; forms an overlapping reading frame with
                     orfB; may form a fusion protein OrfAB due to ribosomal
                     frameshifting; both OrfA and OrfAB bind terminal inverted
                     repeats"
                     /codon_start=1
                     /transl_table=11
                     /product="insertion sequence 2 OrfA protein"
                     /protein_id="NP_858341.2"
                     /db_xref="GeneID:1238105"
                     /translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS
                     QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE
                     YGRAKKWIAHAPLLPGDGE"
     misc_feature    complement(171138..171500)
                     /locus_tag="CP0208"
                     /note="IS2 repressor TnpA; Reviewed; Region: PRK09413"
                     /db_xref="CDD:181833"
     gene            complement(171972..172610)
                     /locus_tag="CP0209"
                     /db_xref="GeneID:1238132"
     CDS             complement(171972..172610)
                     /locus_tag="CP0209"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858342.1"
                     /db_xref="GeneID:1238132"
                     /translation="MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSE
                     LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
                     DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
                     VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
     mobile_element  complement(172791..173131)
                     /note="partial"
                     /mobile_element_type="insertion sequence:iso-IS1"
     gene            complement(172967..173239)
                     /locus_tag="CP0210"
                     /db_xref="GeneID:1238084"
     CDS             complement(172967..173239)
                     /locus_tag="CP0210"
                     /codon_start=1
                     /transl_table=11
                     /product="iso-IS1 ORF1"
                     /protein_id="NP_858343.1"
                     /db_xref="GeneID:1238084"
                     /translation="MATVTVHCPRCHSDEVYRHGRSCSRHERFRCRSCKRVFQLTYSY
                     EARKPGVKEQIVEMAHNGAGGRDTARTLKIGINTVIRTLKSSRPGG"
     misc_feature    complement(<172976..173218)
                     /locus_tag="CP0210"
                     /note="IS1 family transposase; Region: transpos_IS1;
                     NF033558"
                     /db_xref="CDD:411189"
     mobile_element  complement(173356..176109)
                     /mobile_element_type="insertion sequence:ISSfl4"
     gene            173438..174112
                     /locus_tag="CP0211"
                     /db_xref="GeneID:1238167"
     CDS             173438..174112
                     /locus_tag="CP0211"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF1"
                     /protein_id="NP_858344.1"
                     /db_xref="GeneID:1238167"
                     /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI
                     HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE
                     FKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALT
                     DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE
                     MKGGIR"
     misc_feature    173492..173608
                     /locus_tag="CP0211"
                     /note="Homeodomain-like domain; Region: HTH_23; pfam13384"
                     /db_xref="CDD:404292"
     misc_feature    173714..173950
                     /locus_tag="CP0211"
                     /note="Transposase; Region: HTH_Tnp_1; pfam01527"
                     /db_xref="CDD:396214"
     gene            174109..174456
                     /locus_tag="CP0212"
                     /db_xref="GeneID:1238168"
     CDS             174109..174456
                     /locus_tag="CP0212"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF2"
                     /protein_id="NP_858345.1"
                     /db_xref="GeneID:1238168"
                     /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF
                     VFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAW
                     PHPKRTERPGIRI"
     misc_feature    174136..174405
                     /locus_tag="CP0212"
                     /note="IS66 family insertion sequence element accessory
                     protein TnpB; Region: IS66_TnpB; NF033819"
                     /db_xref="CDD:411392"
     gene            174476..176077
                     /locus_tag="CP0213"
                     /db_xref="GeneID:1238175"
     CDS             174476..176077
                     /locus_tag="CP0213"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF3"
                     /protein_id="NP_858346.1"
                     /db_xref="GeneID:1238175"
                     /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
                     DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
                     PSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
                     DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
                     LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
                     APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA
                     YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
                     PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
                     WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE
                     VIEKLNDWPSNQVHELLPWNFSSVK"
     misc_feature    174590..174871
                     /locus_tag="CP0213"
                     /note="Transposase C of IS166 homeodomain; Region:
                     LZ_Tnp_IS66; pfam13007"
                     /db_xref="CDD:379018"
     misc_feature    174818..175294
                     /locus_tag="CP0213"
                     /note="Transposase [Mobilome: prophages, transposons];
                     Region: COG3436"
                     /db_xref="CDD:225970"
     misc_feature    175064..175924
                     /locus_tag="CP0213"
                     /note="Transposase IS66 family; Region: DDE_Tnp_IS66;
                     pfam03050"
                     /db_xref="CDD:376980"
     misc_feature    175943..176053
                     /locus_tag="CP0213"
                     /note="IS66 C-terminal element; Region: DDE_Tnp_IS66_C;
                     pfam13817"
                     /db_xref="CDD:379385"
     gene            176266..176499
                     /locus_tag="CP0214"
                     /db_xref="GeneID:1238114"
     CDS             176266..176499
                     /locus_tag="CP0214"
                     /codon_start=1
                     /transl_table=11
                     /product="IS100 ORF2"
                     /protein_id="NP_858347.1"
                     /db_xref="GeneID:1238114"
                     /translation="MLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQ
                     LQSLRSLSFIERNENIVLQGTSDITNPRVGICV"
     misc_feature    176266..>176463
                     /locus_tag="CP0214"
                     /note="P-loop containing Nucleoside Triphosphate
                     Hydrolases; Region: P-loop_NTPase; cl38936"
                     /db_xref="CDD:393306"
     mobile_element  176267..176462
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS100"
     gene            complement(176551..176841)
                     /locus_tag="CP0215"
                     /db_xref="GeneID:1238220"
     CDS             complement(176551..176841)
                     /locus_tag="CP0215"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858348.1"
                     /db_xref="GeneID:1238220"
                     /translation="MNAHWSSKKSNFFRKNIKLLTKYLFFESQGIPDKVDIVSRLKTY
                     GYSISGVETDDGYKALVRAFQLHFRQKNYDGIMDAETAAILYALLEKYFPGK"
     misc_feature    complement(176569..>176778)
                     /locus_tag="CP0215"
                     /note="Peptidoglycan recognition proteins (PGRPs) are
                     pattern recognition receptors that bind, and in certain
                     cases, hydrolyze peptidoglycans (PGNs) of bacterial cell
                     walls. PGRPs have been divided into three classes: short
                     PGRPs (PGRP-S), that are small (20...; Region: PGRP;
                     cl02712"
                     /db_xref="CDD:413448"
     gene            complement(176810..177061)
                     /locus_tag="CP0216"
                     /db_xref="GeneID:1238221"
     CDS             complement(176810..177061)
                     /locus_tag="CP0216"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858349.1"
                     /db_xref="GeneID:1238221"
                     /translation="MEPVYVILNALLDSGRFTRKLILLGLSGTFSYIFGSIVATLGMG
                     LVVDYLGWGATFIVLILSAVFAIIFTLMSRERSLEFEKE"
     misc_feature    complement(176840..>176989)
                     /locus_tag="CP0216"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:421695"
     gene            177513..177797
                     /locus_tag="CP0217"
                     /db_xref="GeneID:1238062"
     CDS             177513..177797
                     /locus_tag="CP0217"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858350.1"
                     /db_xref="GeneID:1238062"
                     /translation="MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQA
                     LSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQSWADSLSTDHLLPVPR"
     misc_feature    177546..177677
                     /locus_tag="CP0217"
                     /note="ribbon-helix-helix domain of Shewanella oneidensis
                     type II antitoxin CopA(SO), and similar proteins; Region:
                     RHH_CopAso-like; cd22233"
                     /db_xref="CDD:409023"
     misc_feature    order(177546..177566,177576..177581,177585..177590,
                     177597..177599,177606..177608,177621..177626,
                     177633..177638,177642..177659,177666..177668)
                     /locus_tag="CP0217"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:409023"
     misc_feature    order(177549..177551,177555..177557,177561..177563,
                     177618..177626,177636..177638)
                     /locus_tag="CP0217"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:409023"
     gene            177797..178072
                     /locus_tag="CP0218"
                     /db_xref="GeneID:1238063"
     CDS             177797..178072
                     /locus_tag="CP0218"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858351.1"
                     /db_xref="GeneID:1238063"
                     /translation="MELKWTSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLT
                     HPRMGEQLFQFEPREVRRIFTGEYEIRYELTGQTIYVLRLWHTRENR"
     misc_feature    177803..178066
                     /locus_tag="CP0218"
                     /note="ParE toxin of type II toxin-antitoxin system,
                     parDE; Region: ParE_toxin; pfam05016"
                     /db_xref="CDD:398610"
     gene            178125..178304
                     /locus_tag="CP0219"
                     /db_xref="GeneID:1238251"
     CDS             178125..178304
                     /locus_tag="CP0219"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858352.1"
                     /db_xref="GeneID:1238251"
                     /translation="MLSGQIFCIPLNNLVGDKINYDEITKITARDWRQYRAPGWQITH
                     QKRYCQTLRVMTPTY"
     mobile_element  complement(178283..179050)
                     /mobile_element_type="insertion sequence:IS1"
     gene            complement(178298..178801)
                     /gene="insB"
                     /locus_tag="CP0220"
                     /db_xref="GeneID:1238153"
     CDS             complement(178298..178801)
                     /gene="insB"
                     /locus_tag="CP0220"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 ORF2"
                     /protein_id="NP_858353.1"
                     /db_xref="GeneID:1238153"
                     /translation="MSRQRTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD
                     EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG
                     WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY
                     LNIKHYQ"
     misc_feature    complement(178301..178693)
                     /gene="insB"
                     /locus_tag="CP0220"
                     /note="IS1 transposase; Region: DDE_Tnp_IS1; cl00721"
                     /db_xref="CDD:294470"
     gene            178876..179178
                     /locus_tag="CP0221"
                     /db_xref="GeneID:1238222"
     CDS             178876..179178
                     /locus_tag="CP0221"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 encoded protein"
                     /protein_id="NP_858354.1"
                     /db_xref="GeneID:1238222"
                     /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL
                     KSPSYTKSVSWQHYPAPVSPAAHFLPNGCGAPRQYNGGYGRCCRSCTGPAGETATP"
     gene            179387..179605
                     /locus_tag="CP0222"
                     /db_xref="GeneID:1238223"
     CDS             179387..179605
                     /locus_tag="CP0222"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858355.1"
                     /db_xref="GeneID:1238223"
                     /translation="MSDGYSVYKSLADNHPGITSACCWSHAGRGFANLYKASREPRAG
                     VELRKIAGLYRIEKLIRERPVEKIRQWR"
     misc_feature    <179387..>179602
                     /locus_tag="CP0222"
                     /note="Transposase IS66 family; Region: DDE_Tnp_IS66;
                     pfam03050"
                     /db_xref="CDD:281099"
     gene            179624..180004
                     /locus_tag="CP0223"
                     /db_xref="GeneID:1238169"
     CDS             179624..180004
                     /locus_tag="CP0223"
                     /codon_start=1
                     /transl_table=11
                     /product="ISSfl4 ORF3"
                     /protein_id="NP_858356.1"
                     /db_xref="GeneID:1238169"
                     /translation="MNDLFAWLEEQEPCCPPDGPLNKAINYILNRRDELSCFLGDGAV
                     PLDNNICERAIRPVVMGRKAWLFAGSLMAGNRAAQIMSLLETAKRNGLEPHAWLTDVL
                     TRLPEWPEERLAELLPLEGFTFTG"
     misc_feature    <179624..179938
                     /locus_tag="CP0223"
                     /note="IS66 family transposase; Region: transpos_IS66;
                     NF033517"
                     /db_xref="CDD:411154"
     gene            180540..180758
                     /gene="ccdA"
                     /locus_tag="CP0224"
                     /db_xref="GeneID:1238060"
     CDS             180540..180758
                     /gene="ccdA"
                     /locus_tag="CP0224"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid maintenance protein CcdA"
                     /protein_id="NP_858357.1"
                     /db_xref="GeneID:1238060"
                     /translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
                     QAENQQGMAEIARFIEMNGSFADENRDW"
     misc_feature    180540..180755
                     /gene="ccdA"
                     /locus_tag="CP0224"
                     /note="type II toxin-antitoxin system antitoxin CcdA;
                     Region: PRK13710"
                     /db_xref="CDD:184266"
     gene            180760..181065
                     /gene="ccdB"
                     /locus_tag="CP0225"
                     /db_xref="GeneID:1238059"
     CDS             180760..181065
                     /gene="ccdB"
                     /locus_tag="CP0225"
                     /note="controlled cell death protein; post-segregation
                     toxin; toxin addiction system"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid maintenance protein CcdB"
