LOCUS NC_012923 24579 bp DNA circular CON 04-APR-2020
DEFINITION Streptococcus suis BM407 plasmid pBM407, complete sequence.
ACCESSION NC_012923
VERSION NC_012923.1
DBLINK BioProject: PRJNA224116
BioSample: SAMEA2272697
Assembly: GCF_000026745.1
KEYWORDS RefSeq.
SOURCE Streptococcus suis BM407
ORGANISM Streptococcus suis BM407
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae;
Streptococcus.
REFERENCE 1
AUTHORS Holden,M.T., Hauser,H., Sanders,M., Ngo,T.H., Cherevach,I.,
Cronin,A., Goodhead,I., Mungall,K., Quail,M.A., Price,C.,
Rabbinowitsch,E., Sharp,S., Croucher,N.J., Chieu,T.B., Mai,N.T.,
Diep,T.S., Chinh,N.T., Kehoe,M., Leigh,J.A., Ward,P.N.,
Dowson,C.G., