LOCUS NC_004851 221618 bp DNA circular CON 03-AUG-2016
DEFINITION Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence.
ACCESSION NC_004851
VERSION NC_004851.1
DBLINK BioProject: PRJNA62907
Assembly: GCF_000006925.2
KEYWORDS RefSeq.
SOURCE Shigella flexneri 2a str. 301
ORGANISM Shigella flexneri 2a str. 301
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE 1 (bases 1 to 221618)
AUTHORS Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H.,
Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D.,
Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K.,
Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y.,
Hou,Y. and Yu,J.
TITLE Genome sequence of Shigella flexneri 2a: insights into
pathogenicity through comparison with genomes of Escherichia coli
K12 and O157
JOURNAL Nucleic Acids Res. 30 (20), 4432-4441 (2002)
PUBMED 12384590
REFERENCE 2 (bases 1 to 221618)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2003) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 221618)
AUTHORS Jin,Q., Zhang,J.Y., Liu,H., Yang,J., Yang,F., Zhang,X.B.,
Wang,J.H., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y.,
Zhao,A.L., Gao,Y.S., Zhu,J.P., Kan,B., Chen,S.X., Yao,Z.J.,
He,B.K., Chen,R.S., Ma,D.L., Yuan,Z.H., Xu,J.G., Wang,Y., Shen,Y.,
Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D.
TITLE Direct Submission
JOURNAL Submitted (27-MAY-2001) State Key Laboratory for Moleclular
Virology and Genetic Engineering, Microbial Genome Center of
Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
Beijing 100176, P.R.China
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AF386526.
RefSeq Category: Reference Genome
CLI: Clinical Isolate
FGS: First Genome sequenced
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..221618
/organism="Shigella flexneri 2a str. 301"
/mol_type="genomic DNA"
/strain="301"
/serotype="2a"
/db_xref="taxon:198214"
/plasmid="pCP301"
mobile_element 184..564
/note="partial"
/mobile_element_type="insertion sequence:IS2"
gene complement(191..493)
/locus_tag="CP0001"
/db_xref="GeneID:1238176"
CDS complement(191..493)
/locus_tag="CP0001"
/codon_start=1
/transl_table=11
/product="IS2 ORF2"
/protein_id="NP_858134.1"
/db_xref="GeneID:1238176"
/translation="MVHATELMKHASSPGCWDFVEPKNTAVRSPESNRIAKSFVKTIK
CDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALDYRSPREYLRQRANDNRCLEI"
misc_feature complement(194..>436)
/locus_tag="CP0001"
/note="IS2 transposase TnpB; Reviewed; Region: PRK09409"
/db_xref="CDD:181829"
gene 485..949
/locus_tag="CP0002"
/db_xref="GeneID:1238177"
CDS 485..949
/locus_tag="CP0002"
/codon_start=1
/transl_table=11
/product="resolvase"
/protein_id="NP_858135.1"
/db_xref="GeneID:1238177"
/translation="MNHYPSVTSLETPEARCRSGVPPLPACRQRESIYGLIELFIQIV
HRLSVRSERRLVKTLLADFQRVHGKTALLFRIAEAALNNPDGLVKEVVYHLHIVEPDR
SGKRSSSYLAQLRDVSARGDAVKNGRTLPEQDSGLPALVSDPGLPRMISTVL"
gene 1176..2042
/gene="ospB"
/locus_tag="CP0003"
/db_xref="GeneID:1238026"
CDS 1176..2042
/gene="ospB"
/locus_tag="CP0003"
/codon_start=1
/transl_table=11
/product="OspB protein"
/protein_id="NP_858136.1"
/db_xref="GeneID:1238026"
/translation="MNLDGVRPYCRIVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
QKKTFIINKELD"
gene 2371..3111
/gene="phoN2/apy"
/locus_tag="CP0004"
/db_xref="GeneID:1238061"
CDS 2371..3111
/gene="phoN2/apy"
/locus_tag="CP0004"
/codon_start=1
/transl_table=11
/product="PhoN2 (Apy), periplasmic phosphatase, apyrase,
ATP diphosphohydrolase"
/protein_id="NP_858137.1"
/db_xref="GeneID:1238061"
/translation="MKTKNFLLFCIATNMIFIPSANALKAEGFLTQQTSPDSLSILPP
PPAENSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDEKMAITGSYPSGHA
SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
NTPEFTKSLSEAKKEFEELNTPTNELTP"
misc_feature 2386..3075
/gene="phoN2/apy"
/locus_tag="CP0004"
/note="PAP2, bacterial acid phosphatase or class A
non-specific acid phosphatases. These enzymes catalyze
phosphomonoester hydrolysis, with optimal activity in low
pH conditions. They are secreted into the periplasmic
space, and their physiological role remains...; Region:
PAP2_acid_phosphatase; cd03397"
/db_xref="CDD:239491"
misc_feature order(2740..2742,2761..2763,2839..2847,2944..2946,
2962..2964,2974..2976)
/gene="phoN2/apy"
/locus_tag="CP0004"
/note="active site"
/db_xref="CDD:239491"
mobile_element 3218..3347
/note="partial"
/mobile_element_type="insertion sequence:IS629"
gene complement(3471..4745)
/gene="ospC4"
/locus_tag="CP0005"
/db_xref="GeneID:1238015"
CDS complement(3471..4745)
/gene="ospC4"
/locus_tag="CP0005"
/note="probably secreted by the Mxi-Spa secretion
machinery; function unknown"
/codon_start=1
/transl_table=11
/product="OspC4"
/protein_id="NP_858138.1"
/db_xref="GeneID:1238015"
/translation="MKNFLRKSIAAQSYSKMFSQGTSFKSLNLSLEAPSGARSSFRSL
EHLDKVSRHYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNIILNIKSFD
KIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFGANAYII
DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
NTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSK
FNFTKQDVAEMEKMKNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKAN
SGDTMLDNAMKSKDSKMIDFFIKKWSGIRQTI"
misc_feature complement(3501..4349)
/gene="ospC4"
/locus_tag="CP0005"
/note="Shigella flexneri OspC protein; Region:
Shigella_OspC; pfam06128"
/db_xref="CDD:283728"
gene complement(5264..5665)
/locus_tag="CP0006"
/db_xref="GeneID:1238237"
CDS complement(5264..5665)
/locus_tag="CP0006"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858139.2"
/db_xref="GeneID:1238237"
/translation="MAETLGEQYDPVLPSSLRQSSARKPLPASLPRAPRVIRPEEECC
PACGGELSPLGCDVSEQLELISSAFKVIEKQRPKLACRRCDHIVQAPVPSKPIARSYA
GAGLLAHVVTGKYADHLPLYRQSDLLFHTAI"
misc_feature complement(<5282..5614)
/locus_tag="CP0006"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
gene complement(5745..6095)
/locus_tag="CP0007"
/db_xref="GeneID:1238178"
CDS complement(5745..6095)
/locus_tag="CP0007"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858140.1"
/db_xref="GeneID:1238178"
/translation="MVVSAIASTPHLVYIRTRETYGTRRLQTELADNGIIVGRDRLAG
LRKELRLHCKQKRKFRATTNSDHNLPVTPNLLNQNFTPTAPNQVWVADSVVQAFRNQP
TEGAGRETAAYAVR"
misc_feature complement(<5820..>6059)
/locus_tag="CP0007"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element 5827..6055
/note="partial"
/mobile_element_type="insertion sequence:IS600"
mobile_element 6064..7327
/mobile_element_type="insertion sequence:IS600"
gene complement(6107..6925)
/locus_tag="CP0008"
/db_xref="GeneID:1238100"
CDS complement(6107..6925)
/locus_tag="CP0008"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858141.1"
/db_xref="GeneID:1238100"
/translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET
YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ
TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL
KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA"
misc_feature complement(6134..>6925)
/locus_tag="CP0008"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
gene complement(7435..9144)
/gene="ospD2"
/locus_tag="CP0009"
/db_xref="GeneID:1238013"
CDS complement(7435..9144)
/gene="ospD2"
/locus_tag="CP0009"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858142.2"
/db_xref="GeneID:1238013"
/translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
IQFKNKTAPYFSEKRNVEVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGYSDIIQVYGKILNMCNLSQETILTL
LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
TNKDGIPGVFVSVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
HFL"
misc_feature complement(8260..9078)
/gene="ospD2"
/locus_tag="CP0009"
/note="ShET2 enterotoxin, N-terminal region; Region:
Toxin_15; pfam07906"
/db_xref="CDD:369588"
misc_feature complement(7663..8451)
/gene="ospD2"
/locus_tag="CP0009"
/note="Ankyrin repeat [Signal transduction mechanisms];
Region: ANKYR; COG0666"
/db_xref="CDD:440430"
gene complement(9576..10295)
/gene="ospF"
/locus_tag="CP0010"
/db_xref="GeneID:1238011"
CDS complement(9576..10295)
/gene="ospF"
/locus_tag="CP0010"
/note="secreted by the Mxi-Spa secretion machinery"
/codon_start=1
/transl_table=11
/product="OspF"
/protein_id="NP_858143.1"
/db_xref="GeneID:1238011"
/translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
QYPAYYFKVASNVPTYSDICQSFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
DGSERQEQMLREEPFYRLMIE"
misc_feature complement(9579..10295)
/gene="ospF"
/locus_tag="CP0010"
/note="type III secretion system effector phosphothreonine
lyase; Region: PRK15245"
/db_xref="CDD:185157"
gene complement(10420..10794)
/locus_tag="CP0011"
/db_xref="GeneID:1238179"
CDS complement(10420..10794)
/locus_tag="CP0011"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858144.1"
/db_xref="GeneID:1238179"
/translation="MDDRIQAGKADMAACADEADEPVLGAERTGKGYLEQTMERGKTQ
RLAEMAAANSDVPMMKNVAKTIGKRLYGILNAMRHGVSNGNAEALNSKIRLLRIKAKG
YRNRERFKLGVMFHYGKLNMAF"
misc_feature complement(10447..>10644)
/locus_tag="CP0011"
/note="ISL3 family transposase; Region: transpos_ISL3;
NF033550"
/db_xref="CDD:468079"
gene complement(10620..10997)
/locus_tag="CP0012"
/db_xref="GeneID:3170835"
CDS complement(10620..10997)
/locus_tag="CP0012"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858145.2"
/db_xref="GeneID:3170835"
/translation="MLNWLSKLRAARIHLPNAVEKIAFDRFHVAKQPGEVVDKTRQNE
HPHLPVESRRQAKGTRFLWQHSDKWMTESRQEKLIWLRAQMKLTSLCWALKELAKDIW
SRPWSEERRNDWQRWLRPTVTSP"
misc_feature complement(10641..>10973)
/locus_tag="CP0012"
/note="ISL3 family transposase; Region: transpos_ISL3;
NF033550"
/db_xref="CDD:468079"
gene 11015..11218
/locus_tag="CP0013"
/db_xref="GeneID:1238180"
CDS 11015..11218
/locus_tag="CP0013"
/codon_start=1
/transl_table=11
/product="IS1 ORF"
/protein_id="NP_858146.1"
/db_xref="GeneID:1238180"
/translation="MPEPVYRTLLSSTSHVISKKCTQRIERHNLNLRTHLKRLTRKTI
CFSKSDDMHYKIIGWYLTINHHH"
misc_feature <11024..11215
/locus_tag="CP0013"
/note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400"
/db_xref="CDD:281403"
gene complement(11327..11905)
/locus_tag="CP0014"
/db_xref="GeneID:1238139"
CDS complement(11327..11905)
/locus_tag="CP0014"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858147.1"
/db_xref="GeneID:1238139"
/translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVKKAVLSGKINELNAC
HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
VSFVNREGKICHTAYVKSSDNSMTYYHANGSSIDKYITDMCGLICMRHIESTGIIFYM
LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
mobile_element complement(12299..12446)
/note="partial"
/mobile_element_type="insertion sequence:IS21"
mobile_element complement(12445..12562)
/note="partial"
/mobile_element_type="insertion sequence:IS21"
mobile_element complement(12698..13161)
/note="partial"
/mobile_element_type="insertion sequence:IS91"
gene complement(12871..13227)
/locus_tag="CP0015"
/db_xref="GeneID:1238081"
CDS complement(12871..13227)
/locus_tag="CP0015"
/codon_start=1
/transl_table=11
/product="IS91 orf"
/protein_id="NP_858148.1"
/db_xref="GeneID:1238081"
/translation="MLPRFADIFQQGNRWLNWLEKQPVQMSRLEHYAGQDEIGLRYNS
HRTKREENLVMSGDEFMERFSWHVADKGFRMVIRGPESGEAAITGRCGVRHNGDSEKN
GEANHKERDVSAVTEG"
misc_feature complement(13000..>13173)
/locus_tag="CP0015"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
mobile_element complement(13158..13490)
/note="partial"
/mobile_element_type="insertion sequence:IS91"
gene complement(13227..13412)
/locus_tag="CP0016"
/db_xref="GeneID:3170823"
CDS complement(13227..13412)
/locus_tag="CP0016"
/codon_start=1
/transl_table=11
/product="IS91 ORF2"
/protein_id="NP_858149.2"
/db_xref="GeneID:3170823"
/translation="MDAGNKKLVFWFVRVDDEGYPEIARCMEREFATIPAGINADGMY
CPECGTVHWPDGVIPPF"
mobile_element complement(13857..15284)
/mobile_element_type="insertion sequence:IS4"
gene complement(13870..15213)
/locus_tag="CP0017"
/db_xref="GeneID:1238092"
CDS complement(13870..15213)
/locus_tag="CP0017"
/codon_start=1
/transl_table=11
/product="IS4 orf"
/protein_id="NP_858150.1"
/db_xref="GeneID:1238092"
/translation="MPDSFMHIGQALDLGSRYDSLRNPLTSLGDYLDPELISRCLAES
GTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQ
RLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHA
GNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIGQTGDNTLTLMDKGYY
SLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNE
VTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRL
TLRSKKPELVKQELWGVLLAYNLVRYQMIKMAEHLKGYCPNQLSFSESCGMVMRMLMT
LQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA"
misc_feature complement(14128..15126)
/locus_tag="CP0017"
/note="IS4 family transposase; Region: transpos_IS4_1;
NF033592"
/db_xref="CDD:468101"
gene 15326..15661
/locus_tag="CP0018"
/db_xref="GeneID:1238181"
CDS 15326..15661
/locus_tag="CP0018"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858151.1"
/db_xref="GeneID:1238181"
/translation="MEQSLQPGACVAQIARENGINDNLLFNWRHQYRKGGLLPSGKNM
PALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRLKGKLTPALLQIL
IREIKGSSH"
misc_feature <15329..15601
/locus_tag="CP0018"
/note="IS66-like element accessory protein TnpA; Region:
IS66_access_TnpA; NF038385"
/db_xref="CDD:439678"
gene 15661..16008
/locus_tag="CP0019"
/db_xref="GeneID:1238080"
CDS 15661..16008
/locus_tag="CP0019"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF2"
/protein_id="NP_858152.1"
/db_xref="GeneID:1238080"
/translation="MISFPAGSRIWLVAGITDMRNGFNGLVSKVQNVLKDDPFSGHLF
IFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
KHPKRTERAGIRI"
misc_feature 15688..15957
/locus_tag="CP0019"
/note="IS66 family insertion sequence element accessory
protein TnpB; Region: IS66_TnpB; NF033819"
/db_xref="CDD:411392"
gene 16028..17335
/locus_tag="CP0020"
/db_xref="GeneID:1238078"
CDS 16028..17335
/locus_tag="CP0020"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF3"
/protein_id="NP_858153.1"
/db_xref="GeneID:1238078"
/translation="MDTSLAHENARLRALLQTQQDTIRQMAKYNRLLSQRVAAYASEI
NRLKALVAKLQRMQFGKSSEKLRAKTERQILEAQERISALQEEMAETLGEQYDPVLPS
PLRQSSARKPLPASLPRETRVIRPEEECCPACGGELSSLGCDVSEQLELISSAFKVIE
TQRPKLACCRCDHIVQAPVPSKPIARSYAGAGLLAHVVAGKYADYLPLYRQSEIYRRQ
GVELSRATLGRWTGAVAELLEPLYDILRQYVLMPGKVHADDIPVPVQEPGSGKTRTAR
LWVYVRDDRNAGSEMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQADAYGGYRALYESG
RITEAACMAHVRRKIHDVHARVPTDITTEALQRIGELYAIEAEVRGCSAEQRLAARKA
RAAPLMQSLYDWIQQQMKIHSLKMECLHGEHYYPSGNSAGNSV"
misc_feature 16163..16393
/locus_tag="CP0020"
/note="Transposase C of IS166 homeodomain; Region:
LZ_Tnp_IS66; pfam13007"
/db_xref="CDD:463771"
misc_feature 16334..>17272
/locus_tag="CP0020"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
mobile_element 17259..17456
/note="partial"
/mobile_element_type="insertion sequence:IS3"
gene 18104..18310
/locus_tag="CP0021"
/db_xref="GeneID:1238182"
CDS 18104..18310
/locus_tag="CP0021"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_858154.1"
/db_xref="GeneID:1238182"
/translation="MDAENETVLNANMTHHLGCEKNQLRSGSNSRNGCLTKIITTGDE
PLEIRTLRDRNGTFEPQQLKKNQP"
misc_feature 18119..>18304
/locus_tag="CP0021"
/note="Transposase, Mutator family; Region:
Transposase_mut; cl27632"
/db_xref="CDD:474953"
mobile_element 18392..18534
/note="partial"
/mobile_element_type="insertion sequence:IS630"
gene 18898..19575
/gene="ospD1"
/locus_tag="CP0022"
/db_xref="GeneID:1238014"
CDS 18898..19575
/gene="ospD1"
/locus_tag="CP0022"
/codon_start=1
/transl_table=11
/product="protein OspD1"
/protein_id="NP_858155.1"
/db_xref="GeneID:1238014"
/translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKNNIINVTNTAIS
HAINEEKSGGGYSGVSFRKLAKIQNISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
DKIQELF"
gene 20087..20401
/locus_tag="CP0023"
/db_xref="GeneID:1238127"
CDS 20087..20401
/locus_tag="CP0023"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858156.1"
/db_xref="GeneID:1238127"
/translation="MLQRQRGKVGFAQLPVDFVAIEPDSVQGVGKRANLTNRCFIIRI
NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
RP"
gene 20683..21249
/gene="ipgB2"
/locus_tag="CP0024"
/db_xref="GeneID:1238044"
CDS 20683..21249
/gene="ipgB2"
/locus_tag="CP0024"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858157.2"
/db_xref="GeneID:1238044"
/translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
EKDYRISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
FEKNVQYIDLKKLRGNMSDYITNLESPF"
misc_feature 20773..21204
/gene="ipgB2"
/locus_tag="CP0024"
/note="IpaB/EvcA family; Region: IpaB_EvcA; pfam03278"
/db_xref="CDD:281295"
gene 21746..22330
/locus_tag="CP0025"
/db_xref="GeneID:1238075"
CDS 21746..22330
/locus_tag="CP0025"
/codon_start=1
/transl_table=11
/product="IS3 ORF2"
/protein_id="NP_858158.1"
/db_xref="GeneID:1238075"
/translation="MSKLILPSNTVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITY
LRTDEGWLYLAVVIDLWSRAVIGWSMSPRLTAQLACDALQMALWRRKRPRNVIVHSDR
GSQYCSADYQALLKWHNLRGSMSAKGCCYDNACVESFFHSLKVECLHGEHFISREIMR
ATVFNYIECDYNRWRRHSWCGGLSPEQFENQNLA"
misc_feature <21779..22312
/locus_tag="CP0025"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element 21774..22360
/note="partial"
/mobile_element_type="insertion sequence:IS3"
mobile_element 22659..23014
/note="partial"
/mobile_element_type="insertion sequence:iso-IS1"
mobile_element 23035..23794
/note="partial"
/mobile_element_type="insertion sequence:IS100"
gene 23117..23899
/locus_tag="CP0026"
/db_xref="GeneID:1238072"
CDS 23117..23899
/locus_tag="CP0026"
/codon_start=1
/transl_table=11
/product="IS100 ORF1"
/protein_id="NP_858159.1"
/db_xref="GeneID:1238072"
/translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVSREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
PRLCRPFRLRDPHKITANKPAPYFGRFWTDGLELCSVLFVLK"
misc_feature 23144..>23803
/locus_tag="CP0026"
/note="IS21 family transposase; Region: transpos_IS21;
NF033546"
/db_xref="CDD:468077"
mobile_element 23794..25095
/mobile_element_type="insertion sequence:ISSfl3"
gene complement(23820..25043)
/locus_tag="CP0028"
/db_xref="GeneID:1238183"
CDS complement(23820..25043)
/locus_tag="CP0028"
/codon_start=1
/transl_table=11
/product="ISSfl3 ORF"
/protein_id="NP_858161.2"
/db_xref="GeneID:1238183"
/translation="MCQQFNEITAMPVHKVCQNFFRDALAPFHQYRQNALMDATMALI
NGASLTQTSIGRFLPGNAQVKNKIKRIDRLMGNEALHRDIPMIFRNITSMLTRQLSLC
VIAVDWSGYPSQEHHVLRASLLCDGRSIPLLSKVVPSEKQNNPLIQHDFLDSLAQSLP
PDARVIIVTDAGFQSAWFHHITSLGWDFIGRIRNNVQYCLDNAPERWLKVSDSPECKT
PEYMGAGRLVKERKKSIRGHFYTYKKSAKGRKKKRSKGQSGLNKTDKEQSKSAKEAWL
IFSSTNDFRAREIIKLYSRRMQIEQNFRDEKNGRFGFGLRASKSRSTGRILVLSLLAT
LSTIVMWLLGYHAENKGLHLKYQANSIKSRRVISYLTLAKNVLRHSPLILRRTVLSTV
LNHLSRTYRNMVLVY"
misc_feature complement(23838..24899)
/locus_tag="CP0028"
/note="IS4 family transposase; Region: transpos_IS4_2;
NF033591"
/db_xref="CDD:468100"
gene 25018..25449
/locus_tag="CP0027"
/db_xref="GeneID:1238184"
CDS 25018..25449
/locus_tag="CP0027"
/codon_start=1
/transl_table=11
/product="IS100 ORF1"
/protein_id="NP_858160.2"
/db_xref="GeneID:1238184"
/translation="MISLNCWHKSVDHIMLCLSRFLGIPQPFRAQTKGKVERMVQYTR
NSFYIPLMTRLRPMGSTVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSM
LALPPEKKEYDVHPGENLVSFDNPPQHHPLSIYDSFCRGVA"
misc_feature <25093..25338
/locus_tag="CP0027"
/note="IS21 family transposase; Region: transpos_IS21;
NF033546"
/db_xref="CDD:468077"
mobile_element 25096..26295
/note="partial"
/mobile_element_type="insertion sequence:IS100"
gene 25446..26228
/locus_tag="CP0029"
/db_xref="GeneID:1238077"
CDS 25446..26228
/locus_tag="CP0029"
/codon_start=1
/transl_table=11
/product="transposase/IS protein"
/protein_id="NP_858162.1"
/db_xref="GeneID:1238077"
/translation="MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFL
EHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIER
NENIVLLGPSGVGKTHLAIAMGYEAVRVGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ
RGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGD
AALTSAMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
misc_feature 25449..26225
/locus_tag="CP0029"
/note="transposase/IS protein; Provisional; Region:
PRK09183"
/db_xref="CDD:181681"
misc_feature 25773..25796
/locus_tag="CP0029"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(25776..25799,25959..25961)
/locus_tag="CP0029"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 25947..25964
/locus_tag="CP0029"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
gene 26244..26633
/locus_tag="CP0030"
/db_xref="GeneID:1238151"
CDS 26244..26633
/locus_tag="CP0030"
/codon_start=1
/transl_table=11
/product="iso-IS1 ORF2"
/protein_id="NP_858163.1"
/db_xref="GeneID:1238151"
/translation="MGRWWRYKWITFHPSLTQHWLWYAYNTKTGGVLAYTFGPRNDET
CRELLALLTPFCIGMVTSDDWGSYAREVPKEKHLTGKIFTQRIARNNRTLRTRIKRLA
RKTICFSRSVEIHEKVIGSFIEKHMFY"
misc_feature 26244..>26297
/locus_tag="CP0030"
/note="Condensing enzymes; Family of enzymes that catalyze
a (decarboxylating or non-decarboxylating) Claisen-like
condensation reaction. Members are share strong structural
similarity, and are involved in the synthesis and
degradation of fatty acids, and the...; Region:
cond_enzymes; cl09938"
/db_xref="CDD:447866"
misc_feature 26295..26630
/locus_tag="CP0030"
/note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400"
/db_xref="CDD:281403"
mobile_element 26295..26642
/note="partial"
/mobile_element_type="insertion sequence:iso-IS1"
gene 26955..28154
/gene="parA"
/locus_tag="CP0031"
/db_xref="GeneID:1238009"
CDS 26955..28154
/gene="parA"
/locus_tag="CP0031"
/codon_start=1
/transl_table=11
/product="plasmid segregation protein"
/protein_id="NP_858164.1"
/db_xref="GeneID:1238009"
/translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
EFIRANY"
misc_feature 26994..27269
/gene="parA"
/locus_tag="CP0031"
/note="ParA helix turn helix domain; Region: HTH_54;
pfam18607"
/db_xref="CDD:436616"
misc_feature 27411..28133
/gene="parA"
/locus_tag="CP0031"
/note="ParA-like ATPase involved in chromosome/plasmid
partitioning or cellulose biosynthesis protein BcsQ [Cell
cycle control, cell division, chromosome partitioning,
Cell motility]; Region: ParA; COG1192"
/db_xref="CDD:440805"
gene 28154..29134
/gene="parB"
/locus_tag="CP0032"
/db_xref="GeneID:1238008"
CDS 28154..29134
/gene="parB"
/locus_tag="CP0032"
/codon_start=1
/transl_table=11
/product="plasmid segregation protein"
/protein_id="NP_858165.1"
/db_xref="GeneID:1238008"
/translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
misc_feature 28319..28789
/gene="parB"
/locus_tag="CP0032"
/note="ParB/RepB/Spo0J family partition protein; Region:
parB_part; TIGR00180"
/db_xref="CDD:272946"
misc_feature 28736..29113
/gene="parB"
/locus_tag="CP0032"
/note="ParB family; Region: ParB; pfam08775"
/db_xref="CDD:430210"
gene complement(29339..29521)
/locus_tag="CP0034"
/db_xref="GeneID:1238239"
CDS complement(29339..29521)
/locus_tag="CP0034"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858167.2"
/db_xref="GeneID:1238239"
/translation="MHQPVKQLIARKFGLSCGFAMSIDTEKIKVRFSQINAGDFLFRH
GIPLTFVVKVYPSWRN"
gene 29516..29875
/locus_tag="CP0033"
/db_xref="GeneID:1238185"
CDS 29516..29875
/locus_tag="CP0033"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_858166.2"
/db_xref="GeneID:1238185"
/translation="MQQPKMTVAMEAGGASHYWAREIRKLDHDVILLPAQHVKAYQRC
QKNDYNDAQAIAEACQHGTIRPVPIKTLEQQDVQTFLNMRRLVSMERTQLINHIRGLL
AEYGIVFSKGAAELRQK"
misc_feature 29519..>29863
/locus_tag="CP0033"
/note="Transposase [Mobilome: prophages, transposons];
Region: COG3547"
/db_xref="CDD:442768"
gene complement(30161..31381)
/locus_tag="CP0035"
/pseudo
/db_xref="GeneID:3170824"
misc_feature complement(30161..31381)
/locus_tag="CP0035"
/note="Similar to Shigella flexneri putative reverse
transcriptase ref: NP_085197.1 (405 aa). BLAST with
identity of 97% in 405 aa. This CDS contains an in-frame
stop codon. The sequence has been checked and is believed
to be correct."
/pseudo
gene 31156..31551
/locus_tag="CP0037"
/db_xref="GeneID:1238240"
CDS 31156..31551
/locus_tag="CP0037"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858170.1"
/db_xref="GeneID:1238240"
/translation="MGSPECVPCHSTSGSVFPALVAETMFPNIAGSRSCIDCHHVAGR
TFSKSARRIRGAPLLRRTSRYDAQTSAFGISNDFRCISYVIPFWVVSSAMNVIPIPSL
QTHYRSFITTTNGSAPVSRYVPETGSHVP"
gene 31392..31811
/locus_tag="CP0038"
/db_xref="GeneID:1238241"
CDS 31392..31811
/locus_tag="CP0038"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858171.1"
/db_xref="GeneID:1238241"
/translation="MHQLRHPLLGCVFCNECDPHPFAPDPLQIFHHYYEWVRPCFPIR
AGNRFSRSLRWSGPGSCCLHTGCRAVSKQVSSALIRGRLYGPILASSKISMLHRTVYF
RSASRTHVTVDLCLFPESLTTSFLRMKQHRVVWSVLL"
mobile_element complement(32042..33347)
/mobile_element_type="insertion sequence:IS629"
gene complement(32084..32752)
/locus_tag="CP0039"
/db_xref="GeneID:1238065"
CDS complement(32084..32752)
/locus_tag="CP0039"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858172.1"
/db_xref="GeneID:1238065"
/translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
RVNHQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGND
DLAA"
misc_feature complement(32087..32752)
/locus_tag="CP0039"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
gene complement(32967..33293)
/locus_tag="CP0040"
/db_xref="GeneID:1238096"
CDS complement(32967..33293)
/locus_tag="CP0040"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858173.1"
/db_xref="GeneID:1238096"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
DRLWKK"
misc_feature complement(33003..33290)
/locus_tag="CP0040"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene complement(33299..33706)
/locus_tag="CP0041"
/db_xref="GeneID:1238188"
CDS complement(33299..33706)
/locus_tag="CP0041"
/codon_start=1
/transl_table=11
/product="IS150 ORF B"
/protein_id="NP_858174.1"
/db_xref="GeneID:1238188"
/translation="MRQQQDEQGRFSICSRQAAVVQRLMGILSLKAAIKVKRYRSYRG
EVGQTAPYVLQRDFKATRPNEKWVTDFTEFAVNGRKLYLSPVIDLFNNEVISYSLSER
PVMNMVENMLDQAFKKLNEPPRESWRLNFLRKR"
misc_feature complement(<33323..>33646)
/locus_tag="CP0041"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element complement(33347..33646)
/note="partial"
/mobile_element_type="insertion sequence:IS150"
mobile_element 33643..35331
/mobile_element_type="insertion sequence:IS1294"
gene 33762..33950
/locus_tag="CP0042"
/db_xref="GeneID:1238242"
CDS 33762..33950
/locus_tag="CP0042"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858175.1"
/db_xref="GeneID:1238242"
/translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
LERRGDTAALTRLQDTGG"
gene 33960..35159
/locus_tag="CP0043"
/db_xref="GeneID:1238140"
CDS 33960..35159
/locus_tag="CP0043"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858176.1"
/db_xref="GeneID:1238140"
/translation="MLSAFTPRPLKRLFTANQCWTSFLDAGGLRDIEVEAVTKMLACG
TRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWVHL
VFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHP
HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITT
ESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLS
FRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRA
LGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDIS
LLRYMPA"
misc_feature 33987..35096
/locus_tag="CP0043"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
mobile_element complement(35330..36133)
/note="partial"
/mobile_element_type="insertion sequence:IS150"
gene complement(35565..36086)
/locus_tag="CP0044"
/db_xref="GeneID:1238103"
CDS complement(35565..36086)
/locus_tag="CP0044"
/codon_start=1
/transl_table=11
/product="IS150 ORF1(ORF A)"
/protein_id="NP_858177.1"
/db_xref="GeneID:1238103"
/translation="MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVA
LYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLK
VYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLVY
LKKLKALAHPTKK"
misc_feature complement(35907..36059)
/locus_tag="CP0044"
/note="Helix-turn-helix domain; Region: HTH_28; pfam13518"
/db_xref="CDD:463908"
misc_feature complement(<35568..35891)
/locus_tag="CP0044"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
gene 36124..36507
/locus_tag="CP0045"
/db_xref="GeneID:1238189"
CDS 36124..36507
/locus_tag="CP0045"
/codon_start=1
/transl_table=11
/product="IS100 ORF2"
/protein_id="NP_858178.1"
/db_xref="GeneID:1238189"
/translation="MQYISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMY
TRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAI
AMGYEAFKIFYDISKISLELYHNIH"
misc_feature 36124..>36447
/locus_tag="CP0045"
/note="Members of the P-loop NTPase domain superfamily are
characterized by a conserved nucleotide phosphate-binding
motif, also referred to as the Walker A motif
(GxxxxGK[S/T], where x is any residue), and the Walker B
motif (hhhh[D/E], where h is a...; Region: P-loop
containing Nucleoside Triphosphate Hydrolases; cl38936"
/db_xref="CDD:476819"
misc_feature 36394..36417
/locus_tag="CP0045"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature 36397..36420
/locus_tag="CP0045"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
mobile_element 36133..36447
/note="partial"
/mobile_element_type="insertion sequence:IS100"
gene complement(36449..37237)
/gene="virF"
/locus_tag="CP0046"
/db_xref="GeneID:1238022"
CDS complement(36449..37237)
/gene="virF"
/locus_tag="CP0046"
/codon_start=1
/transl_table=11
/product="transcriptional activator VirF"
/protein_id="NP_858179.2"
/db_xref="GeneID:1238022"
/translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
KKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
misc_feature complement(36473..37153)
/gene="virF"
/locus_tag="CP0046"
/note="transcriptional regulator HilD; Provisional;
Region: PRK15185"
/db_xref="CDD:185107"
misc_feature complement(36473..36718)
/gene="virF"
/locus_tag="CP0046"
/note="helix_turn_helix, arabinose operon control protein;
Region: HTH_ARAC; smart00342"
/db_xref="CDD:197666"
gene 37780..38067
/locus_tag="CP0047"
/db_xref="GeneID:1238172"
CDS 37780..38067
/locus_tag="CP0047"
/codon_start=1
/transl_table=11
/product="IS2 ORF2"
/protein_id="NP_858180.1"
/db_xref="GeneID:1238172"
/translation="MADNGSAYTAHETRQFARELNLEPCTTAVSSPQSNGIAERFMKT
MKEDCIAFMPKPRTALHNLAVAIEHYNENHPHSALGYLSPREYRRQRVMST"
misc_feature <37780..38052
/locus_tag="CP0047"
/note="IS2 transposase TnpB; Reviewed; Region: PRK09409"
/db_xref="CDD:181829"
gene 38249..38515
/gene="ospE2"
/locus_tag="CP0048"
/db_xref="GeneID:5563318"
CDS 38249..38515
/gene="ospE2"
/locus_tag="CP0048"
/note="secreted by the Mxi-Spa secretion machinery"
/codon_start=1
/transl_table=11
/product="OspE2"
/protein_id="YP_001449236.1"
/db_xref="GeneID:5563318"
/translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
IYELQIPAANRTKTLKFTATEMQWLTKINEAGIDEKQSQRYSDF"
gene complement(38612..38824)
/locus_tag="CP0050"
/db_xref="GeneID:1238190"
CDS complement(38612..38824)
/locus_tag="CP0050"
/codon_start=1
/transl_table=11
/product="IS1 encoded protein"
/protein_id="NP_858183.2"
/db_xref="GeneID:1238190"
/translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL
KSPSYTKSISWQHYRIEDRWSYSSLK"
mobile_element 38650..39417
/mobile_element_type="insertion sequence:IS1"
gene 38753..38980
/gene="insA"
/locus_tag="CP0049"
/db_xref="GeneID:1238108"
CDS 38753..38980
/gene="insA"
/locus_tag="CP0049"
/codon_start=1
/transl_table=11
/product="IS1 ORF1"
/protein_id="NP_858182.2"
/db_xref="GeneID:1238108"
/translation="MVRNGKSTAGHQRNLCSHCRKTWQLQFTYTASQPGTHQKIIDMA
MNGVGCRASARIMGIGLNTVLRHLKNSGRSR"
misc_feature 38756..>38977
/gene="insA"
/locus_tag="CP0049"
/note="IS1 family transposase; Region: transpos_IS1;
NF033558"
/db_xref="CDD:468085"
gene 39007..39402
/gene="insB"
/locus_tag="CP0051"
/db_xref="GeneID:1238107"
CDS 39007..39402
/gene="insB"
/locus_tag="CP0051"
/codon_start=1
/transl_table=11
/product="IS1 ORF2"
/protein_id="NP_858184.1"
/db_xref="GeneID:1238107"
/translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL
ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR
LGRKSLSFSKSVELHDKVIGHYLNIKHYQ"
misc_feature 39010..39399
/gene="insB"
/locus_tag="CP0051"
/note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400"
/db_xref="CDD:281403"
mobile_element 39632..41006
/mobile_element_type="insertion sequence:ISSfl2"
gene complement(39660..40860)
/locus_tag="CP0053"
/pseudo
/db_xref="GeneID:3170822"
misc_feature complement(39660..40860)
/locus_tag="CP0053"
/note="Similar to Shigella flexneri putative transposase
for IS110 ref: NP_085282.1 (398 aa). BLAST with identity
of 98% in 398 aa. This CDS contains an in-frame stop
codon. The sequence has been checked and is believed to be
correct."
/pseudo
gene 41197..42888
/gene="ipaH2.5"
/locus_tag="CP0054"
/db_xref="GeneID:1238051"
CDS 41197..42888
/gene="ipaH2.5"
/locus_tag="CP0054"
/codon_start=1
/transl_table=11
/product="invasion plasmid antigen"
/protein_id="NP_858187.1"
/db_xref="GeneID:1238051"
/translation="MIKSTNIQVIGSGIMHQINNIHSLTLFSLPVSLSPSCNEYYLKV
WSEWERNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLALANNFIEQLPELPFSMNRAVL
MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPQIFFSMGNSA
TISAPEHSLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTS
GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGL
FDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAV
KEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEE
QKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLA"
misc_feature 41215..41385
/gene="ipaH2.5"
/locus_tag="CP0054"
/note="Type III secretion system leucine rich repeat
protein; Region: TTSSLRR; pfam12468"
/db_xref="CDD:432576"
misc_feature 41317..42882
/gene="ipaH2.5"
/locus_tag="CP0054"
/note="type III secretion system effector E3 ubiquitin
transferase SlrP; Region: PRK15370"
/db_xref="CDD:185268"
misc_feature 41419..41472
/gene="ipaH2.5"
/locus_tag="CP0054"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature 41473..41532
/gene="ipaH2.5"
/locus_tag="CP0054"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature 41533..41589
/gene="ipaH2.5"
/locus_tag="CP0054"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature 41593..41652
/gene="ipaH2.5"
/locus_tag="CP0054"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature 41773..41844
/gene="ipaH2.5"
/locus_tag="CP0054"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
mobile_element 42886..44191
/mobile_element_type="insertion sequence:IS629"
gene 42940..43266
/locus_tag="CP0055"
/db_xref="GeneID:1238101"
CDS 42940..43266
/locus_tag="CP0055"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858188.1"
/db_xref="GeneID:1238101"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF
DRLWKK"
misc_feature 42943..43230
/locus_tag="CP0055"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 43481..44149
/locus_tag="CP0056"
/db_xref="GeneID:1238066"
CDS 43481..44149
/locus_tag="CP0056"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858189.1"
/db_xref="GeneID:1238066"
/translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGCIVGWRVSSSMGLTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGND
DLAA"
misc_feature 43481..44146
/locus_tag="CP0056"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
gene complement(44189..44377)
/locus_tag="CP0057"
/db_xref="GeneID:1238192"
CDS complement(44189..44377)
/locus_tag="CP0057"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858190.1"
/db_xref="GeneID:1238192"
/translation="MCRVPGVSRSGYYDRVQHAPSDRKQSDERLKLEIKVAHIRTRET
YGTRRLQTELADNGIIVG"
misc_feature complement(<44192..>44377)
/locus_tag="CP0057"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element 44211..44779
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene complement(44413..44715)
/locus_tag="CP0058"
/db_xref="GeneID:1238089"
CDS complement(44413..44715)
/locus_tag="CP0058"
/codon_start=1
/transl_table=11
/product="IS600 ORF1"
/protein_id="NP_858191.1"
/db_xref="GeneID:1238089"
/translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR"
misc_feature complement(44443..44715)
/locus_tag="CP0058"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene complement(44783..45265)
/locus_tag="CP0059"
/db_xref="GeneID:1238126"
CDS complement(44783..45265)
/locus_tag="CP0059"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858192.1"
/db_xref="GeneID:1238126"
/translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
RTFVICLEDTLRIVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCTQGH
GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
"
misc_feature complement(44825..>45145)
/locus_tag="CP0059"
/note="Predicted N-acetyltransferase YhbS [General
function prediction only]; Region: yhbS; COG3153"
/db_xref="CDD:442387"
gene complement(45256..45558)
/locus_tag="CP0060"
/db_xref="GeneID:1238125"
CDS complement(45256..45558)
/locus_tag="CP0060"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858193.2"
/db_xref="GeneID:1238125"
/translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
DFIMELAYQEAKNIILDQRLFVLDNERYDSFITQLEAPVQNAEGRERLMAVKPEWK"
misc_feature complement(45262..45519)
/locus_tag="CP0060"
/note="Uncharacterized conserved protein, DUF1778 family
[Function unknown]; Region: COG4453"
/db_xref="CDD:443551"
gene 45830..46102
/locus_tag="CP0060a"
/db_xref="GeneID:3170826"
CDS 45830..46102
/locus_tag="CP0060a"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="YP_145811.1"
/db_xref="GeneID:3170826"
/translation="MSHNLEHQKVHTRMVKEVLKAVARANNHPYKSVFADFITGHPSC
TVCFWETFHKMYPDSPYEYVTFCHTCRRFDLYETEAEMKADDPKWW"
gene 46083..47291
/locus_tag="CP0061"
/db_xref="GeneID:1238141"
CDS 46083..47291
/locus_tag="CP0061"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858194.1"
/db_xref="GeneID:1238141"
/translation="MTRSGGDFQPRPLKRLFTTNQCWTSFLDAGGLRDIEVEAVTKML
ACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDW
VHLVFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLN
WHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSH
ITTESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGA
SLSFRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQV
YRALGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNAR
DISLLRYMPA"
misc_feature 46119..47228
/locus_tag="CP0061"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
mobile_element 46110..47463
/note="partial"
/mobile_element_type="insertion sequence:IS1294"
gene 47361..47591
/locus_tag="CP0062"
/db_xref="GeneID:1238193"
CDS 47361..47591
/locus_tag="CP0062"
/codon_start=1
/transl_table=11
/product="ISSfl1 ORF2"
/protein_id="NP_858195.1"
/db_xref="GeneID:1238193"
/translation="MQREKTPEWREKQKSSRGIRRGQGYRLVFQFPIRERCFGRLKEY
RRIATRYDKTARNYLAMVKLGCIRLFYQRLRN"
misc_feature <47463..47570
/locus_tag="CP0062"
/note="IS5 family transposase; Region: transpos_IS5_3;
NF033580"
/db_xref="CDD:468097"
gene complement(47740..49194)
/gene="ospC2"
/locus_tag="CP0063"
/db_xref="GeneID:1238023"
CDS complement(47740..49194)
/gene="ospC2"
/locus_tag="CP0063"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858196.1"
/db_xref="GeneID:1238023"
/translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
TDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
FNFTKQDIAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFISNGLVDVNKRFQKAN
SGDTMLDNAMKSKDSKTIDFLLKNGAVSGKRFGR"
misc_feature complement(47749..48624)
/gene="ospC2"
/locus_tag="CP0063"
/note="Shigella flexneri OspC protein; Region:
Shigella_OspC; pfam06128"
/db_xref="CDD:283728"
gene complement(49511..49708)
/locus_tag="CP0064"
/db_xref="GeneID:1238194"
CDS complement(49511..49708)
/locus_tag="CP0064"
/codon_start=1
/transl_table=11
/product="IS1 encoded protein"
/protein_id="NP_858197.1"
/db_xref="GeneID:1238194"
/translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSYASTL
KSPSYTKSVSWQHYPLFVERP"
mobile_element 49534..50214
/note="partial"
/mobile_element_type="insertion sequence:IS1"
gene 49783..50241
/gene="insB"
/locus_tag="CP0065"
/db_xref="GeneID:1238098"
CDS 49783..50241
/gene="insB"
/locus_tag="CP0065"
/codon_start=1
/transl_table=11
/product="IS1 ORF2"
/protein_id="NP_858198.1"
/db_xref="GeneID:1238098"
/translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD
EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG
CPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLNRPGNPGD"
misc_feature 49891..50214
/gene="insB"
/locus_tag="CP0065"
/note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400"
/db_xref="CDD:281403"
mobile_element 50213..51518
/mobile_element_type="insertion sequence:IS629"
gene 50267..50593
/locus_tag="CP0066"
/db_xref="GeneID:1238097"
CDS 50267..50593
/locus_tag="CP0066"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858199.1"
/db_xref="GeneID:1238097"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
DRLWKK"
misc_feature 50270..50557
/locus_tag="CP0066"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 50808..51476
/locus_tag="CP0067"
/db_xref="GeneID:1238067"
CDS 50808..51476
/locus_tag="CP0067"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858200.1"
/db_xref="GeneID:1238067"
/translation="MLREGIRVARCTVARLMVVMGLAGVLRGKKVRTTISRKAVAAGD
RVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGND
DLAA"
misc_feature 50808..51473
/locus_tag="CP0067"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
gene 51442..51930
/locus_tag="CP0068"
/db_xref="GeneID:1238195"
CDS 51442..51930
/locus_tag="CP0068"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858201.1"
/db_xref="GeneID:1238195"
/translation="MLPSETMIWQPEFTDKTLSRKPGAVHAVRQQRSKALLTSLNEWM
VEKNGTLSKKSRLGEAFSYVLNQWDALCYYSDDGLAEADNNTAERALRTVCLGKKNYM
FFGSDHGGDRGALLYGLIGSCRLNGIDPEAYLRHILSVLPEWPSNRVDELLPWNVVLT
DK"
misc_feature <51505..51858
/locus_tag="CP0068"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
gene 51950..52576
/locus_tag="CP0069"
/db_xref="GeneID:1238161"
CDS 51950..52576
/locus_tag="CP0069"
/codon_start=1
/transl_table=11
/product="IS21 ORF2"
/protein_id="NP_858202.1"
/db_xref="GeneID:1238161"
/translation="MTLTELLWRESEKLRRYKKEARLPVAKTLSEYDFIQLPELNGAQ
FQQLCETTDWVDAGENVLLFGASGLGKSHLAAAIVDGVVGQGYRARFYSAGELLQELR
KARAQLKLNELLLKLDRYRVIVVDDLGYVKRDSAETGVLFELIAHRYERGSLVITSNH
PFSMWGSIFVDETMAVAAADRLIHHGYMFELKGESYRKKTAKAVTSVT"
misc_feature 51962..52549
/locus_tag="CP0069"
/note="IS21-like element helper ATPase IstB; Region:
IS21_help_AAA; NF038214"
/db_xref="CDD:439516"
gene complement(52745..56839)
/gene="sepA"
/locus_tag="CP0070"
/db_xref="GeneID:1238005"
CDS complement(52745..56839)
/gene="sepA"
/locus_tag="CP0070"
/codon_start=1
/transl_table=11
/product="extracellular serine protease SepA"
/protein_id="NP_858203.1"
/db_xref="GeneID:1238005"
/translation="MNKIYYLKYCHITKSLIAVSELARRVTCKSHRRLSRRVILTSVA
ALSLSSAWPALSATVSAEIPYQIFRDFAENKGQFTPGTTNISIYDKQGNLVGKLDKAP
MADFSSATITTGSLPPGDHTLYSPQYVVTAKHVSGSDTMSFGYAKNTYTAVGTNNNSG
LDIKTRRLSKLVTEVAPAEVSDIGAVSGAYQAGGRFTEFYRLGGGMQYVKDKNGNRTQ
VYTNGGFLVGGTVSALNSYNNGQMITAQTGDIFNPANGPLANYLNMGDSGSPLFAYDS
LQKKWVLIGVLSSGTNYGNNWVVTTQDFLGQQPQNDFDKTIAYTSGEGVLQWKYDAAN
GTGTLTQGNTTWDMHGKKGNDLNAGKNLLFTGNNGEVVLQNSVNQGAGYLQFAGDYRV
SALNGQTWMGGGIITDKGTHVLWQVNGVAGDNLHKTGEGTLTVNGTGVNAGGLKVGDG
TVILNQQADADGKVQAFSSVGIASGRPTVVLSDSQQVNPDNISWGYRGGRLELNGNNL
TFTRLQAADYGAIITNNSEKKSTVTLDLQTLKASDINVPVNTVSIFGGRGAPGDLYYD
SSTKQYFILKASSYSPFFSDLNNSSVWQNVGKDRNKAIDTVKQQKIEASSQPYMYHGQ
LNGNMDVNIPQLSGKDVLALDGSVNLPEGSITKKSGTLIFQGHPVIHAGTTTSSSQSD
WETRQFTLEKLKLDAATFHLSRNGKMQGDINATNGSTVILGSSRVFTDRSDGTGNAVF
SVEGSATATTVGDQSDYSGNVTLENKSSLQIMERFTGGIEAYDSTVSVTSQNAVFDRV
GSFVNSSLTLGKGAKLTAQSGIFSTGAVDVKENASLTLTGMPSAQKQGYYSPVISTTE
GINLEDNASFSVKNMGYLSSDIHAGTTAATINLGDSDADAGKTDSPLFSSLMKGYNAV
LRGSITGAQSTVNMINALWYSDGKSEAGALKAKGSRIELGDGKHFATLQVKELSADNT
TFLMHTNNSRADQLNVTDKLSGSNNSVLVDFLNKPASEMSVTLITAPKGSDEKTFTAG
TQQIGFSNVTPVISTEKTDDATKWVLTGYQTTADAGASKAAKDFMASGYKSFLTEVNN
LNKRMGDLRDTQGDAGVWARIMNGTGSADGDYSDNYTHVQIGVDRKHELDGVDLFTGA
LLTYTDSNASSHAFSGKNKSVGGGLYASALFNSGAYFDLIGKYLHHDNQHTANFASLG
TKDYSSHSWYAGAEVGYRYHLTKESWVEPQIELVYGSVSGKAFSWEDRGMALSMKDKD
YNPLIGRTGVDVGRAFSGDDWKITARAGLGYQFDLLANGETVLQDASGEKRFEGEKDS
RMLMTVGMNAEIKDNMRLGLELEKSAFGKYNVDNAINANFRYVF"
misc_feature complement(56687..56839)
/gene="sepA"
/locus_tag="CP0070"
/note="Extended Signal Peptide of Type V secretion system;
Region: ESPR; pfam13018"
/db_xref="CDD:463773"
misc_feature complement(54533..56671)
/gene="sepA"
/locus_tag="CP0070"
/note="Immunoglobulin A1 protease; Region: Peptidase_S6;
pfam02395"
/db_xref="CDD:396804"
misc_feature complement(53651..54373)
/gene="sepA"
/locus_tag="CP0070"
/note="Pertactin-like passenger domains (virulence
factors), C-terminal, subgroup 1, of autotransporter
proteins of the type V secretion system of Gram-negative
bacteria. This subgroup includes the passenger domains of
Neisseria and Haemophilus IgA1 proteases; Region:
PL1_Passenger_AT; cd01343"
/db_xref="CDD:238653"
misc_feature complement(52748..53977)
/gene="sepA"
/locus_tag="CP0070"
/note="outer membrane autotransporter barrel domain;
Region: autotrans_barl; TIGR01414"
/db_xref="CDD:273608"
mobile_element 57122..57584
/note="partial"
/mobile_element_type="insertion sequence:IS1294"
gene 57241..57429
/locus_tag="CP0071"
/db_xref="GeneID:1238243"
CDS 57241..57429
/locus_tag="CP0071"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858204.1"
/db_xref="GeneID:1238243"
/translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
LERRGDTAALTRLQDTGG"
gene 57439..58638
/locus_tag="CP0072"
/db_xref="GeneID:1238142"
CDS 57439..58638
/locus_tag="CP0072"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858205.1"
/db_xref="GeneID:1238142"
/translation="MLSAFTPRPLKRLFTANQCWTSFLDAGGLRDIEVEAVTKMLACG
TRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWVHL
VFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHP
HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITT
ESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLS
FRYLDHKTGETATETLTQRELVARLNQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRA
LGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDIS
LLRYMPA"
misc_feature 57466..58575
/locus_tag="CP0072"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
mobile_element 57640..58810
/note="partial"
/mobile_element_type="insertion sequence:IS1294"
mobile_element complement(58809..59672)
/note="partial"
/mobile_element_type="insertion sequence:ISSfl1"
gene 58935..59264
/locus_tag="CP0073"
/db_xref="GeneID:1238148"
CDS 58935..59264
/locus_tag="CP0073"
/codon_start=1
/transl_table=11
/product="ISSfl1 ORF1"
/protein_id="NP_858206.1"
/db_xref="GeneID:1238148"
/translation="MFWVLCSSAPWRDLPERYGAWKTVYNRFNRWSKSGVINIIFNRL
LSLLDANGFIDWSATALDGSNIRALKCAAGAQKNIPISTEIMGRVALAAVLAPKSIWQ
QTEVASR"
misc_feature 58935..>59201
/locus_tag="CP0073"
/note="IS5 family transposase; Region: transpos_IS5_3;
NF033580"
/db_xref="CDD:468097"
gene 59270..59659
/locus_tag="CP0074"
/db_xref="GeneID:1238145"
CDS 59270..59659
/locus_tag="CP0074"
/codon_start=1
/transl_table=11
/product="ISSfl1 ORF2"
/protein_id="NP_858207.1"
/db_xref="GeneID:1238145"
/translation="MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSG
RALRNELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIAT
RYDKTARNYLAMVKLGCIRLFYQRLRN"
misc_feature <59270..59638
/locus_tag="CP0074"
/note="IS5 family transposase; Region: transpos_IS5_3;
NF033580"
/db_xref="CDD:468097"
mobile_element 59670..60829
/mobile_element_type="insertion sequence:IS630"
gene 59774..60805
/locus_tag="CP0075"
/db_xref="GeneID:1238087"
CDS 59774..60805
/locus_tag="CP0075"
/codon_start=1
/transl_table=11
/product="IS630 orf"
/protein_id="NP_858208.1"
/db_xref="GeneID:1238087"
/translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSVGIVWRRAAPTLRIRDPHKDEK
MAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKYYLAGA
LHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWLK
ENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPFP
GGKHGLAKV"
misc_feature 59858..60760
/locus_tag="CP0075"
/note="IS630 family transposase; Region: transpos_IS630;
NF033545"
/db_xref="CDD:468076"
gene 60987..61271
/locus_tag="CP0076"
/db_xref="GeneID:1238083"
CDS 60987..61271
/locus_tag="CP0076"
/codon_start=1
/transl_table=11
/product="iso-IS1 ORF1"
/protein_id="NP_858209.1"
/db_xref="GeneID:1238083"
/translation="MRFSMTTVTVHCPRCNSDEVYRHGRSCSRHERFRCRSCKRVFQL
TYSYEARKLGVKEQIVEMAHNGAGGRDTARTLKIGINTVIRTLKSSRPGG"
misc_feature 61020..>61262
/locus_tag="CP0076"
/note="IS1 family transposase; Region: transpos_IS1;
NF033558"
/db_xref="CDD:468085"
mobile_element 61107..61699
/note="partial"
/mobile_element_type="insertion sequence:iso-IS1"
gene 61397..61579
/locus_tag="CP0077"
/db_xref="GeneID:1238196"
CDS 61397..61579
/locus_tag="CP0077"
/codon_start=1
/transl_table=11
/product="iso-IS1 ORF2"
/protein_id="NP_858210.1"
/db_xref="GeneID:1238196"
/translation="MLAYTCGPRNDETCRELLALLTPFCIGMVTSDDWGSYAREVPEE
KHLTGKIFTQRMNVTT"
misc_feature <61397..>61564
/locus_tag="CP0077"
/note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400"
/db_xref="CDD:281403"
gene 62214..63911
/gene="ipaH7.8"
/locus_tag="CP0078"
/db_xref="GeneID:1238049"
CDS 62214..63911
/gene="ipaH7.8"
/locus_tag="CP0078"
/codon_start=1
/transl_table=11
/product="invasion plasmid antigen"
/protein_id="NP_858211.1"
/db_xref="GeneID:1238049"
/translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPKHISALIVENNKLTSLPKLPAFLKEL
NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
SFSQLDSSYRINISGNPLSTRVLQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLAD
AVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLE
KLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL
GREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGV
TANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYS
QRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSRLHHS"
misc_feature 62220..63866
/gene="ipaH7.8"
/locus_tag="CP0078"
/note="type III secretion system effector E3 ubiquitin
transferase SlrP; Region: PRK15370"
/db_xref="CDD:185268"
misc_feature 62448..62507
/gene="ipaH7.8"
/locus_tag="CP0078"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 62508..62567
/gene="ipaH7.8"
/locus_tag="CP0078"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 62688..62747
/gene="ipaH7.8"
/locus_tag="CP0078"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 62748..62813
/gene="ipaH7.8"
/locus_tag="CP0078"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 62814..62888
/gene="ipaH7.8"
/locus_tag="CP0078"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 62889..62954
/gene="ipaH7.8"
/locus_tag="CP0078"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
gene 64339..66063
/gene="ipaH4.5"
/locus_tag="CP0079"
/db_xref="GeneID:1238050"
CDS 64339..66063
/gene="ipaH4.5"
/locus_tag="CP0079"
/codon_start=1
/transl_table=11
/product="invasion plasmid antigen"
/protein_id="NP_858212.1"
/db_xref="GeneID:1238050"
/translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQSLKYLKVGENQLRRL
SRLPQELLALDVSNNLLTSLPENIITLPICTNVNISGNPLSTHVLQSLQRLTSSPDYH
GPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR
LSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRK
TLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTM
LAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKR
TEADRWAQAEEQKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYR
QLTDEVLA"
misc_feature 64348..64500
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="Type III secretion system leucine rich repeat
protein; Region: TTSSLRR; pfam12468"
/db_xref="CDD:432576"
misc_feature 64429..66057
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="type III secretion system effector E3 ubiquitin
transferase SlrP; Region: PRK15370"
/db_xref="CDD:185268"
misc_feature 64588..64647
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 64648..64707
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 64708..64770
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 64891..64950
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 64951..65007
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 65011..65079
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 65080..65145
/gene="ipaH4.5"
/locus_tag="CP0079"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
mobile_element 66061..67365
/mobile_element_type="insertion sequence:IS629"
gene 66115..66441
/locus_tag="CP0080"
/db_xref="GeneID:1238112"
CDS 66115..66441
/locus_tag="CP0080"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858213.1"
/db_xref="GeneID:1238112"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWGRQHERDTGGGDGGLITAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
DRLWKK"
misc_feature 66118..66405
/locus_tag="CP0080"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 66656..67369
/locus_tag="CP0081"
/db_xref="GeneID:1238068"
CDS 66656..67369
/locus_tag="CP0081"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858214.1"
/db_xref="GeneID:1238068"
/translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKLIMLPSETM
IWQPEFTDKTLSRKPGAVQ"
misc_feature 66656..67282
/locus_tag="CP0081"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
mobile_element 67366..67576
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene 68288..69691
/gene="ipgH"
/locus_tag="CP0082"
/db_xref="GeneID:1238111"
CDS 68288..69691
/gene="ipgH"
/locus_tag="CP0082"
/codon_start=1
/transl_table=11
/product="invasion plasmid gene product"
/protein_id="NP_858215.1"
/db_xref="GeneID:1238111"
/translation="MRQLVISITEGLNMSLFTEPKEIERLPSEEIERLYPVLRYRVFI
SIFLGYMGYYFVRNTTSVLSGVLHMSATEIGIISCAGFLSYGISKFVSGLISDRSNSK
VFLSLGLFLSGLVNFLIGYIPGIITSVTLFSTMYLLNGWIQGMGYPPGAKTLVFWYEH
RERITWATLWNLSHNVGGALAPVLIGFSFGFFGDSALDHARAAFIFPGVLCMAMSVLI
YFIQVDRPVSVGLPPIEEWKGNVVSHPAKGREQGPRLSIPDIIRKHIIRNNKLIYCCI
YGSFVYILRYGIVSWAPKFLSDSLDVGGKDMGKLASMGGGSVFEIGGVAGMLLAGYLS
VRLFRNSKPLTNTLFLALTIILLIAYWYVPSGNEYLWLNYTILILLGLAVYGPVMFIG
LYSMELVPKEAAGAASGLSGTFSYIFGSIVATLGMGLVVDYLGWGATFIVLILSAVFA
IIFTLMSRERSLEFEKE"
misc_feature 68402..69661
/gene="ipgH"
/locus_tag="CP0082"
/note="Glycerol-3-Phosphate Transporter of the Major
Facilitator Superfamily of transporters; Region: MFS_GlpT;
cd17345"
/db_xref="CDD:340903"
misc_feature order(68444..68449,68456..68461,68468..68470,68552..68554,
68714..68719,68723..68731,68738..68740,68798..68800,
68807..68812,68819..68821,69119..69121,69128..69133,
69140..69148,69155..69157,69254..69256,69266..69268,
69434..69439,69449..69451,69461..69463,69509..69511,
69518..69523,69530..69535,69542..69544)
/gene="ipgH"
/locus_tag="CP0082"
/note="putative chemical substrate binding pocket
[chemical binding]; other site"
/db_xref="CDD:340903"
gene 69660..69950
/locus_tag="CP0083"
/db_xref="GeneID:1238197"
CDS 69660..69950
/locus_tag="CP0083"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858216.1"
/db_xref="GeneID:1238197"
/translation="MNAHWSSKKSNFLRKNIKLLTKYLFFESQGIPDKVDIVSRLKTY
GYSISGVETDDGYKALVRAFQLHFRQKNYDGIMDAETAAILYALLEKYFPGK"
mobile_element 70088..71416
/mobile_element_type="insertion sequence:iso-IS10R"
gene 70195..71403
/locus_tag="CP0084"
/db_xref="GeneID:1238119"
CDS 70195..71403
/locus_tag="CP0084"
/codon_start=1
/transl_table=11
/product="iso-IS10R ORF"
/protein_id="NP_858217.1"
/db_xref="GeneID:1238119"
/translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL
GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR
EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS
DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISSLHDMSSSHSKTLGYKR
LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR
TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL
AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL
FTHGYVLGKL"
misc_feature 70309..71364
/locus_tag="CP0084"
/note="IS4 family transposase; Region: transpos_IS4_2;
NF033591"
/db_xref="CDD:468100"
gene complement(71382..71573)
/locus_tag="CP0085"
/db_xref="GeneID:1238116"
CDS complement(71382..71573)
/locus_tag="CP0085"
/codon_start=1
/transl_table=11
/product="IS100 ORF2"
/protein_id="NP_858218.1"
/db_xref="GeneID:1238116"
/translation="MLHEEKLARHQRKQAMYTRMAAFPAVKMFEEYDFTFATGAPQKQ
LQSLRSLSSERSPHNFPKT"
misc_feature complement(<71418..71573)
/locus_tag="CP0085"
/note="Members of the P-loop NTPase domain superfamily are
characterized by a conserved nucleotide phosphate-binding
motif, also referred to as the Walker A motif
(GxxxxGK[S/T], where x is any residue), and the Walker B
motif (hhhh[D/E], where h is a...; Region: P-loop
containing Nucleoside Triphosphate Hydrolases; cl38936"
/db_xref="CDD:476819"
mobile_element complement(71417..71582)
/note="partial"
/mobile_element_type="insertion sequence:IS100"
gene complement(71614..72117)
/locus_tag="CP0086"
/db_xref="GeneID:1238198"
CDS complement(71614..72117)
/locus_tag="CP0086"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858219.1"
/db_xref="GeneID:1238198"
/translation="MRATAEEALKRISELYAIEDEIRGLPESECLAVRQQRSKALLTS
LHEWMVEKNGTLSKKSRLGEAFSYVLNQWDALCYYSDDGLAEADNNTAERALRAVCLG
KKNYVFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRHILSVLPEWPSNRVDDLLPW
KVVLPSG"
misc_feature complement(71686..>72105)
/locus_tag="CP0086"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
gene complement(72090..72881)
/locus_tag="CP0087"
/db_xref="GeneID:1238069"
CDS complement(72090..72881)
/locus_tag="CP0087"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858220.1"
/db_xref="GeneID:1238069"
/translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
RVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKLIMLPSETM
IWQPEFTDKTLSRKPGAVQSASPVPPDRARHSGPRITCVRRQKKP"
misc_feature complement(72255..72881)
/locus_tag="CP0087"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
mobile_element complement(72172..73476)
/mobile_element_type="insertion sequence:IS629"
gene complement(73096..73422)
/locus_tag="CP0088"
/db_xref="GeneID:1238115"
CDS complement(73096..73422)
/locus_tag="CP0088"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858221.1"
/db_xref="GeneID:1238115"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF
DRLWKK"
misc_feature complement(73132..73419)
/locus_tag="CP0088"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
mobile_element 73621..74402
/note="partial"
/mobile_element_type="insertion sequence:IS100"
gene 73674..74336
/locus_tag="CP0089"
/db_xref="GeneID:1238073"
CDS 73674..74336
/locus_tag="CP0089"
/codon_start=1
/transl_table=11
/product="transposase/IS protein"
/protein_id="NP_858222.1"
/db_xref="GeneID:1238073"
/translation="MDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFAT
GAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRVGIKVRFTTAADL
LLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAM
ILTSNLPFGQWDQTFAGDAALTSAMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEAN
PE"
misc_feature 73674..74333
/locus_tag="CP0089"
/note="transposase/IS protein; Provisional; Region:
PRK09183"
/db_xref="CDD:181681"
misc_feature 73881..73904
/locus_tag="CP0089"
/note="Walker A motif; other site"
/db_xref="CDD:99707"
misc_feature order(73884..73907,74067..74069)
/locus_tag="CP0089"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:99707"
misc_feature 74055..74072
/locus_tag="CP0089"
/note="Walker B motif; other site"
/db_xref="CDD:99707"
mobile_element complement(74540..75036)
/note="partial"
/mobile_element_type="insertion sequence:IS1294"
gene 74709..75071
/locus_tag="CP0090"
/db_xref="GeneID:1238199"
CDS 74709..75071
/locus_tag="CP0090"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858223.1"
/db_xref="GeneID:1238199"
/translation="MSGRHIPQQTDIPRVFLQPLHIQSRDGPAVYHPAATQHAFERVT
TQELFHHLCIAHFRHWFRFIHPQSTVHLRQLLSTHPVGKEPEVPHHLKKLLRDVLFQP
RDQLTLCPERSPHNFPKT"
gene complement(74712..74978)
/locus_tag="CP0164"
/db_xref="GeneID:3170838"
CDS complement(74712..74978)
/locus_tag="CP0164"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858297.1"
/db_xref="GeneID:3170838"
/translation="MVRYFGFLANRVCGEKLPQVYRALGMDKPEPVAKVCYAQMVKQF
LSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDISLLRYMPA"
misc_feature complement(74775..>74978)
/locus_tag="CP0164"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
mobile_element complement(75037..76365)
/mobile_element_type="insertion sequence:iso-IS10R"
gene complement(75050..76258)
/locus_tag="CP0091"
/db_xref="GeneID:1238120"
CDS complement(75050..76258)
/locus_tag="CP0091"
/codon_start=1
/transl_table=11
/product="iso-IS10R ORF"
/protein_id="NP_858224.1"
/db_xref="GeneID:1238120"
/translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL
GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR
EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS
DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR
LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR
TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL
AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL
FTHGYVLGKL"
misc_feature complement(75089..76144)
/locus_tag="CP0091"
/note="IS4 family transposase; Region: transpos_IS4_2;
NF033591"
/db_xref="CDD:468100"
gene complement(76328..77257)
/locus_tag="CP0092"
/db_xref="GeneID:1238143"
CDS complement(76328..77257)
/locus_tag="CP0092"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858225.1"
/db_xref="GeneID:1238143"
/translation="MTRSGGDFQPRPLKRLFTTNQCWTSFLDAGGLRDIEVEAVTKML
ACGTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDW
VHLVFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLN
WHPHVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSH
ITTESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGA
SLSFRYLDHKTGETATETLTQPDESPNDFYQNH"
misc_feature complement(<76367..77221)
/locus_tag="CP0092"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
gene complement(77913..79610)
/gene="ospD3"
/locus_tag="CP0093"
/db_xref="GeneID:1238012"
CDS complement(77913..79610)
/gene="ospD3"
/locus_tag="CP0093"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858226.1"
/db_xref="GeneID:1238012"
/translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
SFLLNLNCQVTDHSGRLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
VDRHTPTSMSSIIRWPDNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
PNGVSGLIIAFQNRNFEAIKTYMGIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
misc_feature complement(78771..79562)
/gene="ospD3"
/locus_tag="CP0093"
/note="ShET2 enterotoxin, N-terminal region; Region:
Toxin_15; pfam07906"
/db_xref="CDD:369588"
gene complement(79939..81351)
/gene="ospC1"
/locus_tag="CP0094"
/db_xref="GeneID:1238025"
CDS complement(79939..81351)
/gene="ospC1"
/locus_tag="CP0094"
/codon_start=1
/transl_table=11
/product="protein OspC1"
/protein_id="NP_858227.1"
/db_xref="GeneID:1238025"
/translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
KNLKDSANIIKSFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
GICTKRNTYADDIKKIANHDFVFFGVEISNHQKKHPLNTKHHTVDFGANAYIIDHDSP
YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
VKIREISLEEAVTASNYEEINKQVTNKKIALQALFLSITNQKEDVALYILSNFEITRQ
DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
NAEMIKLLLKYGATSDNKYI"
misc_feature complement(79945..80796)
/gene="ospC1"
/locus_tag="CP0094"
/note="Shigella flexneri OspC protein; Region:
Shigella_OspC; pfam06128"
/db_xref="CDD:283728"
gene complement(81806..82105)
/locus_tag="CP0095"
/db_xref="GeneID:1238200"
CDS complement(81806..82105)
/locus_tag="CP0095"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF3"
/protein_id="NP_858228.1"
/db_xref="GeneID:1238200"
/translation="MDTSLAHENARLRALLQTQQDTIHQMAEYNRLLSQRMAAYASEI
NRLKALVAKLQRMQFGKSSEKLRAKTERQIPFSRAIYATQALGCSDCSIKAILNS"
misc_feature complement(<81908..81970)
/locus_tag="CP0095"
/note="Transposase C of IS166 homeodomain; Region:
LZ_Tnp_IS66; pfam13007"
/db_xref="CDD:463771"
gene complement(82115..82504)
/locus_tag="CP0097"
/db_xref="GeneID:1238201"
CDS complement(82115..82504)
/locus_tag="CP0097"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858230.2"
/db_xref="GeneID:1238201"
/translation="MTLPVFITVIADHDKPQPSGCLLESQGSLCPICRQRITHETGWN
VHHKVKKVMGAVKNYLTLSCYIQIAIDSYTVVKPALSKRAYKGLSGVPGNRYAPFLGE
GSPAMNCPYPTNIQNERNVLESAYNPL"
mobile_element 82435..82651
/note="partial"
/mobile_element_type="insertion sequence:IS91"
gene 82466..82654
/locus_tag="CP0096"
/db_xref="GeneID:1238202"
CDS 82466..82654
/locus_tag="CP0096"
/codon_start=1
/transl_table=11
/product="IS91 ORF2"
/protein_id="NP_858229.2"
/db_xref="GeneID:1238202"
/translation="MVCNYRYKNRQCHCLSGGYMARSAKSRKRKPASQRSKLPRYVVK
LHEDDFFDEEDAEVLRFD"
mobile_element 82676..83499
/note="partial"
/mobile_element_type="insertion sequence:ISSfl1"
gene complement(82691..83080)
/locus_tag="CP0098"
/db_xref="GeneID:1238146"
CDS complement(82691..83080)
/locus_tag="CP0098"
/codon_start=1
/transl_table=11
/product="ISSfl1 ORF2"
/protein_id="NP_858231.1"
/db_xref="GeneID:1238146"
/translation="MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSG
RALRNELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIAT
RYDKTARNYLAMVKLGCIRLFYQRLRN"
misc_feature complement(82712..>83080)
/locus_tag="CP0098"
/note="IS5 family transposase; Region: transpos_IS5_3;
NF033580"
/db_xref="CDD:468097"
gene complement(83086..83625)
/locus_tag="CP0099"
/db_xref="GeneID:1238149"
CDS complement(83086..83625)
/locus_tag="CP0099"
/codon_start=1
/transl_table=11
/product="ISSfl1 ORF1"
/protein_id="NP_858232.1"
/db_xref="GeneID:1238149"
/translation="MQSRFFTILRSNRHNLCGDLQQGMVHKSDSDELSALRAENARII
KPLLPPEPATPRAGRPWAEHRKIINGMFWVLCSSAPWRDLPERYGAWKTVYNRFNRWS
KSGVINIIFNRLLSLLDANGFIDWSATALDGSNIRALKCAAGAQKNIPISTEIMGRVA
LAAVLAPKSIWQQTEVASR"
misc_feature complement(<83149..83502)
/locus_tag="CP0099"
/note="IS5 family transposase; Region: transpos_IS5_3;
NF033580"
/db_xref="CDD:468097"
gene complement(83645..84118)
/locus_tag="CP0100"
/db_xref="GeneID:1238203"
CDS complement(83645..84118)
/locus_tag="CP0100"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858233.1"
/db_xref="GeneID:1238203"
/translation="MSWLISQCAHQCTDNKKTETDAIYDKVRSSYLLSCILKKNKNVG
LILHAPSFVSVSEKIARIVMANYSRNWSNSELASAVLMSESSLKRRMYKEVGSISTFV
HKIKLTEAIRKLRRTNTPISVISSELGYSSPSYFSKVFFKYLKTYPQNIRKKNGR"
misc_feature complement(83648..>83899)
/locus_tag="CP0100"
/note="AraC-type DNA-binding domain and AraC-containing
proteins [Transcription]; Region: AraC; COG2207"
/db_xref="CDD:441809"
mobile_element complement(84223..85586)
/note="partial"
/mobile_element_type="insertion sequence:ISSfl2"
gene 84369..85565
/locus_tag="CP0101"
/db_xref="GeneID:1238094"
CDS 84369..85565
/locus_tag="CP0101"
/codon_start=1
/transl_table=11
/product="ISSfl2 ORF"
/protein_id="NP_858234.1"
/db_xref="GeneID:1238094"
/translation="MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE
NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG
EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIL
GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR
LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP
VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN
KALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTF
YTPQGS"
misc_feature 84405..85541
/locus_tag="CP0101"
/note="IS110 family transposase; Region: transpos_IS110;
NF033542"
/db_xref="CDD:468073"
gene complement(85560..85979)
/locus_tag="CP0102"
/db_xref="GeneID:1238204"
CDS complement(85560..85979)
/locus_tag="CP0102"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858235.1"
/db_xref="GeneID:1238204"
/translation="MKKQIFINNKPPVVPYSGTHAKIFKYIEIPLPFFYFIYTSGEPF
HISVQNTVIYVSKYNGIFINKLVPFSLLFDRDISVLQRRDICVVRFTSEEISEHNVLF
DHDIERLKKISKAQLISPDYVLIDFSSGGPIKLSSML"
gene complement(86204..86844)
/locus_tag="CP0104"
/pseudo
/db_xref="GeneID:3170837"
misc_feature complement(86204..86844)
/locus_tag="CP0104"
/note="Similar to Shigella flexneri orf, conserved
hypothetical protein ref: NP_085259.1 (212 aa). BLAST with
identity of 99% in 211 aa. This CDS contains an in-frame
stop codon. The sequence has been checked and is believed
to be correct."
/pseudo
mobile_element 86999..88329
/mobile_element_type="insertion sequence:IS2"
gene complement(87010..87915)
/locus_tag="CP0105"
/db_xref="GeneID:1238117"
CDS complement(87010..87915)
/locus_tag="CP0105"
/note="IS2 OrfB; forms an overlapping reading frame with
orfA; may form a fusion protein OrfAB due to ribosomal
frameshifting; in some cases OrfB is itself expressed;
both OrfA and OrfAB bind terminal inverted repeats"
/codon_start=1
/transl_table=11
/product="insertion element IS2 transposase InsD"
/protein_id="NP_858238.1"
/db_xref="GeneID:1238117"
/translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS
RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL
LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW
AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE
PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL
GYRSPREYLRQRACNGLSDNRCLEI"
misc_feature complement(87013..87915)
/locus_tag="CP0105"
/note="IS2 transposase TnpB; Reviewed; Region: PRK09409"
/db_xref="CDD:181829"
gene complement(87873..88283)
/locus_tag="CP0106"
/db_xref="GeneID:1238104"
CDS complement(87873..88283)
/locus_tag="CP0106"
/note="IS2 OrfA; forms an overlapping reading frame with
orfB; may form a fusion protein OrfAB due to ribosomal
frameshifting; both OrfA and OrfAB bind terminal inverted
repeats"
/codon_start=1
/transl_table=11
/product="insertion sequence 2 OrfA protein"
/protein_id="NP_858239.1"
/db_xref="GeneID:1238104"
/translation="MIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPG
MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL
GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE"
misc_feature complement(87876..88238)
/locus_tag="CP0106"
/note="IS2 repressor TnpA; Reviewed; Region: PRK09413"
/db_xref="CDD:181833"
mobile_element 88330..89573
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene complement(88353..89171)
/locus_tag="CP0107"
/db_xref="GeneID:1238156"
CDS complement(88353..89171)
/locus_tag="CP0107"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858240.1"
/db_xref="GeneID:1238156"
/translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET
YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ
TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL
KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA"
misc_feature complement(88380..>89171)
/locus_tag="CP0107"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
gene complement(89207..89509)
/locus_tag="CP0108"
/db_xref="GeneID:1238154"
CDS complement(89207..89509)
/locus_tag="CP0108"
/codon_start=1
/transl_table=11
/product="IS600 ORF1"
/protein_id="NP_858241.1"
/db_xref="GeneID:1238154"
/translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW
VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR"
misc_feature complement(89237..89509)
/locus_tag="CP0108"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
mobile_element complement(89574..89883)
/note="partial"
/mobile_element_type="insertion sequence:ISSfl3"
gene complement(90030..90515)
/locus_tag="CP0109"
/db_xref="GeneID:1238124"
CDS complement(90030..90515)
/locus_tag="CP0109"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858242.1"
/db_xref="GeneID:1238124"
/translation="MGCVTAPEPLSSFHQVAEFVSSEAVLDDWLKQKELKNQAIGATR
TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
Q"
misc_feature complement(90048..>90404)
/locus_tag="CP0109"
/note="Predicted N-acetyltransferase YhbS [General
function prediction only]; Region: yhbS; COG3153"
/db_xref="CDD:442387"
gene complement(90503..90787)
/locus_tag="CP0110"
/db_xref="GeneID:3170830"
CDS complement(90503..90787)
/locus_tag="CP0110"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858243.2"
/db_xref="GeneID:3170830"
/translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
misc_feature complement(90509..90751)
/locus_tag="CP0110"
/note="Uncharacterized conserved protein, DUF1778 family
[Function unknown]; Region: COG4453"
/db_xref="CDD:443551"
gene 91689..91853
/locus_tag="CP0111"
/db_xref="GeneID:1238244"
CDS 91689..91853
/locus_tag="CP0111"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858244.1"
/db_xref="GeneID:1238244"
/translation="MTLTTTALNGSSSRRFEGCVWTPPLISHTALHPTSRHWMHSWHT
YAGNAEIPGL"
mobile_element 92075..94808
/mobile_element_type="insertion sequence:ISSfl4"
gene complement(92107..93708)
/locus_tag="CP0112"
/db_xref="GeneID:1238079"
CDS complement(92107..93708)
/locus_tag="CP0112"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF3"
/protein_id="NP_858245.1"
/db_xref="GeneID:1238079"
/translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
PSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLPADA
YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
RVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE
VIEKLNDWPSNQVHELLPWNFSSVK"
misc_feature complement(93313..93594)
/locus_tag="CP0112"
/note="Transposase C of IS166 homeodomain; Region:
LZ_Tnp_IS66; pfam13007"
/db_xref="CDD:463771"
misc_feature complement(92170..93366)
/locus_tag="CP0112"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
gene complement(93705..94055)
/locus_tag="CP0113"
/db_xref="GeneID:1238163"
CDS complement(93705..94055)
/locus_tag="CP0113"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF2"
/protein_id="NP_858246.1"
/db_xref="GeneID:1238163"
/translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF
VFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDR
TAWHPDITRDKTRE"
misc_feature complement(<93843..94028)
/locus_tag="CP0113"
/note="IS66 family insertion sequence element accessory
protein TnpB; Region: IS66_TnpB; NF033819"
/db_xref="CDD:411392"
gene complement(94052..94726)
/locus_tag="CP0114"
/db_xref="GeneID:1238164"
CDS complement(94052..94726)
/locus_tag="CP0114"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF1"
/protein_id="NP_858247.1"
/db_xref="GeneID:1238164"
/translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI
HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE
FKVRLAKQALQPGAVVARIAREHDINNNLLVKWKSQYEDGLLSDDDIQECMPVPVALT
DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE
MKGGIR"
misc_feature complement(94109..94693)
/locus_tag="CP0114"
/note="IS66-like element accessory protein TnpA; Region:
IS66_access_TnpA; NF038385"
/db_xref="CDD:439678"
gene 95295..96749
/gene="ospC3"
/locus_tag="CP0115"
/db_xref="GeneID:1238024"
CDS 95295..96749
/gene="ospC3"
/locus_tag="CP0115"
/note="probably secreted by the Mxi-Spa secretion
machinery; function unknown"
/codon_start=1
/transl_table=11
/product="OspC3"
/protein_id="NP_858248.1"
/db_xref="GeneID:1238024"
/translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSK
FNFTKQDVAEMEKMKNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKVN
SGDTMLDNAMKSKDSKMIDFLLKNGAILGKRFEI"
misc_feature 95865..96740
/gene="ospC3"
/locus_tag="CP0115"
/note="Shigella flexneri OspC protein; Region:
Shigella_OspC; pfam06128"
/db_xref="CDD:283728"
mobile_element complement(97023..97446)
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene 97087..97389
/locus_tag="CP0116"
/db_xref="GeneID:1238090"
CDS 97087..97389
/locus_tag="CP0116"
/codon_start=1
/transl_table=11
/product="IS600 ORF1"
/protein_id="NP_858249.1"
/db_xref="GeneID:1238090"
/translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR"
misc_feature 97087..97359
/locus_tag="CP0116"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 97417..98151
/locus_tag="CP0117"
/db_xref="GeneID:1238170"
CDS 97417..98151
/locus_tag="CP0117"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858250.1"
/db_xref="GeneID:1238170"
/translation="MKRCVGYLVYIRTRETYGTRRLQTELADNGIIVGRDRLARLRKE
LRLHCKQKRKFRATTNSDHNLPVTPNLLNQNFTPTAPNQVWVADITYVATREGWLYLA
GVKDVYTCEIVGYAMGERMMKELTGKALFMALRSQRLPAGLIHHTDRGSQYCAYDYRV
IQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFKSRDEAISVIREYIEIFY
NRQRRHSRLGNISPAAFREKYHQMAA"
misc_feature <97441..98124
/locus_tag="CP0117"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element complement(97445..98194)
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene 98573..98995
/locus_tag="CP0118"
/db_xref="GeneID:1238206"
CDS 98573..98995
/locus_tag="CP0118"
/codon_start=1
/transl_table=11
/product="IS150 ORF B"
/protein_id="NP_858251.1"
/db_xref="GeneID:1238206"
/translation="MVDCFDGKVVSWSLSTRPDAELVNTMLDSAVETLNAGERPVIHS
DRGGHYRWPGWLERVNAAGLIRSMSRKGCSPDNAACEGFFGRLKTEMYYGRKWSGITP
EKFMQQVDAYIRWYNERRIKLSLGAVSPKMYRQQCGLE"
misc_feature <98576..98980
/locus_tag="CP0118"
/note="Transposase InsO and inactivated derivatives
[Mobilome: prophages, transposons]; Region: Tra5; COG2801"
/db_xref="CDD:442053"
mobile_element 99219..99443
/note="partial"
/mobile_element_type="insertion sequence:IS21"
gene 99455..100231
/locus_tag="CP0119"
/db_xref="GeneID:3170833"
CDS 99455..100231
/locus_tag="CP0119"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_858252.2"
/db_xref="GeneID:3170833"
/translation="MAEWLGEIQKRVITVCDREADIWHYLYYKVSHGQRGACCTESPA
GRGTRQALRTAGSPGNRRKPHAECDAKRRAGSPSGPDVHQLQRSQHKKSRQQRPGAPA
HVCLLPGAGRGRCLLASADVRKSGECRRCTTYCQPLRATLADRGIPQGVEKWWYMESL
RMQTRDNLERMVVILAFIAVRVLGLRQGGVSEETQNDSCEKILTPTEWKLLWVKLEGK
PLPVQAPTLKWAWGDGMTANAQVVPVGASCGMAGQTSGYG"
misc_feature <99455..100144
/locus_tag="CP0119"
/note="IS4 family transposase; Region: transpos_IS4_3;
NF033590"
/db_xref="CDD:468099"
mobile_element 100290..101663
/mobile_element_type="insertion sequence:ISSfl2"
gene complement(100321..101517)
/locus_tag="CP0120"
/db_xref="GeneID:1238095"
CDS complement(100321..101517)
/locus_tag="CP0120"
/codon_start=1
/transl_table=11
/product="ISSfl2 ORF"
/protein_id="NP_858253.1"
/db_xref="GeneID:1238095"
/translation="MTESSDYESVLVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE
NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG
EAKTDARNAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIR
GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR
LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP
VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN
KALKRALFLSAFTALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTF
YTPQGS"
misc_feature complement(100345..101481)
/locus_tag="CP0120"
/note="IS110 family transposase; Region: transpos_IS110;
NF033542"
/db_xref="CDD:468073"
gene complement(101709..102713)
/locus_tag="CP0121"
/db_xref="GeneID:1238074"
CDS complement(101709..102713)
/locus_tag="CP0121"
/codon_start=1
/transl_table=11
/product="IS100 ORF1"
/protein_id="NP_858254.1"
/db_xref="GeneID:1238074"
/translation="MVTFETVMEIKILHKQGMSSRTIARELGLSRNTVKRYLQAKSEP
PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
PRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGSTVDVETANRHGLRWLHDVA
NQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENLVSFDNPVTLFVPLIMGC
"
misc_feature complement(101802..102686)
/locus_tag="CP0121"
/note="IS21 family transposase; Region: transpos_IS21;
NF033546"
/db_xref="CDD:468077"
mobile_element complement(101749..102800)
/note="partial"
/mobile_element_type="insertion sequence:IS100"
gene 104066..104845
/gene="ipaJ"
/locus_tag="CP0122"
/db_xref="GeneID:3170828"
CDS 104066..104845
/gene="ipaJ"
/locus_tag="CP0122"
/codon_start=1
/transl_table=11
/product="IpaJ, invasion plasmid antigen"
/protein_id="NP_858255.2"
/db_xref="GeneID:3170828"
/translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
gene complement(105792..106721)
/gene="virB"
/locus_tag="CP0123"
/db_xref="GeneID:1237991"
CDS complement(105792..106721)
/gene="virB"
/locus_tag="CP0123"
/codon_start=1
/transl_table=11
/product="transcriptional activator VirB"
/protein_id="NP_858256.1"
/db_xref="GeneID:1237991"
/translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
misc_feature complement(106077..106622)
/gene="virB"
/locus_tag="CP0123"
/note="ParB/RepB/Spo0J family partition protein; Region:
parB_part; TIGR00180"
/db_xref="CDD:272946"
misc_feature complement(105813..106178)
/gene="virB"
/locus_tag="CP0123"
/note="ParB family; Region: ParB; pfam08775"
/db_xref="CDD:430210"
gene complement(106938..107174)
/gene="acp"
/locus_tag="CP0124"
/db_xref="GeneID:1238255"
CDS complement(106938..107174)
/gene="acp"
/locus_tag="CP0124"
/codon_start=1
/transl_table=11
/product="Acp, putative acyl carrier protein"
/protein_id="NP_858257.1"
/db_xref="GeneID:1238255"
/translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
ISFEFNLRIDESTLEHIITIGDLISVVKNSTKSI"
misc_feature complement(106947..107174)
/gene="acp"
/locus_tag="CP0124"
/note="Phosphopantetheine attachment site; Region:
PP-binding; cl09936"
/db_xref="CDD:447865"
gene complement(107178..109079)
/gene="ipaA"
/locus_tag="CP0125"
/db_xref="GeneID:1238056"
CDS complement(107178..109079)
/gene="ipaA"
/locus_tag="CP0125"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858258.1"
/db_xref="GeneID:1238056"
/translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
HQNGLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKAFNHTPDN
SDGIGSDLLTTSSQERSANNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANIRNYVTETNADTIDKNHAI
YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
KVLKNINKD"
misc_feature complement(108297..108935)
/gene="ipaA"
/locus_tag="CP0125"
/note="SipA N-terminal domain; Region: SipA; cl19731"
/db_xref="CDD:418630"
misc_feature complement(107325..107390)
/gene="ipaA"
/locus_tag="CP0125"
/note="SipA vinculin binding site; Region: SipA_VBS;
pfam17985"
/db_xref="CDD:407829"
misc_feature complement(107187..107252)
/gene="ipaA"
/locus_tag="CP0125"
/note="SipA vinculin binding site; Region: SipA_VBS;
pfam17985"
/db_xref="CDD:407829"
gene complement(109088..110086)
/gene="ipaD"
/locus_tag="CP0126"
/db_xref="GeneID:1238053"
CDS complement(109088..110086)
/gene="ipaD"
/locus_tag="CP0126"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858259.1"
/db_xref="GeneID:1238053"
/translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
TMLNDTLHNIRTTNQALKKELSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSRH
EYPINKDARELLHSAPKEAELDGDQMISHRELWAKIANSINDINEQYLKVYEHAVSSY
TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVNSLKKALEELKEKYKDKPLYPANNTV
SQEQANKWLTELGGTIGKVSQKNGGYVVSINMTPIDNMLKSLDNLGGNGEVVLDNAKY
QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
misc_feature complement(109097..110086)
/gene="ipaD"
/locus_tag="CP0126"
/note="Type III secretion systems tip complex components;
Region: T3SS_TC; cl05827"
/db_xref="CDD:414561"
gene complement(110137..111228)
/gene="ipaC"
/locus_tag="CP0127"
/db_xref="GeneID:1238054"
CDS complement(110137..111228)
/gene="ipaC"
/locus_tag="CP0127"
/codon_start=1
/transl_table=11
/product="IpaC, secreted by the Mxi-Spa secretion
machinery, required for entry into epithelial cells"
/protein_id="NP_858260.2"
/db_xref="GeneID:1238054"
/translation="MEIQNTKPTQILYTDISTKQTQSSSETQKSQNYQQIAAHIPLNV
GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDRSEMSHTLTPENTLDISSL
SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
AVTQVGITGIGAKKTHSGISDQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
QTNSSTKFLGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRTYELNTLSAQQKQ
NIGRATMETSAVAGNISTSGGRYASALEEEEQLISQASSKQAEEASQVSKEASQATNQ
LIQKLLNIIDSINQSKNSTASQIAGNIRA"
misc_feature complement(110140..111228)
/gene="ipaC"
/locus_tag="CP0127"
/note="IpaC/SipC family type III secretion system needle
tip complex protein; Region: PRK15373"
/db_xref="CDD:185271"
gene complement(111248..112990)
/gene="ipaB"
/locus_tag="CP0128"
/db_xref="GeneID:1238055"
CDS complement(111248..112990)
/gene="ipaB"
/locus_tag="CP0128"
/codon_start=1
/transl_table=11
/product="IpaB, secreted by the Mxi-Spa secretion
machinery, required for entry into epithelial cells"
/protein_id="NP_858261.1"
/db_xref="GeneID:1238055"
/translation="MHNVSTTTTGFPLAKILASTELGDNTIQAANDAANKLFSLTIAD
LTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
IQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGS
VASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQAN
RTDVAKAILQQTTA"
misc_feature complement(111251..112990)
/gene="ipaB"
/locus_tag="CP0128"
/note="type III secretion system needle tip complex
protein SipB; Region: PRK15374"
/db_xref="CDD:185272"
gene complement(112996..113463)
/gene="ipgC"
/locus_tag="CP0129"
/db_xref="GeneID:1238043"
CDS complement(112996..113463)
/gene="ipgC"
/locus_tag="CP0129"
/codon_start=1
/transl_table=11
/product="IpgC, cytoplasmic chaperone for IpaB and IpaC"
/protein_id="NP_858262.1"
/db_xref="GeneID:1238043"
/translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
misc_feature complement(113008..113454)
/gene="ipgC"
/locus_tag="CP0129"
/note="type III secretion system translocator chaperone
SicA; Region: PRK15331; cl30292"
/db_xref="CDD:357168"
misc_feature complement(order(113116..113118,113125..113130,
113137..113142,113149..113151,113218..113223,
113227..113232,113239..113244,113251..113253,
113323..113325,113329..113334,113341..113346))
/gene="ipgC"
/locus_tag="CP0129"
/note="putative protein binding surface [polypeptide
binding]; other site"
/db_xref="CDD:276809"
misc_feature complement(113272..113346)
/gene="ipgC"
/locus_tag="CP0129"
/note="TPR repeat [structural motif]; Region: TPR repeat"
/db_xref="CDD:276809"
misc_feature complement(113167..113259)
/gene="ipgC"
/locus_tag="CP0129"
/note="TPR repeat [structural motif]; Region: TPR repeat"
/db_xref="CDD:276809"
misc_feature complement(113068..113154)
/gene="ipgC"
/locus_tag="CP0129"
/note="TPR repeat [structural motif]; Region: TPR repeat"
/db_xref="CDD:276809"
gene complement(113520..114146)
/gene="ipgB1"
/locus_tag="CP0130"
/db_xref="GeneID:1238045"
CDS complement(113520..114146)
/gene="ipgB1"
/locus_tag="CP0130"
/note="secreted by the Mxi-Spa machinery, function
unknown"
/codon_start=1
/transl_table=11
/product="protein IpgB1"
/protein_id="NP_858263.1"
/db_xref="GeneID:1238045"
/translation="MQILNKILPQVEFAIPRPSFDSLSRNKLVKKILSVFNLKQRFPQ
KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTTYVSSMINRSIDEMAIHNGV
VLTSDNKRNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
misc_feature complement(113556..114014)
/gene="ipgB1"
/locus_tag="CP0130"
/note="IpaB/EvcA family; Region: IpaB_EvcA; pfam03278"
/db_xref="CDD:281295"
gene complement(114162..114551)
/gene="ipgA"
/locus_tag="CP0131"
/db_xref="GeneID:1238046"
CDS complement(114162..114551)
/gene="ipgA"
/locus_tag="CP0131"
/codon_start=1
/transl_table=11
/product="chaperone IpgA"
/protein_id="NP_858264.1"
/db_xref="GeneID:1238046"
/translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
PDELIESLYEFLFCIKLTIANITSEVN"
misc_feature complement(114165..114521)
/gene="ipgA"
/locus_tag="CP0131"
/note="Tir chaperone protein (CesT) family; Region: CesT;
cl08444"
/db_xref="CDD:415540"
gene complement(114564..116048)
/gene="icsB"
/locus_tag="CP0132"
/db_xref="GeneID:1238057"
CDS complement(114564..116048)
/gene="icsB"
/locus_tag="CP0132"
/codon_start=1
/transl_table=11
/product="IcsB, invasion protein"
/protein_id="NP_858265.1"
/db_xref="GeneID:1238057"
/translation="MILKISNFIDASNTKGPIRVEDTEHGPILIAQKFNLKDLFFRTL
STINAKINSQILNEQLKNYRLENQKSLLLFLNTLASEKSAESAFAAYEAAKNSIQHSF
TGRDIKLMLNTAERFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISHNLFGLDE
TNMSKFICKKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
NDVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMTRVLNELKTEATDKKEE
IIEKSIKIIDYYNSLKSPDLGTKLYIHDLLQINKLLLNNSHSNI"
gene 116362..117978
/gene="ipgD"
/locus_tag="CP0133"
/db_xref="GeneID:1238042"