                     /protein_id="NP_858358.3"
                     /db_xref="GeneID:1238059"
                     /translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
                     KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
     misc_feature    180760..181062
                     /gene="ccdB"
                     /locus_tag="CP0225"
                     /note="type II toxin-antitoxin system toxin CcdB; Region:
                     PRK13708"
                     /db_xref="CDD:184264"
     gene            181458..183095
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /db_xref="GeneID:1238048"
     CDS             181458..183095
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /codon_start=1
                     /transl_table=11
                     /product="invasion plasmid antigen, secreted by the
                     Mxi-Spa secretion machinery"
                     /protein_id="NP_858359.2"
                     /db_xref="GeneID:1238048"
                     /translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
                     EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
                     YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
                     NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
                     HALPALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA
                     FEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADAT
                     ESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRT
                     LHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEF
                     TDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAER
                     EAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS"
     misc_feature    181476..181601
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="Type III secretion system leucine rich repeat
                     protein; Region: TTSSLRR; pfam12468"
                     /db_xref="CDD:289251"
     misc_feature    181530..183050
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="E3 ubiquitin-protein ligase SlrP; Provisional;
                     Region: PRK15370"
                     /db_xref="CDD:185268"
     misc_feature    181683..181742
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="Leucine-rich repeats, bacterial type; Region:
                     LRR_BAC; smart00364"
                     /db_xref="CDD:214639"
     misc_feature    181692..181751
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    181752..181811
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    181932..182003
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    182004..182072
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    182073..182138
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     misc_feature    182244..182870
                     /gene="ipaH9.8"
                     /locus_tag="CP0226"
                     /note="C-terminal novel E3 ligase, LRR-interacting;
                     Region: NEL; pfam14496"
                     /db_xref="CDD:291182"
     gene            183824..184414
                     /gene="ospG"
                     /locus_tag="CP0227"
                     /db_xref="GeneID:1238010"
     CDS             183824..184414
                     /gene="ospG"
                     /locus_tag="CP0227"
                     /codon_start=1
                     /transl_table=11
                     /product="protein OspG"
                     /protein_id="NP_858360.1"
                     /db_xref="GeneID:1238010"
                     /translation="MKITSTIIQTPFPFENNNSHAGIVTEPILGKLIGQGSTAEIFED
                     VNDSSALYKKYDLIGNQYNEILEMAWQESELFNAFYGDEASVVIQYGGDVYLRMLRVP
                     GTPLSDIDTADIPDNIESLYLQLICKLNELSIIHYDLNTGNMLYDKESESLFPIDFRN
                     IYAEYYAATKKDKEIIDRRLQMRTNDFYSLLNRKYL"
     misc_feature    <184109..>184297
                     /gene="ospG"
                     /locus_tag="CP0227"
                     /note="Protein Kinases, catalytic domain; Region:
                     PKc_like; cl21453"
                     /db_xref="CDD:419665"
     gene            complement(184482..184661)
                     /gene="mob9"
                     /locus_tag="CP0228"
                     /db_xref="GeneID:1238224"
     CDS             complement(184482..184661)
                     /gene="mob9"
                     /locus_tag="CP0228"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein"
                     /protein_id="NP_858361.1"
                     /db_xref="GeneID:1238224"
                     /translation="MSLAGNPCVIRLVAQVCMWLKFIIRDRGGFSGGLLLFLPVCCRD
                     RTERILAVHTIKILR"
     mobile_element  185034..186369
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS4"
     gene            185100..186421
                     /locus_tag="CP0230"
                     /pseudo
                     /db_xref="GeneID:3170832"
     misc_feature    185100..186421
                     /locus_tag="CP0230"
                     /note="Similar to Shigella flexneri orf, conserved
                     hypothetical protein ref: NP_085397.1 (439 aa). BLAST with
                     identity of 77% in 438 aa. This CDS contains an in-frame
                     stop codon. The sequence has been checked and is believed
                     to be correct."
                     /pseudo
     mobile_element  186370..187678
                     /mobile_element_type="insertion sequence:IS629"
     gene            186424..186753
                     /locus_tag="CP0231"
                     /db_xref="GeneID:1238113"
     CDS             186424..186753
                     /locus_tag="CP0231"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858364.1"
                     /db_xref="GeneID:1238113"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWGLRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAE
                     FDRLWKK"
     misc_feature    186424..186687
                     /locus_tag="CP0231"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:304362"
     misc_feature    186427..186750
                     /locus_tag="CP0231"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     gene            186968..187636
                     /locus_tag="CP0232"
                     /db_xref="GeneID:1238070"
     CDS             186968..187636
                     /locus_tag="CP0232"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF2"
                     /protein_id="NP_858365.1"
                     /db_xref="GeneID:1238070"
                     /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRMTISRKAVAAGD
                     RVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
                     ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
                     GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGND
                     DLAA"
     misc_feature    186968..187633
                     /locus_tag="CP0232"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     mobile_element  187957..188285
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS3"
     gene            188108..188326
                     /locus_tag="CP0233"
                     /db_xref="GeneID:1238226"
     CDS             188108..188326
                     /locus_tag="CP0233"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 ORF2"
                     /protein_id="NP_858366.1"
                     /db_xref="GeneID:1238226"
                     /translation="MAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGP
                     NQKWAGDITYLRTDEVRLHPVSTEPHAF"
     misc_feature    <188204..>188278
                     /locus_tag="CP0233"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     gene            complement(188314..191226)
                     /locus_tag="CP0234"
                     /db_xref="GeneID:1238131"
     CDS             complement(188314..191226)
                     /locus_tag="CP0234"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858367.1"
                     /db_xref="GeneID:1238131"
                     /translation="MFSKAFLRKISMFFARRKPAAMKICLYHTLNPDTIPGYKKFAQA
                     IATDNFVQADVRKIDTNLYRARLSIRDRLLFSLYRYHGETICLVLEYIRNHAYNTSRF
                     LRRNVVIDEGRLQQQPVPDPVDIATEALTYINPSHGRFHRLDKMLSFDDDQQALYEHP
                     LPLVIVGSAGSGKTALVLEKMKQAAGDILYLSLSSFLVEKARTLYDASGEGSEVQNID
                     FLSLTEFLETLRIPEGREVTFSAFSDWLPRNRAIAALGAAHTLYEEFRGVIGAVASGN
                     GPLSREAYLSLGIRQSLYGMEDRPTVYVLFERYIAWLKQSHQYDSNLLSHQYLSLATP
                     RYDVIFVDEVQDMTPVQLQLVLKTLRHPGQFLLCGDANQIVHPSFFSWSSLKSLFFRQ
                     QQGNDTTVNILQANYRNGHHVTALANRLLRLKQVRFSAIDRESHHFVRSCGQAEGTIR
                     LLDDREETKQELNAKTSLSNRVAVIVMHPEQKAQARCWFSTPLVFSVQEVKGLEYETV
                     ILYNIVSAARQAFDDICEGLTPADLEGEARYSRPRDRQDRSAEIYKFFTNALYVALTR
                     AKHNVYLVEQQVEHPLWSLLALTHQEEPLNLQEEISSRDEWQKTAHLLEKQGKQEQAD
                     TIRSRILQTSEMPWQIITAEDARQWKQHILAGTADKTIQLQALEYSLIYSLFPLYNAL
                     YREDFKPTRQPRTKTLQLLELKYFRPYSMNNPVAVLRDIERYGVDHRSPFNLTPLMSA
                     ARAGNIALVQLLLERGADPLLTGNDGLAAYHQVLSAAVSTPRYAQQKSAQLYTLLKPE
                     SLSLQVEGRLIKLDNRQMAMFLVILMQALFHTHLGSALFFSEAFSAARLAECVVHLPE
                     ALLPERRKRRSYISSQLSQHEVNSKNPYGKKLFLRLNHGQYILNPGLKIRKGDVWRAV
                     YELQSPEDLGHDLQTYLQDMSPELVDMLGGKKGFYERSEKSVGYWVGGIRRAAQKA"
     misc_feature    complement(<189943..>190338)
                     /locus_tag="CP0234"
                     /note="Superfamily I DNA or RNA helicase [Replication,
                     recombination and repair]; Region: UvrD; COG0210"
                     /db_xref="CDD:223288"
     misc_feature    complement(189505..>189726)
                     /locus_tag="CP0234"
                     /note="C-terminal helicase domain of the DEAD-like
                     helicases; Region: DEAD-like_helicase_C; cl38915"
                     /db_xref="CDD:365791"
     misc_feature    complement(order(189529..189531,189715..189717,
                     189721..189723))
                     /locus_tag="CP0234"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350171"
     misc_feature    complement(188938..189033)
                     /locus_tag="CP0234"
                     /note="ANK repeat [structural motif]; Region: ANK repeat"
                     /db_xref="CDD:293786"
     misc_feature    complement(188935..189024)
                     /locus_tag="CP0234"
                     /note="Ankyrin repeat; Region: Ank; pfam00023"
                     /db_xref="CDD:394980"
     gene            191709..192551
                     /gene="shf"
                     /locus_tag="CP0235"
                     /db_xref="GeneID:1238130"
     CDS             191709..192551
                     /gene="shf"
                     /locus_tag="CP0235"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate transport protein"
                     /protein_id="NP_858368.1"
                     /db_xref="GeneID:1238130"
                     /translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQIKWLA
                     ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
                     GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
                     TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
                     FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
                     LPDD"
     misc_feature    191805..192491
                     /gene="shf"
                     /locus_tag="CP0235"
                     /note="Putative catalytic NodB homology domain of a
                     hypothetical protein Ecf1 from Escherichia coli and
                     similar proteins; Region: CE4_Ecf1_like_5s; cd10969"
                     /db_xref="CDD:213026"
     gene            192554..193642
                     /gene="rfbU"
                     /locus_tag="CP0236"
                     /db_xref="GeneID:1238129"
     CDS             192554..193642
                     /gene="rfbU"
                     /locus_tag="CP0236"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-sugar hydrolase"
                     /protein_id="NP_858369.1"
                     /db_xref="GeneID:1238129"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTR
                     KHPFRIIRQKTYLTRKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
                     QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
                     ARQAKQDIEERFDINKTALKILTLAKHK"
     misc_feature    192560..193627
                     /gene="rfbU"
                     /locus_tag="CP0236"
                     /note="phosphatidyl-myo-inositol mannosyltransferase;
                     Region: GT4_PimA-like; cd03801"
                     /db_xref="CDD:340831"
     gene            193647..194597
                     /gene="virK"
                     /locus_tag="CP0237"
                     /db_xref="GeneID:1238020"
     CDS             193647..194597
                     /gene="virK"
                     /locus_tag="CP0237"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858370.1"
                     /db_xref="GeneID:1238020"
                     /translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
                     VASIRYYYELRSLQCIEDILAIQPTLPARIHRPYLHKGGRAWSRGQYILEHYRFVQNL
                     PEKYSEFLFPQKSVSLVQFIGKDGEDFDIQCSPSGFDREGELMLSLFFNKIVIARLTF
                     SVILTQNGHTAFIGGLQGAPKNTGPDIIRCATRACYGLFPKRIIFEAFCALMKACNVS
                     ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYKLPTQVVRKPLSN
                     IASKKRSEYRKRYALLDYIHETAIRSLDAYPVNSEHYDLN"
     misc_feature    193722..194540
                     /gene="virK"
                     /locus_tag="CP0237"
                     /note="Protein of unknown function (DUF535); Region:
                     DUF535; pfam04393"
                     /db_xref="CDD:282275"
     gene            194662..195606
                     /gene="msbB2"
                     /locus_tag="CP0238"
                     /db_xref="GeneID:1238039"
     CDS             194662..195606
                     /gene="msbB2"
                     /locus_tag="CP0238"
                     /note="Transfers myristate or laurate, activated on ACP,
                     to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
                     acyltransferase"
                     /protein_id="NP_858371.1"
                     /db_xref="GeneID:1238039"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWFTWFVLGMIAGISMFPPSFRDP
                     VLAKIGRWVGRLSRKARRRATINLSLCFPEKSDTEREIIVDNMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRHNNRNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
                     ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
     misc_feature    194662..195603
                     /gene="msbB2"
                     /locus_tag="CP0238"
                     /note="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
                     acyltransferase; Validated; Region: PRK08943"
                     /db_xref="CDD:236355"
     misc_feature    order(195070..195072,195079..195081,195085..195087,
                     195136..195147,195283..195291)
                     /gene="msbB2"
                     /locus_tag="CP0238"
                     /note="putative acyl-acceptor binding pocket [active]"
                     /db_xref="CDD:153246"
     mobile_element  complement(195737..196684)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS630"
     gene            complement(195760..196716)
                     /locus_tag="CP0239"
                     /db_xref="GeneID:1238086"
     CDS             complement(195760..196716)
                     /locus_tag="CP0239"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 orf"
                     /protein_id="NP_858372.1"
                     /db_xref="GeneID:1238086"