CDS 116362..117978
/gene="ipgD"
/locus_tag="CP0133"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858266.1"
/db_xref="GeneID:1238042"
/translation="MHITNLGLHQVSFQSGDSYKGAEETGKHKGVSVISYQRVKNGER
NKGIEALNRLYLQNQTSLTGKSLLFARDRAEVFCEAIKLAGGDTSKIKAMMERLDTYK
LGEVNKRHINELNKVISEEIRAQLGIKNKKELQTKIKQIFTDYLNNKNWGPVDKNISH
HGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESDHIANMWLSKVVDDEGKE
IFSGIRHGVISAYGLKKNSSERAVAARNKAEELVSAALYSRPELLSQALSGKTVDLKI
VSTSLLTPTSLTGGEESMLKDQVNALKGLNSKRGEPTKLLIRNSDGLLKEVSVNLKVV
TFNFGVNELALKMGLGWRNVDKLNDESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
DVIYLANQIKEIVTKKLQKNDNGEPYKLSQRMTLLAYTIGAVPCWNCKSGKDRTGMQD
AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
LPLSSLELSYSERIGDPKIWNMVKGYSSFV"
misc_feature 116362..117975
/gene="ipgD"
/locus_tag="CP0133"
/note="Enterobacterial virulence protein IpgD; Region:
IpgD; cl19613"
/db_xref="CDD:302951"
gene 117988..118350
/gene="ipgE"
/locus_tag="CP0134"
/db_xref="GeneID:1238041"
CDS 117988..118350
/gene="ipgE"
/locus_tag="CP0134"
/codon_start=1
/transl_table=11
/product="IpgE, cytoplasmic chaperone for IpgD"
/protein_id="NP_858267.1"
/db_xref="GeneID:1238041"
/translation="MEDLADVICRALGIPLIDIDDQAIMLDDDVLIYIEKEGDSINLL
CPFCALPENINDLIYALSLNYSEKICLATDDEGGNLIARLDLTGINEFEDVYVNTEYY
ISRVRWLKDEFARRMKGY"
misc_feature 117988..118335
/gene="ipgE"
/locus_tag="CP0134"
/note="type III secretion system chaperone; Region:
PRK15202"
/db_xref="CDD:237922"
gene 118350..118808
/gene="ipgF"
/locus_tag="CP0135"
/db_xref="GeneID:1238040"
CDS 118350..118808
/gene="ipgF"
/locus_tag="CP0135"
/codon_start=1
/transl_table=11
/product="periplasmic protein IpgF"
/protein_id="NP_858268.1"
/db_xref="GeneID:1238040"
/translation="MSRFVFILLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
FNKSAVNVNNNGSKDYGIMQINDFHSKRLREMGYSEEMLISHPCLSVHYAAKLLNEFM
MMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYRRYLRIAAESKQNNRRI"
misc_feature 118350..118805
/gene="ipgF"
/locus_tag="CP0135"
/note="lysozyme-like domains; Region: Lyz-like; cl00222"
/db_xref="CDD:469668"
misc_feature order(118473..118475,118539..118547,118554..118556,
118638..118640,118692..118697)
/gene="ipgF"
/locus_tag="CP0135"
/note="putative sugar binding site [chemical binding];
other site"
/db_xref="CDD:381603"
gene 118817..119932
/gene="mxiG"
/locus_tag="CP0136"
/db_xref="GeneID:1238032"
CDS 118817..119932
/gene="mxiG"
/locus_tag="CP0136"
/codon_start=1
/transl_table=11
/product="MxiG protein"
/protein_id="NP_858269.1"
/db_xref="GeneID:1238032"
/translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
EFGNDNFPENIIPVTDSKSDGIIYLTISKDNICQFSDEKGEQIDINSQFNSFEYDGIS
FHLKNMREDKSRGHILNGMYKNHSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
RYGIVNTGQCNYILAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQRFP
FINLYVLNLVSDKAELLVFLSKERNSSKDTELDKLKNALIVEFPYIKNIKFNYLSDHN
ARGDAKGIFTKVNVQYKEICENNKVTYSVREELTDEKLELINRLISEHKNIYGDQYIE
FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
misc_feature 118859..119914
/gene="mxiG"
/locus_tag="CP0136"
/note="Type III secretion system protein PrgH-EprH (PrgH);
Region: PrgH; cl12363"
/db_xref="CDD:448444"
gene 119940..120191
/gene="mxiH"
/locus_tag="CP0137"
/db_xref="GeneID:1238256"
CDS 119940..120191
/gene="mxiH"
/locus_tag="CP0137"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiH"
/protein_id="NP_858270.1"
/db_xref="GeneID:1238256"
/translation="MSVTVPNDDWTLSSLSETFDDGTQTLQGELTLALDKLAKNPSNP
QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
misc_feature 119961..120188
/gene="mxiH"
/locus_tag="CP0137"
/note="Type III secretion needle MxiH, YscF, SsaG, EprI,
PscF, EscF; Region: T3SS_needle_F; cl09641"
/db_xref="CDD:447757"
gene 120204..120497
/gene="mxiI"
/locus_tag="CP0138"
/db_xref="GeneID:1238257"
CDS 120204..120497
/gene="mxiI"
/locus_tag="CP0138"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiI"
/protein_id="NP_858271.1"
/db_xref="GeneID:1238257"
/translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
VSQIMEMVSNPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
misc_feature 120270..120494
/gene="mxiI"
/locus_tag="CP0138"
/note="type III secretion system inner rod subunit SctI;
Region: T3SS_SctI; NF038054"
/db_xref="CDD:411646"
gene 120503..121228
/gene="mxiJ"
/locus_tag="CP0139"
/db_xref="GeneID:1238031"
CDS 120503..121228
/gene="mxiJ"
/locus_tag="CP0139"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiJ"
/protein_id="NP_858272.1"
/db_xref="GeneID:1238031"
/translation="MIRYKGFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEVKSEFLTNEVIYLFLG
MAVLVVILLVWAFKTGWFKRNKI"
misc_feature 120554..121084
/gene="mxiJ"
/locus_tag="CP0139"
/note="type III secretion apparatus lipoprotein, YscJ/HrcJ
family; Region: III_secr_YscJ; TIGR02544"
/db_xref="CDD:274190"
gene 121225..121752
/gene="mxiK"
/locus_tag="CP0140"
/db_xref="GeneID:1238030"
CDS 121225..121752
/gene="mxiK"
/locus_tag="CP0140"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiK"
/protein_id="NP_858273.1"
/db_xref="GeneID:1238030"
/translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
ISKQGEAAIRSGFWHLIAWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
QYAKRHFTGIQTSCL"
misc_feature 121255..121749
/gene="mxiK"
/locus_tag="CP0140"
/note="type III secretion apparatus protein OrgA/MxiK;
Region: OrgA_MxiK; TIGR02555"
/db_xref="CDD:131606"
gene 121694..122389
/gene="mxiN"
/locus_tag="CP0141"
/db_xref="GeneID:1238027"
CDS 121694..122389
/gene="mxiN"
/locus_tag="CP0141"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiN"
/protein_id="NP_858274.2"
/db_xref="GeneID:1238027"
/translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
KAICVIKEATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHKKLRQ
IAEDLLKENPVND"
misc_feature 121757..>122260
/gene="mxiN"
/locus_tag="CP0141"
/note="oxygen-regulated invasion protein OrgB; Region:
PRK15322"
/db_xref="CDD:185222"
gene 122382..122789
/gene="mxiL"
/locus_tag="CP0142"
/db_xref="GeneID:1238029"
CDS 122382..122789
/gene="mxiL"
/locus_tag="CP0142"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiL"
/protein_id="NP_858275.1"
/db_xref="GeneID:1238029"
/translation="MINQINASNALQQRLNSEEVVNLNERLSSSQSFDEDIIYEIMQY
FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
SIYNNIDFYIKTTTFDSLISVFEAGREADDSTW"
gene 122773..123201
/gene="mxiM"
/locus_tag="CP0143"
/db_xref="GeneID:1238028"
CDS 122773..123201
/gene="mxiM"
/locus_tag="CP0143"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiM"
/protein_id="NP_858276.2"
/db_xref="GeneID:1238028"
/translation="MIRHGSNKLKIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
misc_feature 122854..123198
/gene="mxiM"
/locus_tag="CP0143"
/note="Shigella Pilot protein MxiM; Region:
lipocalin_MxiM; cd14493"
/db_xref="CDD:381188"
misc_feature order(122854..122865,122872..122874,122878..122880,
122938..122940,122944..122946,122953..122955,
122998..123000,123004..123006,123013..123015,
123019..123021,123118..123132,123136..123153)
/gene="mxiM"
/locus_tag="CP0143"
/note="MixD binding site [polypeptide binding]; other
site"
/db_xref="CDD:381188"
misc_feature order(122866..122868,122878..122880,122932..122934,
122938..122940,122953..122955,122959..122961,
122965..122967,122986..122988,122992..122994,
122998..123000,123004..123006,123019..123021,
123025..123027,123103..123105,123109..123111,
123115..123117,123121..123123,123148..123150,
123154..123156,123160..123162,123172..123174,
123178..123180,123184..123186)
/gene="mxiM"
/locus_tag="CP0143"
/note="ligand binding cavity [chemical binding]; other
site"
/db_xref="CDD:381188"
gene 123331..123963
/gene="mxiE"
/locus_tag="CP0144"
/db_xref="GeneID:1238033"
CDS 123331..123963
/gene="mxiE"
/locus_tag="CP0144"
/codon_start=1
/transl_table=11
/product="AraC-like family protein MxiE"
/protein_id="NP_858277.1"
/db_xref="GeneID:1238033"
/translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLV
LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVF
LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
misc_feature 123406..123945
/gene="mxiE"
/locus_tag="CP0144"
/note="AraC family transcriptional regulator InvF; Region:
PRK15340"
/db_xref="CDD:185240"
gene 123950..125650
/gene="mxiD"
/locus_tag="CP0145"
/db_xref="GeneID:1238034"
CDS 123950..125650
/gene="mxiD"
/locus_tag="CP0145"
/codon_start=1
/transl_table=11
/product="outermembrane protein MxiD"
/protein_id="NP_858278.1"
/db_xref="GeneID:1238034"
/translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKLTLLVGLIWYKDGNAL
YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
NNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
VKGNDQQIQIIRDIITQLDIAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
LVGERNSSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIGNVFKYKTSNISN
IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
"
misc_feature 123953..125647
/gene="mxiD"
/locus_tag="CP0145"
/note="EscC/YscC/HrcC family type III secretion system
outer membrane ring protein; Region: PRK15339"
/db_xref="CDD:237948"
gene 125669..126736
/gene="mxiC"
/locus_tag="CP0146"
/db_xref="GeneID:1238035"
CDS 125669..126736
/gene="mxiC"
/locus_tag="CP0146"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein"
/protein_id="NP_858279.1"
/db_xref="GeneID:1238035"
/translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
LDRDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVELLTKIINEIISGSEKSVNAG
INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
QLLLTLLYIFQYPSESEQILTSVIEVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
EIAINILRELVTSAYKKELSR"
misc_feature 125717..126727
/gene="mxiC"
/locus_tag="CP0146"
/note="YopN/LcrE/InvE/MxiC type III secretion system
gatekeeper; Region: PRK15338"
/db_xref="CDD:237947"
gene 126749..128809
/gene="mxiA"
/locus_tag="CP0147"
/db_xref="GeneID:1238036"
CDS 126749..128809
/gene="mxiA"
/locus_tag="CP0147"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein MxiA"
/protein_id="NP_858280.1"
/db_xref="GeneID:1238036"
/translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
GTFDIDNSHDSSLAMIENLDAISSETVPLILLFAENKINANDMEGLIERIRSQFFIDY
GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
LKTI"
misc_feature 126749..128806
/gene="mxiA"
/locus_tag="CP0147"
/note="EscV/YscV/HrcV family type III secretion system
export apparatus protein; Region: PRK15337"
/db_xref="CDD:237946"
gene 128822..129223
/gene="spa15"
/locus_tag="CP0148"
/db_xref="GeneID:1238004"
CDS 128822..129223
/gene="spa15"
/locus_tag="CP0148"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein Spa15"
/protein_id="NP_858281.1"
/db_xref="GeneID:1238004"
/translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
VIKDDYVHDGIVFAEILHEFYQRMEILNGVL"
misc_feature 128834..129220
/gene="spa15"
/locus_tag="CP0148"
/note="Class IB type III secretion system chaperone
protein, similar to Shigella flexneri Spa15; Region:
T3SC_IB_Spa15-like; cd17035"
/db_xref="CDD:409319"
misc_feature order(128861..128863,128870..128878,128888..128908,
128912..128935,128978..128980,128984..128986,
129008..129013,129020..129022,129098..129103,
129122..129124,129176..129181,129188..129190)
/gene="spa15"
/locus_tag="CP0148"
/note="polypeptide substrate binding site [polypeptide
binding]; other site"
/db_xref="CDD:409319"
misc_feature order(129029..129034,129038..129043,129053..129055,
129083..129085,129089..129100)
/gene="spa15"
/locus_tag="CP0148"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:409319"
gene 129227..130519
/gene="spa47"
/locus_tag="CP0149"
/db_xref="GeneID:1237998"
CDS 129227..130519
/gene="spa47"
/locus_tag="CP0149"
/note="Invasion protein InvC; necessary for efficient
entry of S.typhimurium into cultured epithelial cells.
Probable catalytic subunit of a protein translocase"
/codon_start=1
/transl_table=11
/product="ATP synthase SpaL"
/protein_id="NP_858282.1"
/db_xref="GeneID:1237998"
/translation="MSYTKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
IVARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGIKVIDSLLTCGEGQRMGIFAS
AGCGKTFLMNMLIEHSGADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
QKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIEELRTIIDFGEYKPGENA
SQDKIYNKISVVESFLKQDYRLGFTYEQTMELIGETIR"
misc_feature 129236..130516
/gene="spa47"
/locus_tag="CP0149"
/note="FliI/YscN family ATPase; Region: PRK08149"
/db_xref="CDD:236166"
gene 130612..130950
/gene="spa13"
/locus_tag="CP0150"
/db_xref="GeneID:1238258"
CDS 130612..130950
/gene="spa13"
/locus_tag="CP0150"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein Spa13"
/protein_id="NP_858283.1"
/db_xref="GeneID:1238258"
/translation="MEALDKRIIYFLQLENDLEPVGAQSVSQLFNTRRKIAIVKKHII
QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
SQEDMKYGIR"
gene 130937..131815
/gene="spa32"
/locus_tag="CP0151"
/db_xref="GeneID:1238001"
CDS 130937..131815
/gene="spa32"
/locus_tag="CP0151"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein Spa32"
/protein_id="NP_858284.1"
/db_xref="GeneID:1238001"
/translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
NKNNSTGYNEQSEEEC"
gene 131944..132690
/gene="spa33"
/locus_tag="CP0152"
/db_xref="GeneID:1238000"
CDS 131944..132690
/gene="spa33"
/locus_tag="CP0152"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein Spa33"
/protein_id="NP_858285.1"
/db_xref="GeneID:1238000"
/translation="MCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSS
VFSIPELSDKITFRITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDSLHHL
LEFCLGSSNVRLATLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSES
NGESEHTEVSLALFNYDDINVKVDFILLEKNMTINELKMYVENELFKFPDDIVKHVNI
KVNGSLVGHGELVSIEDGYGIEISSWMVKE"
misc_feature <132181..132678
/gene="spa33"
/locus_tag="CP0152"
/note="YscQ/HrcQ family type III secretion apparatus
protein; Region: PRK08158"
/db_xref="CDD:181259"
gene 132695..133345
/gene="spaP"
/locus_tag="CP0153"
/db_xref="GeneID:1238003"
CDS 132695..133345
/gene="spaP"
/locus_tag="CP0153"
/note="part of a type III secretory system probably
involved in invasion into eukaryotic cells"
/codon_start=1
/transl_table=11
/product="surface presentation of antigens protein SpaP"
/protein_id="NP_858286.1"
/db_xref="GeneID:1238003"
/translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQY
LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
FVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINIPA"
misc_feature 132695..133342
/gene="spaP"
/locus_tag="CP0153"
/note="EscR/YscR/HrcR family type III secretion system
export apparatus protein; Region: spaP; PRK12796"
/db_xref="CDD:237209"
gene 133360..133620
/gene="spa9"
/locus_tag="CP0154"
/db_xref="GeneID:1238259"
CDS 133360..133620
/gene="spa9"
/locus_tag="CP0154"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein Spa9"
/protein_id="NP_858287.1"
/db_xref="GeneID:1238259"
/translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLSIGLLQTVTQLQE
QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
misc_feature 133363..133605
/gene="spa9"
/locus_tag="CP0154"
/note="Type III secretory pathway, EscS/YscS component
[Intracellular trafficking, secretion, and vesicular
transport]; Region: EscS; COG4794"
/db_xref="CDD:443822"
gene 133620..134390
/gene="spa29"
/locus_tag="CP0155"
/db_xref="GeneID:1238002"
CDS 133620..134390
/gene="spa29"
/locus_tag="CP0155"
/codon_start=1
/transl_table=11
/product="Mxi-Spa secretion machinery protein Spa29"
/protein_id="NP_858288.2"
/db_xref="GeneID:1238002"
/translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
misc_feature 133638..134384
/gene="spa29"
/locus_tag="CP0155"
/note="type III secretion protein SpaR/YscT/HrcT; Region:
fliR_like_III; TIGR01401"
/db_xref="CDD:130468"
gene 134397..135425
/gene="spa40"
/locus_tag="CP0156"
/db_xref="GeneID:1237999"
CDS 134397..135425
/gene="spa40"
/locus_tag="CP0156"
/note="Required for surface presentation of invasion
plasmid antigens; required for invasion and for secretion
of the three ipa proteins"
/codon_start=1
/transl_table=11
/product="surface presentation of antigens protein SpaS"
/protein_id="NP_858289.1"
/db_xref="GeneID:1237999"
/translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
SQVFSSVDGLYLIWGRLFKDIILFFLAFSILVIILDFVIEFILYMKDMMMDKQEIKRE
YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
LEQVENTH"
misc_feature 134397..135422
/gene="spa40"
/locus_tag="CP0156"
/note="EscU/YscU/HrcU family type III secretion system
export apparatus switch protein; Region: PRK08156"
/db_xref="CDD:236168"
gene complement(136257..136982)
/locus_tag="CP0157"
/db_xref="GeneID:1238171"
CDS complement(136257..136982)
/locus_tag="CP0157"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858290.1"
/db_xref="GeneID:1238171"
/translation="MCRVPGVSRSGYYDRVQHAPSDRKQSDERLKLEIKVAHIRTRET
YGTRRLQTELADNGIIVGRDRLARLRKELRLHCKQKRKFRATTSSDHNLPVTPNLLNQ
NFTPTAPNQVWVADITYVATREGWLYLAGVKDVYTCEIVGYAMGERMTKELTGKALFM
ALRSQHPPAGLIHHSARGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMEIFWGTL
KNESLSHYRFKSRDISSAYGKTD"
misc_feature complement(136287..>136982)
/locus_tag="CP0157"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element 136287..137384
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene complement(137018..137320)
/locus_tag="CP0158"
/db_xref="GeneID:1238088"
CDS complement(137018..137320)
/locus_tag="CP0158"
/codon_start=1
/transl_table=11
/product="IS600 ORF1"
/protein_id="NP_858291.1"
/db_xref="GeneID:1238088"
/translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFAQESLKNTR"
misc_feature complement(137048..137320)
/locus_tag="CP0158"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
mobile_element complement(137385..137637)
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene 137406..137594
/locus_tag="CP0159"
/db_xref="GeneID:1238207"
CDS 137406..137594
/locus_tag="CP0159"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858292.1"
/db_xref="GeneID:1238207"
/translation="MESFWGTLKNESLSHYRFKSRDEAISVIREYIEIFYNRQRRHSR
LGNISPAAFRIKYYQMTA"
misc_feature <137406..137567
/locus_tag="CP0159"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
gene 137606..137770
/locus_tag="CP0160"
/db_xref="GeneID:1238245"
CDS 137606..137770
/locus_tag="CP0160"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858293.1"
/db_xref="GeneID:1238245"
/translation="MVVSAIASTPQAMCAVTDRAEPRQPDGCKLKTAPVRPGVAARSA
EYVCSEDLFY"
mobile_element 137666..138128
/note="partial"
/mobile_element_type="insertion sequence:IS1294"
gene 137785..137973
/locus_tag="CP0161"
/db_xref="GeneID:1238246"
CDS 137785..137973
/locus_tag="CP0161"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858294.1"
/db_xref="GeneID:1238246"
/translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
LERRGDTAALTRLQDTGG"
gene complement(137953..138309)
/locus_tag="CP0162"
/db_xref="GeneID:1238247"
CDS complement(137953..138309)
/locus_tag="CP0162"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858295.1"
/db_xref="GeneID:1238247"
/translation="MSGRVKTRCTQSQSGRRFSCVAIHRSVAFFPQDGQARLPHELVT
YLTWGHSGLSQMYMLHAQYPRAAGQHFCDSLNLDIAQTARIQEGCPALVGREQTFQRA
GSKSGQHEDGLTPGIL"
mobile_element 138185..139354
/note="partial"
/mobile_element_type="insertion sequence:IS1294"
gene 138320..139185
/locus_tag="CP0163"
/pseudo
/db_xref="GeneID:3170829"
misc_feature 138320..139185
/locus_tag="CP0163"
/note="Similar to Shigella flexneri IS1294 transposase
ref: NP_085231.1 (399 aa). BLAST with identity of 98% in
286 aa. This CDS has been truncated. The sequence has been
checked and is believed to be correct."