                     /translation="MVVSAIASTPQLHRGDRVSDVARTLCCARSSVGRWINWFTQSGV
                     EGLKSLPAGRARRWPFEHICTLLRELVKHSPGDFGYQRSRWSTELLAIKINEITGCQL
                     NAGTVRRWLPSVGIVWRRAAPTLRIRDPHKDEKMAAIHKALDECSAEHPVFYEDEVDI
                     HLHPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKSSALFISLL
                     KRLKATYRRAKTITLIVDNYIIHKSRETQSWLKENPKFRGIYQPVYSPWVNHVERLWQ
                     ALHDTITRNHQCRSMWQLLKKVRHFMETVSPFPGGKHGLAKV"
     misc_feature    complement(196573..>196683)
                     /locus_tag="CP0239"
                     /note="Homeodomain-like domain; Region: HTH_23; pfam13384"
                     /db_xref="CDD:290120"
     misc_feature    complement(196384..196626)
                     /locus_tag="CP0239"
                     /note="Homeodomain-like domain; Region: HTH_32; pfam13565"
                     /db_xref="CDD:290298"
     misc_feature    complement(195892..196266)
                     /locus_tag="CP0239"
                     /note="Integrase core domain; Region: rve; cl21549"
                     /db_xref="CDD:304425"
     mobile_element  196685..197948
                     /mobile_element_type="insertion sequence:IS600"
     gene            complement(196725..197546)
                     /locus_tag="CP0240"
                     /pseudo
                     /db_xref="GeneID:3170834"
     misc_feature    complement(196725..197546)
                     /locus_tag="CP0240"
                     /note="Similar to Shigella flexneri orf, conserved
                     hypothetical protein ref: NP_085323.1 (272 aa). BLAST with
                     identity of 100% in 272 aa. This CDS contains an in-frame
                     stop codon. The sequence has been checked and is believed
                     to be correct."
                     /pseudo
     gene            complement(197582..197884)
                     /locus_tag="CP0242"
                     /db_xref="GeneID:1238160"
     CDS             complement(197582..197884)
                     /locus_tag="CP0242"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF1"
                     /protein_id="NP_858375.1"
                     /db_xref="GeneID:1238160"
                     /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQW
                     VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR"
     misc_feature    complement(197660..197878)
                     /locus_tag="CP0242"
                     /note="Transposase; Region: HTH_Tnp_1; pfam01527"
                     /db_xref="CDD:307599"
     gene            197923..198108
                     /gene="traD"
                     /locus_tag="CP0243"
                     /db_xref="GeneID:1238229"
     CDS             197923..198108
                     /gene="traD"
                     /locus_tag="CP0243"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA transport protein"
                     /protein_id="NP_858376.1"
                     /db_xref="GeneID:1238229"
                     /translation="MSVKLRLPQISESGEVVDMAAYEAWQQENHPDTWQQMQRREEVN
                     INVHRERGEDVEPGDDF"
     misc_feature    <197944..198105
                     /gene="traD"
                     /locus_tag="CP0243"
                     /note="conjugal transfer protein TraD; Provisional;
                     Region: PRK13700"
                     /db_xref="CDD:184256"
     gene            complement(198117..198515)
                     /gene="mvpA"
                     /locus_tag="CP0245"
                     /db_xref="GeneID:1238038"
     CDS             complement(198117..198515)
                     /gene="mvpA"
                     /locus_tag="CP0245"
                     /note="stability determinant protein"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid maintenance protein"
                     /protein_id="NP_858378.1"
                     /db_xref="GeneID:1238038"
                     /translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGKMCISSVTLMELI
                     YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVGPFDQMIA
                     GHARSRGLIIVTNNTREFERVGGLRTEDWS"
     misc_feature    complement(198120..198515)
                     /gene="mvpA"
                     /locus_tag="CP0245"
                     /note="tRNA(fMet)-specific endonuclease VapC; Region:
                     PRK13725"
                     /db_xref="CDD:184277"
     gene            complement(198515..198742)
                     /gene="mvpT"
                     /locus_tag="CP0246"
                     /db_xref="GeneID:1238037"
     CDS             complement(198515..198742)
                     /gene="mvpT"
                     /locus_tag="CP0246"
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid maintenance protein"
                     /protein_id="NP_858379.1"
                     /db_xref="GeneID:1238037"
                     /translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
                     ETWDEWFDGHSVSTDFMDNREQPGMQERESF"
     misc_feature    complement(198518..198742)
                     /gene="mvpT"
                     /locus_tag="CP0246"
                     /note="Virulence-associated protein VagC (function
                     unknown) [Function unknown]; Region: VagC; COG4456"
                     /db_xref="CDD:226863"
     gene            198803..199195
                     /locus_tag="CP0247"
                     /db_xref="GeneID:1238230"
     CDS             198803..199195
                     /locus_tag="CP0247"
                     /codon_start=1
                     /transl_table=11
                     /product="oriT nicking and unwinding protein"
                     /protein_id="NP_858380.1"
                     /db_xref="GeneID:1238230"
                     /translation="MSKGYTFMMSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGQG
                     AEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSAPKSISMMAM
                     LGGDKRLIEAHNQAVDFAVRQVEASAST"
     misc_feature    198827..>199192
                     /locus_tag="CP0247"
                     /note="conjugal transfer nickase/helicase TraI;
                     Provisional; Region: PRK13709"
                     /db_xref="CDD:237478"
     gene            199216..200580
                     /locus_tag="CP0248"
                     /db_xref="GeneID:1238231"
     CDS             199216..200580
                     /locus_tag="CP0248"
                     /codon_start=1
                     /transl_table=11
                     /product="oriT nicking and unwinding protein"
                     /protein_id="NP_858381.1"
                     /db_xref="GeneID:1238231"
                     /translation="MLTGNLVMALFNHDTSRDQEPQLHTHAVVTNVTQYNGEWKTLSS
                     DKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFS
                     GRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD
                     AAEQRAYTRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPEN
                     GVIERARAGIDEAISREQLIPLDREKGLFTFGIHMLDELSVRALSRDIMKQNRVTVHL
                     EKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIA
                     ADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGA
                     ARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVGWPEI
                     LRPA"
     misc_feature    199216..>200565
                     /locus_tag="CP0248"
                     /note="conjugal transfer nickase/helicase TraI;
                     Provisional; Region: PRK14712"
                     /db_xref="CDD:237796"
     gene            200577..204077
                     /locus_tag="CP0249"
                     /db_xref="GeneID:1238121"
     CDS             200577..204077
                     /locus_tag="CP0249"
                     /note="cleaves origin of transfer and unwinds; oriT
                     relaxase"
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer nickase/helicase TraI"
                     /protein_id="NP_858382.1"