/pseudo
gene complement(139297..139590)
/locus_tag="CP0165"
/db_xref="GeneID:1238210"
CDS complement(139297..139590)
/locus_tag="CP0165"
/codon_start=1
/transl_table=11
/product="IS3 ORF2"
/protein_id="NP_858298.1"
/db_xref="GeneID:1238210"
/translation="MRSGWYTWCQRRTGISPRQQFRQHCDSVVLAAAFTRSKQRYGAP
RLTDELRAQGYHFNVKTVAASLRRQGLRAKASRKFTYRKLKNQTIPLSTPYAT"
misc_feature complement(<139345..>139587)
/locus_tag="CP0165"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element complement(139353..139587)
/note="partial"
/mobile_element_type="insertion sequence:IS3"
gene complement(139651..139866)
/locus_tag="CP0166"
/db_xref="GeneID:1238109"
CDS complement(139651..139866)
/locus_tag="CP0166"
/codon_start=1
/transl_table=11
/product="IS3 ORF1"
/protein_id="NP_858299.1"
/db_xref="GeneID:1238109"
/translation="MTHMTKTVSTSKKTRKQNSPEFCSEALKLAERIGVAAAARELSL
YESQLYAWRSKLQQQMTSSERESELPA"
misc_feature complement(<139654..139833)
/locus_tag="CP0166"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
mobile_element complement(139718..139922)
/note="partial"
/mobile_element_type="insertion sequence:IS3"
gene complement(139920..140324)
/locus_tag="CP0167"
/db_xref="GeneID:1238138"
CDS complement(139920..140324)
/locus_tag="CP0167"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858300.2"
/db_xref="GeneID:1238138"
/translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTRAGCRVYGICGTTSTLHVAG
RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
gene complement(140876..141592)
/locus_tag="CP0168"
/db_xref="GeneID:1238137"
CDS complement(140876..141592)
/locus_tag="CP0168"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858301.1"
/db_xref="GeneID:1238137"
/translation="MNDNSLLRNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
VIFELLILKQYFILPLSLSFIISSLVISIIIRIYGRIFSVSCFSDIPFVREHRIKLIM
AGFLVYFWFFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
LIFNTEQSGFYEINDVYVRK"
gene complement(142609..142983)
/locus_tag="CP0170"
/db_xref="GeneID:1238211"
CDS complement(142609..142983)
/locus_tag="CP0170"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858303.2"
/db_xref="GeneID:1238211"
/translation="MDDRIQAGKADMAACTDEADEPVLGAERTGKGYLEQTMERGKTQ
RLAEMAAANSDVPMMKNVAKTIGKRLYGILNAMRHGVSNGNAEALNSKIRLLRIKAKG
YRNRERFKLGVMFHYGKLNIAF"
misc_feature complement(142636..>142833)
/locus_tag="CP0170"
/note="ISL3 family transposase; Region: transpos_ISL3;
NF033550"
/db_xref="CDD:468079"
gene 142682..143110
/locus_tag="CP0169"
/db_xref="GeneID:1238248"
CDS 142682..143110
/locus_tag="CP0169"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858302.2"
/db_xref="GeneID:1238248"
/translation="MAFILSSLILLFSASAFPFDTPWRMAFRIPYNLFPIVLATFFIM
GTSLLAAAISASRCVFPRSMVCSRYPLPVLSAPSTGSSASSVHAAISAFPAWIRSSIY
RCAATGSEFPLPDDDFQQEDADVHSEPPRESWRLNFLRKR"
mobile_element 143062..144368
/mobile_element_type="insertion sequence:IS629"
gene 143116..143442
/locus_tag="CP0171"
/db_xref="GeneID:1238110"
CDS 143116..143442
/locus_tag="CP0171"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858304.1"
/db_xref="GeneID:1238110"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF
DRLWKK"
misc_feature 143119..143406
/locus_tag="CP0171"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 143657..144064
/locus_tag="CP0172"
/db_xref="GeneID:1238212"
CDS 143657..144064
/locus_tag="CP0172"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858305.1"
/db_xref="GeneID:1238212"
/translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLALHTAA"
misc_feature 143657..>144046
/locus_tag="CP0172"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
gene 144033..144326
/locus_tag="CP0173"
/db_xref="GeneID:1238213"
CDS 144033..144326
/locus_tag="CP0173"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858306.1"
/db_xref="GeneID:1238213"
/translation="MYRWPCTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIH
RKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGNDDLAA"
misc_feature <144051..144323
/locus_tag="CP0173"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
gene complement(144329..144559)
/locus_tag="CP0174"
/db_xref="GeneID:1238214"
CDS complement(144329..144559)
/locus_tag="CP0174"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_858307.1"
/db_xref="GeneID:1238214"
/translation="MLNKRAFFGAFLIFWGFKFLSMDMNAGYIRAARIHLPNAVEKIA
FDRFHVAKQPGEVVDKTRQNEPPRFSWRVFYL"
misc_feature complement(<144365..>144508)
/locus_tag="CP0174"
/note="ISL3 family transposase; Region: transpos_ISL3;
NF033550"
/db_xref="CDD:468079"
mobile_element complement(144712..145094)
/note="partial"
/mobile_element_type="insertion sequence:IS91"
gene complement(144804..145160)
/locus_tag="CP0175"
/db_xref="GeneID:1238173"
CDS complement(144804..145160)
/locus_tag="CP0175"
/codon_start=1
/transl_table=11
/product="IS91 orf"
/protein_id="NP_858308.1"
/db_xref="GeneID:1238173"
/translation="MLPRFADIFQQGNRWLNWLEKQPVQMSRLEHYAGQDEIGLRYNS
HRTKREENLVMSGDEFMERFSWHVADKGFRMVIRGPESGEAAITGRCGVRHNGDSEKN
GEANHKERDVSAVTEG"
misc_feature complement(144933..>145106)
/locus_tag="CP0175"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
mobile_element complement(145091..145613)
/note="partial"
/mobile_element_type="insertion sequence:IS91"
gene complement(145160..145582)
/locus_tag="CP0176"
/db_xref="GeneID:1238106"
CDS complement(145160..145582)
/locus_tag="CP0176"
/codon_start=1
/transl_table=11
/product="IS91 ORF2"
/protein_id="NP_858309.1"
/db_xref="GeneID:1238106"
/translation="MACDYRYKNRQYHCLSGSYMARSAKPRKRKPAPQRSKLLRYVVK
LHEDDFFDEEEAEVLRFDNFDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEI
ARCTEREFATIPAGINADGMYCPECGTVHWPDGVIPPF"
gene complement(146245..146484)
/locus_tag="CP0177"
/db_xref="GeneID:3170825"
CDS complement(146245..146484)
/locus_tag="CP0177"
/codon_start=1
/transl_table=11
/product="reverse transcriptase"
/protein_id="NP_858310.2"
/db_xref="GeneID:3170825"
/translation="MPQGGVISPLLSNIILNEFDQYLNKRYLSGKARKDRWYWNHSIQ
RGRSTAVKENWQWKPAVAYCCYADDCVPRRRVLGT"
misc_feature complement(<146272..>146484)
/locus_tag="CP0177"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:477363"
misc_feature complement(146473..146475)
/locus_tag="CP0177"
/note="nucleic acid binding site [nucleotide binding];
other site"
/db_xref="CDD:238185"
gene complement(146631..146873)
/locus_tag="CP0178"
/db_xref="GeneID:1238215"
CDS complement(146631..146873)
/locus_tag="CP0178"
/codon_start=1
/transl_table=11
/product="IS3 ORF2"
/protein_id="NP_858311.1"
/db_xref="GeneID:1238215"
/translation="MCSGYHFNVKTVAASLRRQELSAKASQKFSPISYRAHGLPVSEN
LLTQDFYASGPNQKWAGDITYYYSSPTAGKHGAPGY"
misc_feature complement(<146679..>146864)
/locus_tag="CP0178"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element complement(146678..147046)
/note="partial"
/mobile_element_type="insertion sequence:IS3"
gene complement(146846..147409)
/locus_tag="CP0179"
/db_xref="GeneID:1238118"
CDS complement(146846..147409)
/locus_tag="CP0179"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858312.1"
/db_xref="GeneID:1238118"
/translation="MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHHDKRSARA
QRDDWLKKEILRVYDENHQVYAVRKVWHQLLREGIRVARCTVARLMAVMGLAGVLRGK
KVHTTVSRKAVAAGDRVNRHQGNVPRTPGGPQRLVYVVSAADKDKHTSAVPSALRQRC
PQGFYPVQRYGAPRLTDELCALVTTLT"
misc_feature complement(<147047..147352)
/locus_tag="CP0179"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
mobile_element complement(147045..147788)
/note="partial"
/mobile_element_type="insertion sequence:IS629"
gene complement(147516..147734)
/locus_tag="CP0180"
/db_xref="GeneID:3170827"
CDS complement(147516..147734)
/locus_tag="CP0180"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858313.2"
/db_xref="GeneID:3170827"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCIL
ETLRVWVRQHERDTGGGEVGSPPLNVSV"
misc_feature complement(<147534..147734)
/locus_tag="CP0180"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene complement(147913..149115)
/gene="virA"
/locus_tag="CP0181"
/db_xref="GeneID:1237992"
CDS complement(147913..149115)
/gene="virA"
/locus_tag="CP0181"
/codon_start=1
/transl_table=11
/product="VirA protein"
/protein_id="NP_858314.2"
/db_xref="GeneID:1237992"
/translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDILLKIITFG
IYSPHETLAEKHSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
CCTSIIPNDDYFHVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
LGINEFIDSKKELQMLSYNQVNKIINSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
FAIISPDV"
misc_feature complement(147919..149028)
/gene="virA"
/locus_tag="CP0181"
/note="EspG protein; Region: EspG; pfam06872"
/db_xref="CDD:399689"
gene 149644..152952
/gene="icsA/virG"
/locus_tag="CP0182"
/db_xref="GeneID:1238021"
CDS 149644..152952
/gene="icsA/virG"
/locus_tag="CP0182"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858315.1"
/db_xref="GeneID:1238021"
/translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
LGGPIAFATPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
LSVINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGFTNINAGILKMGTVEAMTRTA
GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEIAGHASGITYVAVTNEG
GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
YMDAWLQYSWFNNTVKGDGLTGEKYSSKGITGALEAGYIYPTIRWTAHNNIDNALYLN
PQVQITRHGVKANDYIEHNGTMVTSSGGNNIQAKLGLRTSLISQSCIDKETLRKFEPF
LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
YRDTQGILGVKYTF"
misc_feature 149986..>151299
/gene="icsA/virG"
/locus_tag="CP0182"
/note="Uncharacterized conserved protein, contains a
C-terminal beta-barrel porin domain [Function unknown];
Region: COG4625"
/db_xref="CDD:443664"
misc_feature 151525..152949
/gene="icsA/virG"
/locus_tag="CP0182"
/note="outer membrane autotransporter barrel domain;
Region: autotrans_barl; TIGR01414"
/db_xref="CDD:273608"
mobile_element 153533..154838
/mobile_element_type="insertion sequence:IS629"
gene 153587..153913
/locus_tag="CP0183"
/db_xref="GeneID:1238159"
CDS 153587..153913
/locus_tag="CP0183"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858316.1"
/db_xref="GeneID:1238159"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF
DRLWKK"
misc_feature 153590..153877
/locus_tag="CP0183"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 154128..154796
/locus_tag="CP0184"
/db_xref="GeneID:1238064"
CDS 154128..154796
/locus_tag="CP0184"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858317.1"
/db_xref="GeneID:1238064"
/translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD
RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLVYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGND
DLAA"
misc_feature 154128..154793
/locus_tag="CP0184"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
gene 155137..156789
/gene="ushA"
/locus_tag="CP0185"
/db_xref="GeneID:1237993"
CDS 155137..156789
/gene="ushA"
/locus_tag="CP0185"
/note="catalyzes the degradation of periplasmic
UDP-glucose to uridine, glucose-1-phosphate and inorganic
phosphate; specific for uridine nucleotides"
/codon_start=1
/transl_table=11
/product="bifunctional UDP-sugar
hydrolase/5'-nucleotidase"
/protein_id="NP_858318.2"
/db_xref="GeneID:1237993"
/translation="MIPLKKNITLIMFTLSLLTGNPAIAYETDKVYKITVLHTNDHHG
HFWRNNHGEYGLSSQKTLVDNIRQKVINNGGSVLLLSGGDINTGVPESDLQKAEPDIR
GMNLIGYDAMAVGNHEFDNPLNILRQQEKWATFPFLSANIYQKSTGRRLFSPWKIFIR
QNLKIAVIGLTTDDTAKTGNSEYFTDIEFRQPAAEARSVIDELNQQEKPDIIIAATHM
GHYDNGESGSNAPGDVEMARSLPTGSLAMIVGGHSQAPVCMASDNKKQWNYIPGTTCV
PDKQNGIWIVQAHEWGKYVGQADFEFCNGTMKLVNYQLHPVNLKMRITREDGKTEFSF
YTPEITEDPQMLSLLTPFQNKGKAQLDVKVGVVNGRLEGDRSKVRFVQTSMGHLILSA
LTERIDADFAVVSGGEIRDSIESGNITYKDILKVQPFGNTVVSIDLTGKEVADYLATV
AQMKPDSGAYPQFLNTSFVVKKGKIEMLKIKGKSVDLNKKYRMTTFSFNATGGDGYPR
IDNRPGYINTGFIDAEVLIEYIRKHSPLDAASYEPKGEVSWQ"
misc_feature 155137..156786
/gene="ushA"
/locus_tag="CP0185"
/note="bifunctional UDP-sugar hydrolase/5'-nucleotidase
periplasmic precursor; Reviewed; Region: ushA; PRK09558"
/db_xref="CDD:236566"
gene 156758..156943
/locus_tag="CP0186"
/db_xref="GeneID:1238250"
CDS 156758..156943
/locus_tag="CP0186"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858319.1"
/db_xref="GeneID:1238250"
/translation="MNQKVKSVGSDNVIDDHHVFFADSRCDFVKVVSAYVCDMGMQLL
YFVFLLLPVVAEFNLAA"
gene complement(157296..157622)
/locus_tag="CP0187"
/db_xref="GeneID:1238082"
CDS complement(157296..157622)
/locus_tag="CP0187"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858320.1"
/db_xref="GeneID:1238082"
/translation="MPGASNAAMCKITETIKKWRIHRSTAESLLDFARRYNAIVRGWI
EYYGKFWSRNFSYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLALVRKQYPKLFAHWYL
LRASNE"
misc_feature complement(157398..>157610)
/locus_tag="CP0187"
/note="conserved catalytic core domain of RNA-dependent
RNA polymerase (RdRp) from the positive-sense
single-stranded RNA [(+)ssRNA] viruses and closely related
viruses; Region: ps-ssRNAv_RdRp-like; cl40470"
/db_xref="CDD:477363"
gene complement(157675..158478)
/locus_tag="CP0188"
/db_xref="GeneID:1238217"
CDS complement(157675..158478)
/locus_tag="CP0188"
/codon_start=1
/transl_table=11
/product="reverse transcriptase"
/protein_id="NP_858321.1"
/db_xref="GeneID:1238217"
/translation="MKDRNGSGAKGLPHCADGAAATTGDNADGRTAVKSAKPFPVSKR
QVWEAYKRVKANRGAAGIDGQTLAGFDENVTDNLYKLWNRMASGSYMPQAVRRVDIPK
ADGGVRPLGIPAVSDRIAQMVVKQILEPVLEPLFHADSYGYRPGKSAHQAIAQARKRC
WKFDWVVEVDIKGFFDDIDHDLLLKTVQHHTQARWVVMYIERRLKAPVQMPDGAMLAR
GRGTPQGGVISPLLSNLFLHYAFDMWMQRQFPGVPFERYADDVVCHSRI"
misc_feature complement(<157681..158352)
/locus_tag="CP0188"
/note="group II intron reverse transcriptase/maturase;
Region: group_II_RT_mat; TIGR04416"
/db_xref="CDD:275209"
misc_feature complement(order(157699..157704,157708..157710,
157804..157809,157954..157971))
/locus_tag="CP0188"
/note="putative active site [active]"
/db_xref="CDD:238828"
misc_feature complement(order(157702..157704,157807..157809,
157954..157971))
/locus_tag="CP0188"
/note="putative NTP binding site [chemical binding]; other
site"
/db_xref="CDD:238828"
misc_feature complement(157804..157806)
/locus_tag="CP0188"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:238828"
gene complement(158491..158691)
/locus_tag="CP0189"
/db_xref="GeneID:1238218"
CDS complement(158491..158691)
/locus_tag="CP0189"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858322.1"
/db_xref="GeneID:1238218"
/translation="MVLRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKG
NCYDNAPMESFWGTLKNGTGTE"
misc_feature complement(158509..>158691)
/locus_tag="CP0189"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
mobile_element 158508..158706
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene 159087..159836
/gene="phoN1"
/locus_tag="CP0190"
/db_xref="GeneID:1238007"
CDS 159087..159836
/gene="phoN1"
/locus_tag="CP0190"
/codon_start=1
/transl_table=11
/product="PhoN1, periplasmic non specific acid
ohosphatase"
/protein_id="NP_858323.1"
/db_xref="GeneID:1238007"
/translation="MKRQLFTLSIVGVFSLNTFASFPPGNDVTTKPDLYYLTNDNAID
SLALLPPPPQIGSIAFLNDQAMYEKGRLLRNTERGKLAAEDANLSSGGVANVFSAAFG
SPITAKDSPELHKLLTNMIEDAGDLATRSAKEYYMRIRPFAFYGVSTCNTKEQDTLSR
NGSYPSGHTSIGWATALVLSEINPARQDTILKRGYELGDSRVICGYHWQSDVDAARIV
GSAIVATLHSNPVFQAQLQKAKDEFANNQKK"
misc_feature 159153..159818
/gene="phoN1"
/locus_tag="CP0190"
/note="PAP2, bacterial acid phosphatase or class A
non-specific acid phosphatases. These enzymes catalyze
phosphomonoester hydrolysis, with optimal activity in low
pH conditions. They are secreted into the periplasmic
space, and their physiological role remains...; Region:
PAP2_acid_phosphatase; cd03397"
/db_xref="CDD:239491"
misc_feature order(159483..159485,159504..159506,159582..159590,
159687..159689,159705..159707,159717..159719)
/gene="phoN1"
/locus_tag="CP0190"
/note="active site"
/db_xref="CDD:239491"
mobile_element 159991..160913
/mobile_element_type="insertion sequence:ISSfl1"
gene complement(160006..160395)
/locus_tag="CP0191"
/db_xref="GeneID:1238147"
CDS complement(160006..160395)
/locus_tag="CP0191"
/codon_start=1
/transl_table=11
/product="ISSfl1 ORF2"
/protein_id="NP_858324.1"
/db_xref="GeneID:1238147"
/translation="MLSPGQAHESQFAQRLLDGIGVQRQNGSMKRRGHAVLADKAYSG
RALRNELKNNGIKAVIPRKSNEKMASDGRAQLDRDAYCNRNVVERCFGRLKEYRRIAT
RYDKTARNYLAIVKLGCIRLFYQRLRN"
misc_feature complement(160027..>160395)
/locus_tag="CP0191"
/note="IS5 family transposase; Region: transpos_IS5_3;
NF033580"
/db_xref="CDD:468097"
gene complement(160401..160850)
/locus_tag="CP0192"
/db_xref="GeneID:1238150"
CDS complement(160401..160850)
/locus_tag="CP0192"
/codon_start=1
/transl_table=11
/product="ISSfl1 ORF1"
/protein_id="NP_858325.1"
/db_xref="GeneID:1238150"
/translation="MARYDLPDEAWTIIKPLLPPEPATPRAGRPWAEHRKIINGMFWV
LCSSAPWRDLPERYGAWKTVYNRFNRWSKSGVINIIFNRLLSLLDANGFIDWSATALD
GSNIRALKCAAGAQKNIPISTEIMGRVALAAVLAPKSIWQQTEVASR"
misc_feature complement(<160464..160847)
/locus_tag="CP0192"
/note="IS5 family transposase; Region: transpos_IS5_3;
NF033580"
/db_xref="CDD:468097"
gene complement(160896..161276)
/locus_tag="CP0193"
/db_xref="GeneID:1238136"
CDS complement(160896..161276)
/locus_tag="CP0193"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858326.2"
/db_xref="GeneID:1238136"
/translation="MTMATINARIDDDIKNQADEVLKLMNISQTQAIAAFYQYITEQK
KLPFVITSIVKTPHDLLRESTDMLAEALAVISNLQVWTEQQDGIGKAKLMEYYRRLDA
LYCCAKEKIGLLSDNRDAELGCVP"
misc_feature complement(<161133..161276)
/locus_tag="CP0193"
/note="Antitoxin component of the RelBE or YafQ-DinJ
toxin-antitoxin module [Defense mechanisms]; Region: RelB;
COG3077"
/db_xref="CDD:442311"
gene complement(161459..161854)
/gene="stbB"
/locus_tag="CP0194"
/db_xref="GeneID:1237996"
CDS complement(161459..161854)
/gene="stbB"
/locus_tag="CP0194"
/codon_start=1
/transl_table=11
/product="plasmid stable inheritance protein"
/protein_id="NP_858327.1"
/db_xref="GeneID:1237996"
/translation="MESSDPKKRKKVVAYLHPALYPQDNLTQQTIDSLPVQMRGDFYR
QSLICGAALYSVAPRLLTLISVFFSEKITAENLVKLIEQTTGYTSTSIDISVLKNIIE
ASSENKSESITSKDDFEEQTRRNLSMLKK"
misc_feature complement(161612..161827)
/gene="stbB"
/locus_tag="CP0194"
/note="Plasmid stability protein; Region: Plasmid_stab_B;
pfam10784"
/db_xref="CDD:119304"
gene complement(161854..162813)
/gene="stbA"
/locus_tag="CP0195"
/db_xref="GeneID:1237997"
CDS complement(161854..162813)
/gene="stbA"
/locus_tag="CP0195"
/codon_start=1
/transl_table=11
/product="plasmid stable inheritance protein"
/protein_id="NP_858328.1"
/db_xref="GeneID:1237997"
/translation="MLKVSCDDGSTNVKLAWLEDGEVRTSLSGNSFKEGWNPGLFNAG
KVYNYVVDEKKYTYDLGSTAVIGTTHVSYQYSTTNLLAIHHALLTSGLQPQDVELTVT
LPVTEFFDNDNQPNEERIERKKANVLREISLNKGETFKIKKVNVMPESLPAAFESLKK
DKVNKLERSLIIDLGGTTLDCGLILGAFEGISEIRGYSEIGTSRITHTVMNALTKAST
PCNYFIADELIKNRHDNEYLQTLINDVAEIKNISHVIDREVKSLAESIRQEISTFSGM
NRIYLTGGGAELIYPHIKQYFPNLKVNKVDEPQFALVKAMVHA"
misc_feature complement(161857..162810)
/gene="stbA"
/locus_tag="CP0195"
/note="StbA protein; Region: StbA; pfam06406"
/db_xref="CDD:310773"
gene 163184..164155
/gene="yccB"
/locus_tag="CP0196"
/db_xref="GeneID:1238018"
CDS 163184..164155
/gene="yccB"
/locus_tag="CP0196"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858329.1"
/db_xref="GeneID:1238018"
/translation="MRHGLMEAACERRIPMPNWCSNRMYFPGEPAQIAEIKRLASGAV
TPLYRRATNEGIQLFLAGSAGLLQITENIRSEQCPGVTAAGRGAVSTENIAFTRWLTH
LQNGVLLDEQNCLMLHELWLQSGTGQRRWEGLPDDARETITVHFTAKRGDWCDIWGNE
DVSVWWNRLCDNVVPEKTMPFDLLTVLPTRLDVEVNGFNGGVLNGVPSAYHWYTERYG
VKWPCGYDLNISSQGENFIQVDFDTPWCQPESDVIAELSRRFSCTLEHWYAEQGCDFC
GWQLYERGELVNVLWGELEWSSPTDDDEQPEVTGPAWIVDNVAHYGG"
misc_feature 163319..163792
/gene="yccB"
/locus_tag="CP0196"
/note="Protein of unknown function (DUF1281); Region:
DUF1281; pfam06924"
/db_xref="CDD:462041"
misc_feature 163853..164095
/gene="yccB"
/locus_tag="CP0196"
/note="Ferredoxin-like domain in Api92-like protein;
Region: DUF1281_C; pfam18406"
/db_xref="CDD:436475"
gene 164152..164463
/locus_tag="CP0197"
/db_xref="GeneID:3170831"
CDS 164152..164463
/locus_tag="CP0197"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858330.2"
/db_xref="GeneID:3170831"
/translation="MKYDGDGRATARFFSDKGCRRAPLFTAPADAARHKRCLWSVSRV
RRARDGRFYRSRLVSVTVYASPSPFSDERPSSRFRGITLLSKRRRLRYSTVGLTRYRK
R"
gene 164527..165210
/gene="ycdA"
/locus_tag="CP0198"
/db_xref="GeneID:1238134"
CDS 164527..165210
/gene="ycdA"
/locus_tag="CP0198"
/codon_start=1
/transl_table=11
/product="methylase"
/protein_id="NP_858331.2"
/db_xref="GeneID:1238134"
/translation="MSRFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRQGRTIAG
DKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMSAWKNAGFSVVGHLVFTKNYT
SKAAYVGYRHECAYILAKGRPRLPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESF
THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAAN
DDWFMPEAA"
misc_feature 164527..165207
/gene="ycdA"
/locus_tag="CP0198"
/note="putative methylase; Provisional; Region: PRK13699"
/db_xref="CDD:184255"
gene 165211..165432
/gene="yceA"
/locus_tag="CP0199"
/db_xref="GeneID:1238017"
CDS 165211..165432
/gene="yceA"
/locus_tag="CP0199"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858332.1"
/db_xref="GeneID:1238017"
/translation="MNYAGHEKLRAEVAEVANAMCDLRTTMNEMERRYSFNADTLPER
LVRQTLFRANRLLMEAYTEILELDSCFKD"
gene 165429..165629
/locus_tag="CP0200"
/db_xref="GeneID:3170836"
CDS 165429..165629
/locus_tag="CP0200"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858333.2"
/db_xref="GeneID:3170836"
/translation="MRGESMYGTCETLCRALAAKYSGDTPLMLVIWSPEEIQALADGM
DISLSDHEIRTVLAHLEDIPED"
misc_feature 165444..>165626
/locus_tag="CP0200"
/note="Protein of unknown function (DUF1380); Region:
DUF1380; pfam07128"
/db_xref="CDD:429307"
gene 165663..165878
/locus_tag="CP0201"
/db_xref="GeneID:1238219"
CDS 165663..165878
/locus_tag="CP0201"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858334.1"
/db_xref="GeneID:1238219"
/translation="MEIISNVRENRQVTVPAELLETLTQIAEQALWKREWAARDHGFP
LPEYVTRRQAMVDQARSLLKNNTHEND"
misc_feature <165663..165851
/locus_tag="CP0201"
/note="Protein of unknown function (DUF1380); Region:
DUF1380; pfam07128"
/db_xref="CDD:429307"
gene 165923..166693
/gene="ycfA"
/locus_tag="CP0202"
/db_xref="GeneID:1238133"
CDS 165923..166693
/gene="ycfA"
/locus_tag="CP0202"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858335.1"
/db_xref="GeneID:1238133"
/translation="MNETLNALICRHARNLLLAQGWPEETDVDQCNPNYPGWISIYVR
LDAPRLATLLVNRHDGVLPPHLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQVSF
PYAGEWLTEDEIRAVLDAVRDAVCSVSCRGAEDARRIRAALTTSGQTLLTRQTRRFRL
VVKESDHPCWLDEDDENLPVVLDAILNRGARFSAVEMYLVSDCIEHILSSGLACDVLR
IPDEPPRRWFDRGVLREVVREARAEIRSMADALAKIRK"
gene complement(167032..167685)
/locus_tag="CP0203"
/db_xref="GeneID:1238071"
CDS complement(167032..167685)
/locus_tag="CP0203"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_858336.1"
/db_xref="GeneID:1238071"
/translation="MRFVQPRTETQQAIRALHRVRESLIRDKVKTTNQIHGFLLEFGI
SLPTGDAVIKRLSLVLAEHEIPEYLSRLLVRLHTHYLYLVEQIAELESELSQSINADD
TAQRIMTIPGVGPITASLLSSQLGDGKQFSCSRDFAASTGLVPRQYSTGGKSTLLGIS
KRGDKNLRRLLVQCARSFMMQLERQHGKLAEWVREQLNKKHSNVVACALANKLARIA"
misc_feature complement(167035..>167685)
/locus_tag="CP0203"
/note="IS110 family transposase; Region: transpos_IS110;
NF033542"
/db_xref="CDD:468073"
mobile_element 167728..169501
/note="partial"
/mobile_element_type="insertion sequence:ISSfl4"
gene complement(167760..169361)
/locus_tag="CP0204"
/db_xref="GeneID:1238174"
CDS complement(167760..169361)