                     /db_xref="GeneID:1238121"
                     /translation="MKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTAL
                     SPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQV
                     VRISSLDSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVP
                     GRAEPATLPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARS
                     GRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAISLQKAGLHTPAQQ
                     AIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLLYVDVAK
                     GYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAATRMILE
                     TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDA
                     QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASG
                     DTDQLQAIAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVERALSGLE
                     RVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVR
                     DYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKVQVMVPVLNTANIRDG
                     ELRRLSTWENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVT
                     LYTPDTIRVGTGDRIRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQE
                     RAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQHVQVY
                     TDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQA
                     GLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGR
                     VKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAIT
                     GGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPD
                     LPDGKTEQAVREIAGQERDRAAITEREAALPESVLREPQRVREAVREVARENLLQERL
                     QQMERDMVRDLQKEKTPGGD"
     misc_feature    <200577..204074
                     /locus_tag="CP0249"
                     /note="conjugal transfer nickase/helicase TraI;
                     Provisional; Region: PRK14712"
                     /db_xref="CDD:237796"
     gene            204097..204843
                     /gene="traX"
                     /locus_tag="CP0250"
                     /db_xref="GeneID:3170840"
     CDS             204097..204843
                     /gene="traX"
                     /locus_tag="CP0250"
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer pilus acetylation protein
                     TraX"
                     /protein_id="NP_858383.2"
                     /db_xref="GeneID:3170840"
                     /translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
                     VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
                     AYYLAGFPWYEGNILFAFAVAAQVLTWCTTRSGWRTAAAILLMALWGPLSGTSYGIAG
                     LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
                     AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
     misc_feature    204133..204840
                     /gene="traX"
                     /locus_tag="CP0250"
                     /note="conjugal transfer pilus acetylation protein TraX;
                     Provisional; Region: PRK13706"
                     /db_xref="CDD:184262"
     gene            204898..205458
                     /gene="finO"
                     /locus_tag="CP0251"
                     /db_xref="GeneID:1238058"
     CDS             204898..205458
                     /gene="finO"
                     /locus_tag="CP0251"
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer fertility inhibition protein
                     FinO"
                     /protein_id="NP_858384.1"
                     /db_xref="GeneID:1238058"
                     /translation="MTEQKRPVLTLKRKTEGTAPVRSRKTIINVTTPPKWKVKKQKLA
                     EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRD
                     VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
                     YAGARLAKIRRQNRIKAELQAVLDEK"
     misc_feature    204898..205452
                     /gene="finO"
                     /locus_tag="CP0251"
                     /note="fertility inhibition protein FinO; Region:
                     PRK13754"
                     /db_xref="CDD:184304"
     gene            205589..205801
                     /gene="yigA"
                     /locus_tag="CP0252"
                     /db_xref="GeneID:1238102"
     CDS             205589..205801
                     /gene="yigA"
                     /locus_tag="CP0252"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858385.1"
                     /db_xref="GeneID:1238102"
                     /translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
                     VAPRTDWQQFARKRAEHCHRRCRGRV"
     gene            205985..206287
                     /gene="yigB"
                     /locus_tag="CP0253"
                     /db_xref="GeneID:1238232"
     CDS             205985..206287
                     /gene="yigB"
                     /locus_tag="CP0253"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858386.1"
                     /db_xref="GeneID:1238232"
                     /translation="MLHYSGGLKYRWHLSDMENNMRKYIPLALFIFSWPVLSADIHGR
                     VVRVLDGDTIEVMDSLKAVRIRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTY"
     misc_feature    206099..>206284
                     /gene="yigB"
                     /locus_tag="CP0253"
                     /note="Staphylococcal nuclease homologues; Region: SNc;
                     cl29560"
                     /db_xref="CDD:356436"
     mobile_element  206285..207548
                     /mobile_element_type="insertion sequence:IS600"
     gene            complement(206328..207146)
                     /locus_tag="CP0254"
                     /db_xref="GeneID:1238157"
     CDS             complement(206328..207146)
                     /locus_tag="CP0254"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF2"
                     /protein_id="NP_858387.1"
                     /db_xref="GeneID:1238157"
                     /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET
                     YGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ
                     TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
                     ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL
                     KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA"
     misc_feature    complement(206346..207134)
                     /locus_tag="CP0254"
                     /note="HTH-like domain; Region: HTH_21; cl26233"
                     /db_xref="CDD:331054"
     gene            complement(207182..207484)
                     /locus_tag="CP0255"
                     /db_xref="GeneID:1238155"
     CDS             complement(207182..207484)
                     /locus_tag="CP0255"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF1"
                     /protein_id="NP_858388.1"
                     /db_xref="GeneID:1238155"
                     /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW
                     VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR"
     misc_feature    complement(<207224..207454)
                     /locus_tag="CP0255"
                     /note="IS3 family transposase; Region: transpos_IS3;
                     NF033516"
                     /db_xref="CDD:411153"
     gene            207606..207773
                     /locus_tag="CP0256"
                     /db_xref="GeneID:1238233"
     CDS             207606..207773
                     /locus_tag="CP0256"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858389.1"
                     /db_xref="GeneID:1238233"
                     /translation="MNINQFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDAD
                     PVPPWIWRHRK"
     misc_feature    <207606..207731
                     /locus_tag="CP0256"
                     /note="Staphylococcal nuclease homologues. SNase
                     homologues are found in bacteria, archaea, and eukaryotes.
                     They contain no disufide bonds; Region: SNc; cl00140"
                     /db_xref="CDD:294094"
     gene            208067..208657
                     /gene="yihA"
                     /locus_tag="CP0257"
                     /db_xref="GeneID:1238128"
     CDS             208067..208657
                     /gene="yihA"
                     /locus_tag="CP0257"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858390.1"
                     /db_xref="GeneID:1238128"
                     /translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
                     AERILSSGEYWQRQKTLLTEREVSFMKGLFRIVDMKRWYLCPQVRVADIVQLNGNIRP
                     RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
                     AGIPLLRSHDARKLLQMTGEWLNTTGADQQSPEHRS"
     misc_feature    208238..208567
                     /gene="yihA"
                     /locus_tag="CP0257"
                     /note="PDDEXK family nucleases; Region:
                     PDDEXK_nuclease-like; cl40440"
                     /db_xref="CDD:424071"
     gene            208897..209157
                     /gene="repB"
                     /locus_tag="CP0258"
                     /db_xref="GeneID:1238260"
     CDS             208897..209157
                     /gene="repB"
                     /locus_tag="CP0258"
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="NP_858391.1"
                     /db_xref="GeneID:1238260"
                     /translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
                     KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
     misc_feature    208897..209151
                     /gene="repB"
                     /locus_tag="CP0258"
                     /note="replication regulatory protein RepA; Region:
                     PRK13702"
                     /db_xref="CDD:184258"
     gene            209381..209455
                     /gene="tap"
                     /locus_tag="CP0259"
                     /db_xref="GeneID:1238261"
     CDS             209381..209455
                     /gene="tap"
                     /locus_tag="CP0259"
                     /note="RepA6"
                     /codon_start=1
                     /transl_table=11
                     /product="leader peptide RepL"
                     /protein_id="NP_858392.1"
                     /db_xref="GeneID:1238261"
                     /translation="MPGKVQDFFLCSLLLRIVSAGWCD"
     misc_feature    209381..209452
                     /gene="tap"
                     /locus_tag="CP0259"
                     /note="RepA leader peptide Tap; Region: PRK13716"
                     /db_xref="CDD:106657"
     gene            209448..210305
                     /gene="repA"
                     /locus_tag="CP0260"
                     /db_xref="GeneID:1238006"
     CDS             209448..210305
                     /gene="repA"
                     /locus_tag="CP0260"
                     /note="RepA"
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="NP_858393.2"
                     /db_xref="GeneID:1238006"
                     /translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
                     FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
                     LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
                     SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
                     RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
                     YSRLATASP"
     misc_feature    209448..210302
                     /gene="repA"
                     /locus_tag="CP0260"
                     /note="replication protein; Provisional; Region: PRK13750"
                     /db_xref="CDD:184300"
     gene            211006..211197
                     /locus_tag="CP0261"
                     /db_xref="GeneID:1238252"
     CDS             211006..211197
                     /locus_tag="CP0261"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858394.1"
                     /db_xref="GeneID:1238252"
                     /translation="MAENGYGLAGLGMGKVKSVNQYRLTPGFGGFTPVSHVTTACRLP
                     CRWRGIRIIQAAFNAFAKV"
     mobile_element  complement(211241..211531)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS91"
     gene            complement(211427..212623)
                     /locus_tag="CP0262"
                     /db_xref="GeneID:1238144"
     CDS             complement(211427..212623)
                     /locus_tag="CP0262"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858395.1"
                     /db_xref="GeneID:1238144"
                     /translation="MLSAFTPRPLKRLFTTNQCWTSFLDAGGLRDIEVEAVTKMLACG
                     TRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWVHL
                     VFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHP
                     HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITT
                     ESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLS
                     FRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRA
                     LGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGSQMRFTGLKRGYRLAEQVLMHEPLA
                     RMRWCG"
     misc_feature    complement(212261..212566)
                     /locus_tag="CP0262"
                     /note="Transposase zinc-binding domain; Region:
                     Zn_Tnp_IS91; pfam14319"
                     /db_xref="CDD:291017"
     misc_feature    complement(211658..212194)
                     /locus_tag="CP0262"
                     /note="Putative transposase; Region: Y2_Tnp; pfam04986"
                     /db_xref="CDD:282795"
     mobile_element  complement(211527..212940)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS1294"
     gene            complement(212633..212821)
                     /locus_tag="CP0263"
                     /db_xref="GeneID:1238253"
     CDS             complement(212633..212821)
                     /locus_tag="CP0263"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1294 transposase"
                     /protein_id="NP_858396.1"
                     /db_xref="GeneID:1238253"
                     /translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
     gene            212967..213134
                     /locus_tag="CP0264"
                     /db_xref="GeneID:1238234"
     CDS             212967..213134
                     /locus_tag="CP0264"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="NP_858397.1"
                     /db_xref="GeneID:1238234"
                     /translation="MDEKKLKALAAELAKGLKTEADLNQFSRMQTKLTVETVLNAELT
                     DHLGHEKSYIR"
     misc_feature    212994..>213119
                     /locus_tag="CP0264"
                     /note="Transposase, Mutator family; Region:
                     Transposase_mut; cl27632"
                     /db_xref="CDD:421529"
     gene            complement(213152..214879)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /db_xref="GeneID:1238052"
     CDS             complement(213152..214879)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /codon_start=1
                     /transl_table=11
                     /product="invasion plasmid antigen, secreted by the
                     Mxi-Spa secretion machinery"
                     /protein_id="NP_858398.2"
                     /db_xref="GeneID:1238052"
                     /translation="MIKSTNIQAIGSGIMHQINNVYSLTPLSLPMELTPSCNEFYLKT
                     WSEWEKNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLALANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPQIFFSMGNSA
                     TISAPEHSLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTS
                     GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGL
                     FDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAV
                     KEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEE
                     QKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRL
                     SENGSNHIA"
     misc_feature    complement(214691..214861)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /note="Type III secretion system leucine rich repeat
                     protein; Region: TTSSLRR; pfam12468"
                     /db_xref="CDD:403610"
     misc_feature    complement(213194..214759)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /note="type III secretion system effector E3 ubiquitin
                     transferase SlrP; Region: PRK15370"
                     /db_xref="CDD:185268"