/locus_tag="CP0204"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF3"
/protein_id="NP_858337.1"
/db_xref="GeneID:1238174"
/translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
PSENPIASKPESPGRESSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA
YAGYNVLYETGRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE
VIEKLNDWPSNQVHELLPWNFSSVK"
misc_feature complement(168966..169247)
/locus_tag="CP0204"
/note="Transposase C of IS166 homeodomain; Region:
LZ_Tnp_IS66; pfam13007"
/db_xref="CDD:463771"
misc_feature complement(167823..169019)
/locus_tag="CP0204"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
gene complement(169358..169708)
/locus_tag="CP0205"
/db_xref="GeneID:1238165"
CDS complement(169358..169708)
/locus_tag="CP0205"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF2"
/protein_id="NP_858338.1"
/db_xref="GeneID:1238165"
/translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF
VFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDR
TAWHPDITRDKTRE"
misc_feature complement(<169496..169681)
/locus_tag="CP0205"
/note="IS66 family insertion sequence element accessory
protein TnpB; Region: IS66_TnpB; NF033819"
/db_xref="CDD:411392"
mobile_element 169496..170461
/note="partial"
/mobile_element_type="insertion sequence:ISSfl4"
gene complement(169705..170379)
/locus_tag="CP0206"
/db_xref="GeneID:1238166"
CDS complement(169705..170379)
/locus_tag="CP0206"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF1"
/protein_id="NP_858339.1"
/db_xref="GeneID:1238166"
/translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI
HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE
FKVRLAKQALQPGAVVARIAREHDINNNLLVKWKSQYEDGLLSDDDIQECMPVPVALT
DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE
MKGGIR"
misc_feature complement(169762..170346)
/locus_tag="CP0206"
/note="IS66-like element accessory protein TnpA; Region:
IS66_access_TnpA; NF038385"
/db_xref="CDD:439678"
gene complement(170327..171064)
/locus_tag="CP0207"
/db_xref="GeneID:1238158"
CDS complement(170327..171064)
/locus_tag="CP0207"
/codon_start=1
/transl_table=11
/product="IS2 ORF2"
/protein_id="NP_858340.1"
/db_xref="GeneID:1238158"
/translation="MDGPRSSHTDDTDVLLGIHHVIGELPTYGYRRVWALLRRQAELD
GMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDN
GERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTD
NGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTVSAPSATSCENCPVWQQ
SRPSILMDTNDEFPDNKRYSLLPFLFA"
misc_feature complement(<170459..171061)
/locus_tag="CP0207"
/note="insertion element IS2 transposase InsD;
Provisional; Region: PRK14702"
/db_xref="CDD:237792"
mobile_element 170462..171591
/note="partial"
/mobile_element_type="insertion sequence:IS2"
gene complement(171135..171500)
/locus_tag="CP0208"
/db_xref="GeneID:1238105"
CDS complement(171135..171500)
/locus_tag="CP0208"
/note="IS2 OrfA; forms an overlapping reading frame with
orfB; may form a fusion protein OrfAB due to ribosomal
frameshifting; both OrfA and OrfAB bind terminal inverted
repeats"
/codon_start=1
/transl_table=11
/product="insertion sequence 2 OrfA protein"
/protein_id="NP_858341.2"
/db_xref="GeneID:1238105"
/translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS
QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE
YGRAKKWIAHAPLLPGDGE"
misc_feature complement(171138..171500)
/locus_tag="CP0208"
/note="IS2 repressor TnpA; Reviewed; Region: PRK09413"
/db_xref="CDD:181833"
gene complement(171972..172610)
/locus_tag="CP0209"
/db_xref="GeneID:1238132"
CDS complement(171972..172610)
/locus_tag="CP0209"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858342.1"
/db_xref="GeneID:1238132"
/translation="MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSE
LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
mobile_element complement(172791..173131)
/note="partial"
/mobile_element_type="insertion sequence:iso-IS1"
gene complement(172967..173239)
/locus_tag="CP0210"
/db_xref="GeneID:1238084"
CDS complement(172967..173239)
/locus_tag="CP0210"
/codon_start=1
/transl_table=11
/product="iso-IS1 ORF1"
/protein_id="NP_858343.1"
/db_xref="GeneID:1238084"
/translation="MATVTVHCPRCHSDEVYRHGRSCSRHERFRCRSCKRVFQLTYSY
EARKPGVKEQIVEMAHNGAGGRDTARTLKIGINTVIRTLKSSRPGG"
misc_feature complement(<172976..173218)
/locus_tag="CP0210"
/note="IS1 family transposase; Region: transpos_IS1;
NF033558"
/db_xref="CDD:468085"
mobile_element complement(173356..176109)
/mobile_element_type="insertion sequence:ISSfl4"
gene 173438..174112
/locus_tag="CP0211"
/db_xref="GeneID:1238167"
CDS 173438..174112
/locus_tag="CP0211"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF1"
/protein_id="NP_858344.1"
/db_xref="GeneID:1238167"
/translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI
HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE
FKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALT
DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE
MKGGIR"
misc_feature 173471..174055
/locus_tag="CP0211"
/note="IS66-like element accessory protein TnpA; Region:
IS66_access_TnpA; NF038385"
/db_xref="CDD:439678"
gene 174109..174456
/locus_tag="CP0212"
/db_xref="GeneID:1238168"
CDS 174109..174456
/locus_tag="CP0212"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF2"
/protein_id="NP_858345.1"
/db_xref="GeneID:1238168"
/translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF
VFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAW
PHPKRTERPGIRI"
misc_feature 174136..174405
/locus_tag="CP0212"
/note="IS66 family insertion sequence element accessory
protein TnpB; Region: IS66_TnpB; NF033819"
/db_xref="CDD:411392"
gene 174476..176077
/locus_tag="CP0213"
/db_xref="GeneID:1238175"
CDS 174476..176077
/locus_tag="CP0213"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF3"
/protein_id="NP_858346.1"
/db_xref="GeneID:1238175"
/translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
PSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA
YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE
VIEKLNDWPSNQVHELLPWNFSSVK"
misc_feature 174590..174871
/locus_tag="CP0213"
/note="Transposase C of IS166 homeodomain; Region:
LZ_Tnp_IS66; pfam13007"
/db_xref="CDD:463771"
misc_feature 174818..176014
/locus_tag="CP0213"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
gene 176266..176499
/locus_tag="CP0214"
/db_xref="GeneID:1238114"
CDS 176266..176499
/locus_tag="CP0214"
/codon_start=1
/transl_table=11
/product="IS100 ORF2"
/protein_id="NP_858347.1"
/db_xref="GeneID:1238114"
/translation="MLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQ
LQSLRSLSFIERNENIVLQGTSDITNPRVGICV"
misc_feature 176266..>176463
/locus_tag="CP0214"
/note="Members of the P-loop NTPase domain superfamily are
characterized by a conserved nucleotide phosphate-binding
motif, also referred to as the Walker A motif
(GxxxxGK[S/T], where x is any residue), and the Walker B
motif (hhhh[D/E], where h is a...; Region: P-loop
containing Nucleoside Triphosphate Hydrolases; cl38936"
/db_xref="CDD:476819"
mobile_element 176267..176462
/note="partial"
/mobile_element_type="insertion sequence:IS100"
gene complement(176551..176841)
/locus_tag="CP0215"
/db_xref="GeneID:1238220"
CDS complement(176551..176841)
/locus_tag="CP0215"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858348.1"
/db_xref="GeneID:1238220"
/translation="MNAHWSSKKSNFFRKNIKLLTKYLFFESQGIPDKVDIVSRLKTY
GYSISGVETDDGYKALVRAFQLHFRQKNYDGIMDAETAAILYALLEKYFPGK"
gene complement(176810..177061)
/locus_tag="CP0216"
/db_xref="GeneID:1238221"
CDS complement(176810..177061)
/locus_tag="CP0216"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858349.1"
/db_xref="GeneID:1238221"
/translation="MEPVYVILNALLDSGRFTRKLILLGLSGTFSYIFGSIVATLGMG
LVVDYLGWGATFIVLILSAVFAIIFTLMSRERSLEFEKE"
misc_feature complement(176840..>176989)
/locus_tag="CP0216"
/note="Major Facilitator Superfamily; Region: MFS;
cl28910"
/db_xref="CDD:475125"
gene 177513..177797
/locus_tag="CP0217"
/db_xref="GeneID:1238062"
CDS 177513..177797
/locus_tag="CP0217"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858350.1"
/db_xref="GeneID:1238062"
/translation="MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQA
LSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQSWADSLSTDHLLPVPR"
misc_feature 177540..177746
/locus_tag="CP0217"
/note="Predicted transcriptional regulator, contains
ribbon-helix-helix (RHH_1) domain [Transcription]; Region:
PutA1; COG3905"
/db_xref="CDD:443111"
gene 177797..178072
/locus_tag="CP0218"
/db_xref="GeneID:1238063"
CDS 177797..178072
/locus_tag="CP0218"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858351.1"
/db_xref="GeneID:1238063"
/translation="MELKWTSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLT
HPRMGEQLFQFEPREVRRIFTGEYEIRYELTGQTIYVLRLWHTRENR"
misc_feature 177797..178066
/locus_tag="CP0218"
/note="Plasmid stabilization system protein ParE
[Mobilome: prophages, transposons]; Region: ParE; COG3668"
/db_xref="CDD:442885"
gene 178125..178304
/locus_tag="CP0219"
/db_xref="GeneID:1238251"
CDS 178125..178304
/locus_tag="CP0219"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858352.1"
/db_xref="GeneID:1238251"
/translation="MLSGQIFCIPLNNLVGDKINYDEITKITARDWRQYRAPGWQITH
QKRYCQTLRVMTPTY"
mobile_element complement(178283..179050)
/mobile_element_type="insertion sequence:IS1"
gene complement(178298..178801)
/gene="insB"
/locus_tag="CP0220"
/db_xref="GeneID:1238153"
CDS complement(178298..178801)
/gene="insB"
/locus_tag="CP0220"
/codon_start=1
/transl_table=11
/product="IS1 ORF2"
/protein_id="NP_858353.1"
/db_xref="GeneID:1238153"
/translation="MSRQRTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD
EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG
WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY
LNIKHYQ"
misc_feature complement(178301..178693)
/gene="insB"
/locus_tag="CP0220"
/note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400"
/db_xref="CDD:281403"
gene 178876..179178
/locus_tag="CP0221"
/db_xref="GeneID:1238222"
CDS 178876..179178
/locus_tag="CP0221"
/codon_start=1
/transl_table=11
/product="IS1 encoded protein"
/protein_id="NP_858354.1"
/db_xref="GeneID:1238222"
/translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL
KSPSYTKSVSWQHYPAPVSPAAHFLPNGCGAPRQYNGGYGRCCRSCTGPAGETATP"
gene 179387..179605
/locus_tag="CP0222"
/db_xref="GeneID:1238223"
CDS 179387..179605
/locus_tag="CP0222"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858355.1"
/db_xref="GeneID:1238223"
/translation="MSDGYSVYKSLADNHPGITSACCWSHAGRGFANLYKASREPRAG
VELRKIAGLYRIEKLIRERPVEKIRQWR"
misc_feature <179387..>179602
/locus_tag="CP0222"
/note="Transposase IS66 family; Region: DDE_Tnp_IS66;
pfam03050"
/db_xref="CDD:427113"
gene 179624..180004
/locus_tag="CP0223"
/db_xref="GeneID:1238169"
CDS 179624..180004
/locus_tag="CP0223"
/codon_start=1
/transl_table=11
/product="ISSfl4 ORF3"
/protein_id="NP_858356.1"
/db_xref="GeneID:1238169"
/translation="MNDLFAWLEEQEPCCPPDGPLNKAINYILNRRDELSCFLGDGAV
PLDNNICERAIRPVVMGRKAWLFAGSLMAGNRAAQIMSLLETAKRNGLEPHAWLTDVL
TRLPEWPEERLAELLPLEGFTFTG"
misc_feature <179624..179938
/locus_tag="CP0223"
/note="IS66 family transposase; Region: transpos_IS66;
NF033517"
/db_xref="CDD:468053"
gene 180540..180758
/gene="ccdA"
/locus_tag="CP0224"
/db_xref="GeneID:1238060"
CDS 180540..180758
/gene="ccdA"
/locus_tag="CP0224"
/codon_start=1
/transl_table=11
/product="plasmid maintenance protein CcdA"
/protein_id="NP_858357.1"
/db_xref="GeneID:1238060"
/translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
QAENQQGMAEIARFIEMNGSFADENRDW"
misc_feature 180540..180755
/gene="ccdA"
/locus_tag="CP0224"
/note="type II toxin-antitoxin system antitoxin CcdA;
Region: PRK13710"
/db_xref="CDD:184266"
gene 180760..181065
/gene="ccdB"
/locus_tag="CP0225"
/db_xref="GeneID:1238059"
CDS 180760..181065
/gene="ccdB"
/locus_tag="CP0225"
/note="controlled cell death protein; post-segregation
toxin; toxin addiction system"
/codon_start=1
/transl_table=11
/product="plasmid maintenance protein CcdB"
/protein_id="NP_858358.3"
/db_xref="GeneID:1238059"
/translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
misc_feature 180760..181062
/gene="ccdB"
/locus_tag="CP0225"
/note="type II toxin-antitoxin system toxin CcdB; Region:
PRK13708"
/db_xref="CDD:184264"
gene 181458..183095
/gene="ipaH9.8"
/locus_tag="CP0226"
/db_xref="GeneID:1238048"
CDS 181458..183095
/gene="ipaH9.8"
/locus_tag="CP0226"
/codon_start=1
/transl_table=11
/product="invasion plasmid antigen, secreted by the
Mxi-Spa secretion machinery"
/protein_id="NP_858359.2"
/db_xref="GeneID:1238048"
/translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
HALPALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA
FEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADAT
ESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRT
LHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEF
TDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAER
EAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS"
misc_feature 181530..183050
/gene="ipaH9.8"
/locus_tag="CP0226"
/note="type III secretion system effector E3 ubiquitin
transferase SlrP; Region: PRK15370"
/db_xref="CDD:185268"
misc_feature 181692..181751
/gene="ipaH9.8"
/locus_tag="CP0226"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 181752..181811
/gene="ipaH9.8"
/locus_tag="CP0226"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 181932..182003
/gene="ipaH9.8"
/locus_tag="CP0226"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 182004..182072
/gene="ipaH9.8"
/locus_tag="CP0226"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
misc_feature 182073..182138
/gene="ipaH9.8"
/locus_tag="CP0226"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
gene 183824..184414
/gene="ospG"
/locus_tag="CP0227"
/db_xref="GeneID:1238010"
CDS 183824..184414
/gene="ospG"
/locus_tag="CP0227"
/codon_start=1
/transl_table=11
/product="protein OspG"
/protein_id="NP_858360.1"
/db_xref="GeneID:1238010"
/translation="MKITSTIIQTPFPFENNNSHAGIVTEPILGKLIGQGSTAEIFED
VNDSSALYKKYDLIGNQYNEILEMAWQESELFNAFYGDEASVVIQYGGDVYLRMLRVP
GTPLSDIDTADIPDNIESLYLQLICKLNELSIIHYDLNTGNMLYDKESESLFPIDFRN
IYAEYYAATKKDKEIIDRRLQMRTNDFYSLLNRKYL"
misc_feature 184022..>184297
/gene="ospG"
/locus_tag="CP0227"
/note="tRNA A-37 threonylcarbamoyl transferase component
Bud32 [Translation, ribosomal structure and biogenesis];
Region: Bud32; COG3642"
/db_xref="CDD:442859"
gene complement(184482..184661)
/gene="mob9"
/locus_tag="CP0228"
/db_xref="GeneID:1238224"
CDS complement(184482..184661)
/gene="mob9"
/locus_tag="CP0228"
/codon_start=1
/transl_table=11
/product="plasmid mobilization protein"
/protein_id="NP_858361.1"
/db_xref="GeneID:1238224"
/translation="MSLAGNPCVIRLVAQVCMWLKFIIRDRGGFSGGLLLFLPVCCRD
RTERILAVHTIKILR"
mobile_element 185034..186369
/note="partial"
/mobile_element_type="insertion sequence:IS4"
gene 185100..186421
/locus_tag="CP0230"
/pseudo
/db_xref="GeneID:3170832"
misc_feature 185100..186421
/locus_tag="CP0230"
/note="Similar to Shigella flexneri orf, conserved
hypothetical protein ref: NP_085397.1 (439 aa). BLAST with
identity of 77% in 438 aa. This CDS contains an in-frame
stop codon. The sequence has been checked and is believed
to be correct."
/pseudo
mobile_element 186370..187678
/mobile_element_type="insertion sequence:IS629"
gene 186424..186753
/locus_tag="CP0231"
/db_xref="GeneID:1238113"
CDS 186424..186753
/locus_tag="CP0231"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858364.1"
/db_xref="GeneID:1238113"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
ETLRVWGLRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAE
FDRLWKK"
misc_feature 186427..186717
/locus_tag="CP0231"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 186968..187636
/locus_tag="CP0232"
/db_xref="GeneID:1238070"
CDS 186968..187636
/locus_tag="CP0232"
/codon_start=1
/transl_table=11
/product="IS629 ORF2"
/protein_id="NP_858365.1"
/db_xref="GeneID:1238070"
/translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRMTISRKAVAAGD
RVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLD
ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN
GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGND
DLAA"
misc_feature 186968..187633
/locus_tag="CP0232"
/note="DDE superfamily endonuclease; Region: DDE_3;
cl46863"
/db_xref="CDD:481203"
mobile_element 187957..188285
/note="partial"
/mobile_element_type="insertion sequence:IS3"
gene 188108..188326
/locus_tag="CP0233"
/db_xref="GeneID:1238226"
CDS 188108..188326
/locus_tag="CP0233"
/codon_start=1
/transl_table=11
/product="IS3 ORF2"
/protein_id="NP_858366.1"
/db_xref="GeneID:1238226"
/translation="MAASLRRQGLRAKASRKFSPVSYRAHGLPVSENLLEQDFYASGP
NQKWAGDITYLRTDEVRLHPVSTEPHAF"
misc_feature <188120..>188302
/locus_tag="CP0233"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
gene complement(188314..191226)
/locus_tag="CP0234"
/db_xref="GeneID:1238131"
CDS complement(188314..191226)
/locus_tag="CP0234"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858367.1"
/db_xref="GeneID:1238131"
/translation="MFSKAFLRKISMFFARRKPAAMKICLYHTLNPDTIPGYKKFAQA
IATDNFVQADVRKIDTNLYRARLSIRDRLLFSLYRYHGETICLVLEYIRNHAYNTSRF
LRRNVVIDEGRLQQQPVPDPVDIATEALTYINPSHGRFHRLDKMLSFDDDQQALYEHP
LPLVIVGSAGSGKTALVLEKMKQAAGDILYLSLSSFLVEKARTLYDASGEGSEVQNID
FLSLTEFLETLRIPEGREVTFSAFSDWLPRNRAIAALGAAHTLYEEFRGVIGAVASGN
GPLSREAYLSLGIRQSLYGMEDRPTVYVLFERYIAWLKQSHQYDSNLLSHQYLSLATP
RYDVIFVDEVQDMTPVQLQLVLKTLRHPGQFLLCGDANQIVHPSFFSWSSLKSLFFRQ
QQGNDTTVNILQANYRNGHHVTALANRLLRLKQVRFSAIDRESHHFVRSCGQAEGTIR
LLDDREETKQELNAKTSLSNRVAVIVMHPEQKAQARCWFSTPLVFSVQEVKGLEYETV
ILYNIVSAARQAFDDICEGLTPADLEGEARYSRPRDRQDRSAEIYKFFTNALYVALTR
AKHNVYLVEQQVEHPLWSLLALTHQEEPLNLQEEISSRDEWQKTAHLLEKQGKQEQAD
TIRSRILQTSEMPWQIITAEDARQWKQHILAGTADKTIQLQALEYSLIYSLFPLYNAL
YREDFKPTRQPRTKTLQLLELKYFRPYSMNNPVAVLRDIERYGVDHRSPFNLTPLMSA
ARAGNIALVQLLLERGADPLLTGNDGLAAYHQVLSAAVSTPRYAQQKSAQLYTLLKPE
SLSLQVEGRLIKLDNRQMAMFLVILMQALFHTHLGSALFFSEAFSAARLAECVVHLPE
ALLPERRKRRSYISSQLSQHEVNSKNPYGKKLFLRLNHGQYILNPGLKIRKGDVWRAV
YELQSPEDLGHDLQTYLQDMSPELVDMLGGKKGFYERSEKSVGYWVGGIRRAAQKA"
misc_feature complement(189505..191022)
/locus_tag="CP0234"
/note="Superfamily I DNA and RNA helicases [Replication,
recombination and repair]; Region: COG3972"
/db_xref="CDD:443172"
misc_feature complement(189505..>190230)
/locus_tag="CP0234"
/note="DNA helicase IV [Replication, recombination and
repair]; Region: HelD; COG3973"
/db_xref="CDD:443173"
misc_feature complement(<188914..>189051)
/locus_tag="CP0234"
/note="Ankyrin repeat [Signal transduction mechanisms];
Region: ANKYR; COG0666"
/db_xref="CDD:440430"
misc_feature complement(188938..189033)
/locus_tag="CP0234"
/note="ANK repeat [structural motif]; Region: ANK repeat"
/db_xref="CDD:293786"
gene 191709..192551
/gene="shf"
/locus_tag="CP0235"
/db_xref="GeneID:1238130"
CDS 191709..192551
/gene="shf"
/locus_tag="CP0235"
/codon_start=1
/transl_table=11
/product="carbohydrate transport protein"
/protein_id="NP_858368.1"
/db_xref="GeneID:1238130"
/translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQIKWLA
ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
LPDD"
misc_feature 191805..192491
/gene="shf"
/locus_tag="CP0235"
/note="Putative catalytic NodB homology domain of a
hypothetical protein Ecf1 from Escherichia coli and
similar proteins; Region: CE4_Ecf1_like_5s; cd10969"
/db_xref="CDD:213026"
misc_feature order(191931..191936,192174..192176,192186..192188,
192312..192320)
/gene="shf"
/locus_tag="CP0235"
/note="putative active site [active]"
/db_xref="CDD:213026"
gene 192554..193642
/gene="rfbU"
/locus_tag="CP0236"
/db_xref="GeneID:1238129"
CDS 192554..193642
/gene="rfbU"
/locus_tag="CP0236"
/codon_start=1
/transl_table=11
/product="UDP-sugar hydrolase"
/protein_id="NP_858369.1"
/db_xref="GeneID:1238129"
/translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTR
KHPFRIIRQKTYLTRKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
ARQAKQDIEERFDINKTALKILTLAKHK"
misc_feature 192560..193627
/gene="rfbU"
/locus_tag="CP0236"
/note="phosphatidyl-myo-inositol mannosyltransferase;
Region: GT4_PimA-like; cd03801"
/db_xref="CDD:340831"
gene 193647..194597
/gene="virK"
/locus_tag="CP0237"
/db_xref="GeneID:1238020"
CDS 193647..194597
/gene="virK"
/locus_tag="CP0237"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858370.1"
/db_xref="GeneID:1238020"
/translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
VASIRYYYELRSLQCIEDILAIQPTLPARIHRPYLHKGGRAWSRGQYILEHYRFVQNL
PEKYSEFLFPQKSVSLVQFIGKDGEDFDIQCSPSGFDREGELMLSLFFNKIVIARLTF
SVILTQNGHTAFIGGLQGAPKNTGPDIIRCATRACYGLFPKRIIFEAFCALMKACNVS
ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYKLPTQVVRKPLSN
IASKKRSEYRKRYALLDYIHETAIRSLDAYPVNSEHYDLN"
misc_feature 193668..194564
/gene="virK"
/locus_tag="CP0237"
/note="Outer membrane protein VirK/YbjX involved in
antimicrobial peptide resistance, DUF535 family [Function
unknown]; Region: VirK; COG2990"
/db_xref="CDD:442229"
gene 194662..195606
/gene="msbB2"
/locus_tag="CP0238"
/db_xref="GeneID:1238039"
CDS 194662..195606
/gene="msbB2"
/locus_tag="CP0238"
/note="Transfers myristate or laurate, activated on ACP,
to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA"
/codon_start=1
/transl_table=11
/product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
acyltransferase"
/protein_id="NP_858371.1"
/db_xref="GeneID:1238039"
/translation="MKKYKSEFIPEFKKNYLSPVYWFTWFVLGMIAGISMFPPSFRDP
VLAKIGRWVGRLSRKARRRATINLSLCFPEKSDTEREIIVDNMFATALQSIVMMAELA
IRGPEKFQKRVFWKGLEILEEIRHNNRNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
misc_feature 194662..195603
/gene="msbB2"
/locus_tag="CP0238"
/note="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA
acyltransferase; Validated; Region: PRK08943"
/db_xref="CDD:236355"
misc_feature order(195070..195072,195079..195081,195085..195087,
195136..195147,195283..195291)
/gene="msbB2"
/locus_tag="CP0238"
/note="putative acyl-acceptor binding pocket [active]"
/db_xref="CDD:153246"
mobile_element complement(195737..196684)
/note="partial"
/mobile_element_type="insertion sequence:IS630"
gene complement(195760..196716)
/locus_tag="CP0239"
/db_xref="GeneID:1238086"
CDS complement(195760..196716)
/locus_tag="CP0239"
/codon_start=1
/transl_table=11
/product="IS630 orf"
/protein_id="NP_858372.1"
/db_xref="GeneID:1238086"
/translation="MVVSAIASTPQLHRGDRVSDVARTLCCARSSVGRWINWFTQSGV
EGLKSLPAGRARRWPFEHICTLLRELVKHSPGDFGYQRSRWSTELLAIKINEITGCQL
NAGTVRRWLPSVGIVWRRAAPTLRIRDPHKDEKMAAIHKALDECSAEHPVFYEDEVDI
HLHPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKSSALFISLL
KRLKATYRRAKTITLIVDNYIIHKSRETQSWLKENPKFRGIYQPVYSPWVNHVERLWQ
ALHDTITRNHQCRSMWQLLKKVRHFMETVSPFPGGKHGLAKV"
misc_feature complement(195805..196683)
/locus_tag="CP0239"
/note="IS630 family transposase; Region: transpos_IS630;
NF033545"
/db_xref="CDD:468076"
mobile_element 196685..197948
/mobile_element_type="insertion sequence:IS600"
gene complement(196725..197546)
/locus_tag="CP0240"
/pseudo
/db_xref="GeneID:3170834"
misc_feature complement(196725..197546)
/locus_tag="CP0240"
/note="Similar to Shigella flexneri orf, conserved
hypothetical protein ref: NP_085323.1 (272 aa). BLAST with
identity of 100% in 272 aa. This CDS contains an in-frame
stop codon. The sequence has been checked and is believed
to be correct."