     misc_feature    complement(214604..214657)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    complement(214544..214603)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    complement(214487..214543)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    complement(214424..214483)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275378"
     misc_feature    complement(214232..214303)
                     /gene="ipaH1.4"
                     /locus_tag="CP0265"
                     /note="leucine-rich repeat [structural motif]; Region:
                     leucine-rich repeat"
                     /db_xref="CDD:275380"
     gene            complement(215268..215534)
                     /gene="ospE1"
                     /locus_tag="CP0265a"
                     /db_xref="GeneID:5563319"
     CDS             complement(215268..215534)
                     /gene="ospE1"
                     /locus_tag="CP0265a"
                     /note="secreted by the Mxi-Spa secretion machinery"
                     /codon_start=1
                     /transl_table=11
                     /product="OspE1"
                     /protein_id="YP_001449237.1"
                     /db_xref="GeneID:5563319"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPAASRTKTLKFTATEMQWLTKINEAGIDEKQSQRYSDF"
     mobile_element  complement(215635..215761)
                     /note="partial"
                     /mobile_element_type="insertion sequence:iso-IS1"
     gene            complement(216182..216334)
                     /locus_tag="CP0266"
                     /db_xref="GeneID:3170839"
     CDS             complement(216182..216334)
                     /locus_tag="CP0266"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="NP_858399.2"
                     /db_xref="GeneID:3170839"
                     /translation="MSVKLRLPQLSSGEYLPGSLQDKILSDDCLEKEQMVVSAIASTP
                     QASYHI"
     mobile_element  complement(216309..216649)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS600"
     gene            216373..216756
                     /locus_tag="CP0267"
                     /db_xref="GeneID:1238091"
     CDS             216373..216756
                     /locus_tag="CP0267"
                     /codon_start=1
                     /transl_table=11
                     /product="IS600 ORF1"
                     /protein_id="NP_858400.1"
                     /db_xref="GeneID:1238091"
                     /translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
                     VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFARNPRPIQQCF
                     KFTLLAFSHLFLGNTGECHDGALSE"
     misc_feature    216373..216696
                     /locus_tag="CP0267"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     misc_feature    216379..216597
                     /locus_tag="CP0267"
                     /note="Transposase; Region: HTH_Tnp_1; pfam01527"
                     /db_xref="CDD:279821"
     mobile_element  216754..218002
                     /mobile_element_type="insertion sequence:IS911"
     gene            216790..217128
                     /locus_tag="CP0268"
                     /db_xref="GeneID:1238085"
     CDS             216790..217128
                     /locus_tag="CP0268"
                     /codon_start=1
                     /transl_table=11
                     /product="IS911 ORF1"
                     /protein_id="NP_858401.1"
                     /db_xref="GeneID:1238085"
                     /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM
                     DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL
                     LMSDSLNSSR"
     misc_feature    216823..217119
                     /locus_tag="CP0268"
                     /note="Transposase and inactivated derivatives [Mobilome:
                     prophages, transposons]; Region: InsE; COG2963"
                     /db_xref="CDD:225511"
     misc_feature    216829..217050
                     /locus_tag="CP0268"
                     /note="Helix-turn-helix domains; Region: HTH; cl21459"
                     /db_xref="CDD:304362"
     gene            217155..217994
                     /locus_tag="CP0269"
                     /db_xref="GeneID:1238152"
     CDS             217155..217994
                     /locus_tag="CP0269"
                     /codon_start=1
                     /transl_table=11
                     /product="IS911 ORF2"
                     /protein_id="NP_858402.1"
                     /db_xref="GeneID:1238152"
                     /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH
                     GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE
                     RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE
                     MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS
                     LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA
                     SFC"
     misc_feature    217176..217985
                     /locus_tag="CP0269"
                     /note="putative transposase OrfB; Reviewed; Region:
                     PHA02517"
                     /db_xref="CDD:222853"
     mobile_element  218765..218945
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS3"
     gene            218767..218919
                     /locus_tag="CP0270"
                     /db_xref="GeneID:1238235"
     CDS             218767..218919
                     /locus_tag="CP0270"
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 ORF2"
                     /protein_id="NP_858403.1"
                     /db_xref="GeneID:1238235"
                     /translation="MECLHGEHFIYREIVRATVFNYIECNYNRWRRHRWCGGLSPEQF
                     ENQNLA"
     misc_feature    218770..218913
                     /locus_tag="CP0270"
                     /note="Integrase core domain; Region: rve_3; cl22978"
                     /db_xref="CDD:328977"
     gene            220300..221247
                     /gene="icsP/sopA"
                     /locus_tag="CP0271"
                     /db_xref="GeneID:1238162"
     CDS             220300..221247
                     /gene="icsP/sopA"
                     /locus_tag="CP0271"
                     /note="outer membrane protease; involved in virulence in
                     many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in
                     Escherichia coli OmpT can degrade antimicrobial peptides;
                     in Yersinia Pla activates plasminogen during infection; in
                     Shigella flexneria SopA cleaves the autotransporter IcsA"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protease"
                     /protein_id="NP_858404.2"
                     /db_xref="GeneID:1238162"
                     /translation="MKLKFFVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
                     TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
                     DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
                     FNAMGGSYIYSENGGSRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
                     KYSGWVLSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
                     KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
     misc_feature    220300..221244
                     /gene="icsP/sopA"
                     /locus_tag="CP0271"
                     /note="omptin family outer membrane protease; Region:
                     PRK10993"
                     /db_xref="CDD:236813"
     gene            complement(221216..221383)
                     /locus_tag="CP0272"
                     /db_xref="GeneID:1238236"
     CDS             complement(221216..221383)
                     /locus_tag="CP0272"
                     /codon_start=1
                     /transl_table=11
                     /product="IS629 ORF1"
                     /protein_id="NP_858405.1"
                     /db_xref="GeneID:1238236"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAIFSHENVINSVN
                     QFKKYTLYLRK"
     misc_feature    complement(<221252..>221371)
                     /locus_tag="CP0272"
                     /note="EAL domain. This domain is found in diverse
                     bacterial signaling proteins. It is called EAL after its
                     conserved residues and is also known as domain of unknown
                     function 2 (DUF2). The EAL domain has been shown to
                     stimulate degradation of a second...; Region: EAL;
                     cl29561"
                     /db_xref="CDD:421861"
     mobile_element  complement(221284..221437)
                     /note="partial"
                     /mobile_element_type="insertion sequence:IS629"
CONTIG      join(AF386526.1:1..221618)
//
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