/pseudo
gene complement(197582..197884)
/locus_tag="CP0242"
/db_xref="GeneID:1238160"
CDS complement(197582..197884)
/locus_tag="CP0242"
/codon_start=1
/transl_table=11
/product="IS600 ORF1"
/protein_id="NP_858375.1"
/db_xref="GeneID:1238160"
/translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQW
VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR"
misc_feature complement(197612..197884)
/locus_tag="CP0242"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 197923..198108
/gene="traD"
/locus_tag="CP0243"
/db_xref="GeneID:1238229"
CDS 197923..198108
/gene="traD"
/locus_tag="CP0243"
/codon_start=1
/transl_table=11
/product="DNA transport protein"
/protein_id="NP_858376.1"
/db_xref="GeneID:1238229"
/translation="MSVKLRLPQISESGEVVDMAAYEAWQQENHPDTWQQMQRREEVN
INVHRERGEDVEPGDDF"
misc_feature <197944..198105
/gene="traD"
/locus_tag="CP0243"
/note="conjugal transfer protein TraD; Provisional;
Region: PRK13700"
/db_xref="CDD:184256"
gene complement(198117..198515)
/gene="mvpA"
/locus_tag="CP0245"
/db_xref="GeneID:1238038"
CDS complement(198117..198515)
/gene="mvpA"
/locus_tag="CP0245"
/note="stability determinant protein"
/codon_start=1
/transl_table=11
/product="plasmid maintenance protein"
/protein_id="NP_858378.1"
/db_xref="GeneID:1238038"
/translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGKMCISSVTLMELI
YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTGQIRAELARQGRPVGPFDQMIA
GHARSRGLIIVTNNTREFERVGGLRTEDWS"
misc_feature complement(198120..198515)
/gene="mvpA"
/locus_tag="CP0245"
/note="tRNA(fMet)-specific endonuclease VapC; Region:
PRK13725"
/db_xref="CDD:184277"
misc_feature complement(order(198168..198173,198186..198191,
198213..198236,198252..198254,198261..198266,
198270..198278,198282..198287,198297..198305,
198309..198314,198321..198323,198327..198335,
198339..198353,198372..198374,198378..198386,
198390..198398,198402..198407,198414..198419,
198438..198446,198468..198500))
/gene="mvpA"
/locus_tag="CP0245"
/note="oligomeric interface [polypeptide binding]; other
site"
/db_xref="CDD:350229"
misc_feature complement(order(198168..198173,198186..198191,
198213..198236,198264..198266,198297..198299,
198303..198305,198309..198314,198321..198323,
198327..198335,198339..198353,198378..198386,
198390..198392,198414..198419,198438..198446,
198468..198500))
/gene="mvpA"
/locus_tag="CP0245"
/note="heterodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:350229"
misc_feature complement(order(198216..198218,198225..198230,
198252..198254,198261..198266,198270..198278,
198282..198287,198297..198305,198333..198335,
198345..198347,198372..198374,198381..198386,
198390..198398,198402..198407))
/gene="mvpA"
/locus_tag="CP0245"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:350229"
gene complement(198515..198742)
/gene="mvpT"
/locus_tag="CP0246"
/db_xref="GeneID:1238037"
CDS complement(198515..198742)
/gene="mvpT"
/locus_tag="CP0246"
/codon_start=1
/transl_table=11
/product="plasmid maintenance protein"
/protein_id="NP_858379.1"
/db_xref="GeneID:1238037"
/translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
ETWDEWFDGHSVSTDFMDNREQPGMQERESF"
misc_feature complement(198518..198736)
/gene="mvpT"
/locus_tag="CP0246"
/note="type II toxin-antitoxin system VapB family
antitoxin; Region: TA_anti_VapB; NF040493"
/db_xref="CDD:439718"
gene 198803..199195
/locus_tag="CP0247"
/db_xref="GeneID:1238230"
CDS 198803..199195
/locus_tag="CP0247"
/codon_start=1
/transl_table=11
/product="oriT nicking and unwinding protein"
/protein_id="NP_858380.1"
/db_xref="GeneID:1238230"
/translation="MSKGYTFMMSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGQG
AEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNRHRPGYDLTFSAPKSISMMAM
LGGDKRLIEAHNQAVDFAVRQVEASAST"
misc_feature 198827..>199192
/locus_tag="CP0247"
/note="conjugal transfer nickase/helicase TraI;
Provisional; Region: PRK13709"
/db_xref="CDD:237478"
gene 199216..200580
/locus_tag="CP0248"
/db_xref="GeneID:1238231"
CDS 199216..200580
/locus_tag="CP0248"
/codon_start=1
/transl_table=11
/product="oriT nicking and unwinding protein"
/protein_id="NP_858381.1"
/db_xref="GeneID:1238231"
/translation="MLTGNLVMALFNHDTSRDQEPQLHTHAVVTNVTQYNGEWKTLSS
DKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFS
GRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD
AAEQRAYTRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPEN
GVIERARAGIDEAISREQLIPLDREKGLFTFGIHMLDELSVRALSRDIMKQNRVTVHL
EKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIA
ADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGA
ARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVGWPEI
LRPA"
misc_feature 199216..>200565
/locus_tag="CP0248"
/note="conjugal transfer nickase/helicase TraI;
Provisional; Region: PRK14712"
/db_xref="CDD:237796"
gene 200577..204077
/locus_tag="CP0249"
/db_xref="GeneID:1238121"
CDS 200577..204077
/locus_tag="CP0249"
/note="cleaves origin of transfer and unwinds; oriT
relaxase"
/codon_start=1
/transl_table=11
/product="conjugal transfer nickase/helicase TraI"
/protein_id="NP_858382.1"
/db_xref="GeneID:1238121"
/translation="MKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTAL
SPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQV
VRISSLDSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVP
GRAEPATLPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARS
GRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAISLQKAGLHTPAQQ
AIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLLYVDVAK
GYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAATRMILE
TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDA
QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASG
DTDQLQAIAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVERALSGLE
RVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVR
DYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKVQVMVPVLNTANIRDG
ELRRLSTWENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVT
LYTPDTIRVGTGDRIRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQE
RAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQHVQVY
TDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQA
GLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGR
VKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAIT
GGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPD
LPDGKTEQAVREIAGQERDRAAITEREAALPESVLREPQRVREAVREVARENLLQERL
QQMERDMVRDLQKEKTPGGD"
misc_feature <200577..204074
/locus_tag="CP0249"
/note="conjugal transfer nickase/helicase TraI;
Provisional; Region: PRK14712"
/db_xref="CDD:237796"
gene 204097..204843
/gene="traX"
/locus_tag="CP0250"
/db_xref="GeneID:3170840"
CDS 204097..204843
/gene="traX"
/locus_tag="CP0250"
/codon_start=1
/transl_table=11
/product="conjugal transfer pilus acetylation protein
TraX"
/protein_id="NP_858383.2"
/db_xref="GeneID:3170840"
/translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
AYYLAGFPWYEGNILFAFAVAAQVLTWCTTRSGWRTAAAILLMALWGPLSGTSYGIAG
LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
misc_feature 204133..204840
/gene="traX"
/locus_tag="CP0250"
/note="conjugal transfer pilus acetylase TraX; Region:
PRK13706"
/db_xref="CDD:184262"
gene 204898..205458
/gene="finO"
/locus_tag="CP0251"
/db_xref="GeneID:1238058"
CDS 204898..205458
/gene="finO"
/locus_tag="CP0251"
/codon_start=1
/transl_table=11
/product="conjugal transfer fertility inhibition protein
FinO"
/protein_id="NP_858384.1"
/db_xref="GeneID:1238058"
/translation="MTEQKRPVLTLKRKTEGTAPVRSRKTIINVTTPPKWKVKKQKLA
EKAAREAELAAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRD
VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
YAGARLAKIRRQNRIKAELQAVLDEK"
misc_feature 204898..205452
/gene="finO"
/locus_tag="CP0251"
/note="fertility inhibition protein FinO; Region:
PRK13754"
/db_xref="CDD:184304"
gene 205589..205801
/gene="yigA"
/locus_tag="CP0252"
/db_xref="GeneID:1238102"
CDS 205589..205801
/gene="yigA"
/locus_tag="CP0252"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858385.1"
/db_xref="GeneID:1238102"
/translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
VAPRTDWQQFARKRAEHCHRRCRGRV"
gene 205985..206287
/gene="yigB"
/locus_tag="CP0253"
/db_xref="GeneID:1238232"
CDS 205985..206287
/gene="yigB"
/locus_tag="CP0253"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858386.1"
/db_xref="GeneID:1238232"
/translation="MLHYSGGLKYRWHLSDMENNMRKYIPLALFIFSWPVLSADIHGR
VVRVLDGDTIEVMDSLKAVRIRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTY"
misc_feature 206045..>206284
/gene="yigB"
/locus_tag="CP0253"
/note="Endonuclease YncB, thermonuclease family
[Replication, recombination and repair]; Region: YncB;
COG1525"
/db_xref="CDD:441134"
mobile_element 206285..207548
/mobile_element_type="insertion sequence:IS600"
gene complement(206328..207146)
/locus_tag="CP0254"
/db_xref="GeneID:1238157"
CDS complement(206328..207146)
/locus_tag="CP0254"
/codon_start=1
/transl_table=11
/product="IS600 ORF2"
/protein_id="NP_858387.1"
/db_xref="GeneID:1238157"
/translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET
YGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ
TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL
KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA"
misc_feature complement(206355..>207146)
/locus_tag="CP0254"
/note="IS3 family transposase; Region: transpos_IS3;
NF033516"
/db_xref="CDD:468052"
gene complement(207182..207484)
/locus_tag="CP0255"
/db_xref="GeneID:1238155"
CDS complement(207182..207484)
/locus_tag="CP0255"
/codon_start=1
/transl_table=11
/product="IS600 ORF1"
/protein_id="NP_858388.1"
/db_xref="GeneID:1238155"
/translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW
VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR"
misc_feature complement(207212..207484)
/locus_tag="CP0255"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 207606..207773
/locus_tag="CP0256"
/db_xref="GeneID:1238233"
CDS 207606..207773
/locus_tag="CP0256"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858389.1"
/db_xref="GeneID:1238233"
/translation="MNINQFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDAD
PVPPWIWRHRK"
misc_feature <207609..207770
/locus_tag="CP0256"
/note="Endonuclease YncB, thermonuclease family
[Replication, recombination and repair]; Region: YncB;
COG1525"
/db_xref="CDD:441134"
gene 208067..208657
/gene="yihA"
/locus_tag="CP0257"
/db_xref="GeneID:1238128"
CDS 208067..208657
/gene="yihA"
/locus_tag="CP0257"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858390.1"
/db_xref="GeneID:1238128"
/translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
AERILSSGEYWQRQKTLLTEREVSFMKGLFRIVDMKRWYLCPQVRVADIVQLNGNIRP
RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
AGIPLLRSHDARKLLQMTGEWLNTTGADQQSPEHRS"
misc_feature 208238..208567
/gene="yihA"
/locus_tag="CP0257"
/note="PDDEXK family nucleases; Region:
PDDEXK_nuclease-like; cl40440"
/db_xref="CDD:477358"
gene 208897..209157
/gene="repB"
/locus_tag="CP0258"
/db_xref="GeneID:1238260"
CDS 208897..209157
/gene="repB"
/locus_tag="CP0258"
/codon_start=1
/transl_table=11
/product="replication protein"
/protein_id="NP_858391.1"
/db_xref="GeneID:1238260"
/translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
misc_feature 208897..209151
/gene="repB"
/locus_tag="CP0258"
/note="replication regulatory protein RepA; Region:
PRK13702"
/db_xref="CDD:184258"
gene 209381..209455
/gene="tap"
/locus_tag="CP0259"
/db_xref="GeneID:1238261"
CDS 209381..209455
/gene="tap"
/locus_tag="CP0259"
/note="RepA6"
/codon_start=1
/transl_table=11
/product="leader peptide RepL"
/protein_id="NP_858392.1"
/db_xref="GeneID:1238261"
/translation="MPGKVQDFFLCSLLLRIVSAGWCD"
misc_feature 209381..209452
/gene="tap"
/locus_tag="CP0259"
/note="RepA leader peptide Tap; Region: PRK13716"
/db_xref="CDD:106657"
gene 209448..210305
/gene="repA"
/locus_tag="CP0260"
/db_xref="GeneID:1238006"
CDS 209448..210305
/gene="repA"
/locus_tag="CP0260"
/note="RepA"
/codon_start=1
/transl_table=11
/product="replication protein"
/protein_id="NP_858393.2"
/db_xref="GeneID:1238006"
/translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
YSRLATASP"
misc_feature 209448..210302
/gene="repA"
/locus_tag="CP0260"
/note="replication protein; Provisional; Region: PRK13750"
/db_xref="CDD:184300"
gene 211006..211197
/locus_tag="CP0261"
/db_xref="GeneID:1238252"
CDS 211006..211197
/locus_tag="CP0261"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858394.1"
/db_xref="GeneID:1238252"
/translation="MAENGYGLAGLGMGKVKSVNQYRLTPGFGGFTPVSHVTTACRLP
CRWRGIRIIQAAFNAFAKV"
mobile_element complement(211241..211531)
/note="partial"
/mobile_element_type="insertion sequence:IS91"
gene complement(211427..212623)
/locus_tag="CP0262"
/db_xref="GeneID:1238144"
CDS complement(211427..212623)
/locus_tag="CP0262"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858395.1"
/db_xref="GeneID:1238144"
/translation="MLSAFTPRPLKRLFTTNQCWTSFLDAGGLRDIEVEAVTKMLACG
TRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWVHL
VFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHP
HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITT
ESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLS
FRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRA
LGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGSQMRFTGLKRGYRLAEQVLMHEPLA
RMRWCG"
misc_feature complement(211487..212596)
/locus_tag="CP0262"
/note="IS91 family transposase; Region: transpos_IS91;
NF033538"
/db_xref="CDD:468069"
mobile_element complement(211527..212940)
/note="partial"
/mobile_element_type="insertion sequence:IS1294"
gene complement(212633..212821)
/locus_tag="CP0263"
/db_xref="GeneID:1238253"
CDS complement(212633..212821)
/locus_tag="CP0263"
/codon_start=1
/transl_table=11
/product="IS1294 transposase"
/protein_id="NP_858396.1"
/db_xref="GeneID:1238253"
/translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
LERRGDTAALTRLQDTGG"
gene 212967..213134
/locus_tag="CP0264"
/db_xref="GeneID:1238234"
CDS 212967..213134
/locus_tag="CP0264"
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="NP_858397.1"
/db_xref="GeneID:1238234"
/translation="MDEKKLKALAAELAKGLKTEADLNQFSRMQTKLTVETVLNAELT
DHLGHEKSYIR"
misc_feature 212973..>213119
/locus_tag="CP0264"
/note="Transposase, Mutator family; Region:
Transposase_mut; cl27632"
/db_xref="CDD:474953"
gene complement(213152..214879)
/gene="ipaH1.4"
/locus_tag="CP0265"
/db_xref="GeneID:1238052"
CDS complement(213152..214879)
/gene="ipaH1.4"
/locus_tag="CP0265"
/codon_start=1
/transl_table=11
/product="invasion plasmid antigen, secreted by the
Mxi-Spa secretion machinery"
/protein_id="NP_858398.2"
/db_xref="GeneID:1238052"
/translation="MIKSTNIQAIGSGIMHQINNVYSLTPLSLPMELTPSCNEFYLKT
WSEWEKNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLALANNFIEQLPELPFSMNRAVL
MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPQIFFSMGNSA
TISAPEHSLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTS
GFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGL
FDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAV
KEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEE
QKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRL
SENGSNHIA"
misc_feature complement(214691..214861)
/gene="ipaH1.4"
/locus_tag="CP0265"
/note="Type III secretion system leucine rich repeat
protein; Region: TTSSLRR; pfam12468"
/db_xref="CDD:432576"
misc_feature complement(213194..214759)
/gene="ipaH1.4"
/locus_tag="CP0265"
/note="type III secretion system effector E3 ubiquitin
transferase SlrP; Region: PRK15370"
/db_xref="CDD:185268"
misc_feature complement(214604..214657)
/gene="ipaH1.4"
/locus_tag="CP0265"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature complement(214544..214603)
/gene="ipaH1.4"
/locus_tag="CP0265"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature complement(214487..214543)
/gene="ipaH1.4"
/locus_tag="CP0265"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature complement(214424..214483)
/gene="ipaH1.4"
/locus_tag="CP0265"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275378"
misc_feature complement(214232..214303)
/gene="ipaH1.4"
/locus_tag="CP0265"
/note="leucine-rich repeat [structural motif]; Region:
leucine-rich repeat"
/db_xref="CDD:275380"
gene complement(215268..215534)
/gene="ospE1"
/locus_tag="CP0265a"
/db_xref="GeneID:5563319"
CDS complement(215268..215534)
/gene="ospE1"
/locus_tag="CP0265a"
/note="secreted by the Mxi-Spa secretion machinery"
/codon_start=1
/transl_table=11
/product="OspE1"
/protein_id="YP_001449237.1"
/db_xref="GeneID:5563319"
/translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
IYELQIPAASRTKTLKFTATEMQWLTKINEAGIDEKQSQRYSDF"
mobile_element complement(215635..215761)
/note="partial"
/mobile_element_type="insertion sequence:iso-IS1"
gene complement(216182..216334)
/locus_tag="CP0266"
/db_xref="GeneID:3170839"
CDS complement(216182..216334)
/locus_tag="CP0266"
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="NP_858399.2"
/db_xref="GeneID:3170839"
/translation="MSVKLRLPQLSSGEYLPGSLQDKILSDDCLEKEQMVVSAIASTP
QASYHI"
mobile_element complement(216309..216649)
/note="partial"
/mobile_element_type="insertion sequence:IS600"
gene 216373..216756
/locus_tag="CP0267"
/db_xref="GeneID:1238091"
CDS 216373..216756
/locus_tag="CP0267"
/codon_start=1
/transl_table=11
/product="IS600 ORF1"
/protein_id="NP_858400.1"
/db_xref="GeneID:1238091"
/translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRLSVPEGTLGQW
VTAARKGLNTPGSRTVAELESEVMQLRKALNEARLERDILKKATAYFARNPRPIQQCF
KFTLLAFSHLFLGNTGECHDGALSE"
misc_feature 216373..216645
/locus_tag="CP0267"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
mobile_element 216754..218002
/mobile_element_type="insertion sequence:IS911"
gene 216790..217128
/locus_tag="CP0268"
/db_xref="GeneID:1238085"
CDS 216790..217128
/locus_tag="CP0268"
/codon_start=1
/transl_table=11
/product="IS911 ORF1"
/protein_id="NP_858401.1"
/db_xref="GeneID:1238085"
/translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM
DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL
LMSDSLNSSR"
misc_feature 216829..217098
/locus_tag="CP0268"
/note="Transposase InsE and inactivated derivatives
[Mobilome: prophages, transposons]; Region: InsE; COG2963"
/db_xref="CDD:442203"
gene 217155..217994
/locus_tag="CP0269"
/db_xref="GeneID:1238152"
CDS 217155..217994
/locus_tag="CP0269"
/codon_start=1
/transl_table=11
/product="IS911 ORF2"
/protein_id="NP_858402.1"
/db_xref="GeneID:1238152"
/translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH
GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE
RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE
MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS
LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA
SFC"
misc_feature 217176..217985
/locus_tag="CP0269"
/note="putative transposase OrfB; Reviewed; Region:
PHA02517"
/db_xref="CDD:222853"
mobile_element 218765..218945
/note="partial"
/mobile_element_type="insertion sequence:IS3"
gene 218767..218919
/locus_tag="CP0270"
/db_xref="GeneID:1238235"
CDS 218767..218919
/locus_tag="CP0270"
/codon_start=1
/transl_table=11
/product="IS3 ORF2"
/protein_id="NP_858403.1"
/db_xref="GeneID:1238235"
/translation="MECLHGEHFIYREIVRATVFNYIECNYNRWRRHRWCGGLSPEQF
ENQNLA"
misc_feature 218770..218913
/locus_tag="CP0270"
/note="Integrase core domain; Region: rve_3; cl22978"
/db_xref="CDD:451473"
gene 220300..221247
/gene="icsP/sopA"
/locus_tag="CP0271"
/db_xref="GeneID:1238162"
CDS 220300..221247
/gene="icsP/sopA"
/locus_tag="CP0271"
/note="outer membrane protease; involved in virulence in
many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in
Escherichia coli OmpT can degrade antimicrobial peptides;
in Yersinia Pla activates plasminogen during infection; in
Shigella flexneria SopA cleaves the autotransporter IcsA"
/codon_start=1
/transl_table=11
/product="outer membrane protease"
/protein_id="NP_858404.2"
/db_xref="GeneID:1238162"
/translation="MKLKFFVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
FNAMGGSYIYSENGGSRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
KYSGWVLSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
misc_feature 220300..221244
/gene="icsP/sopA"
/locus_tag="CP0271"
/note="omptin family outer membrane protease; Region:
PRK10993"
/db_xref="CDD:236813"
gene complement(221216..221383)
/locus_tag="CP0272"
/db_xref="GeneID:1238236"
CDS complement(221216..221383)
/locus_tag="CP0272"
/codon_start=1
/transl_table=11
/product="IS629 ORF1"
/protein_id="NP_858405.1"
/db_xref="GeneID:1238236"
/translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAIFSHENVINSVN
QFKKYTLYLRK"
misc_feature complement(<221252..>221371)
/locus_tag="CP0272"
/note="EAL domain. This domain is found in diverse
bacterial signaling proteins. It is called EAL after its
conserved residues and is also known as domain of unknown
function 2 (DUF2). The EAL domain has been shown to
stimulate degradation of a second...; Region: EAL;
cl29561"
/db_xref="CDD:453023"
mobile_element complement(221284..221437)
/note="partial"
/mobile_element_type="insertion sequence:IS629"
CONTIG join(AF386526.1:1..221618)
//
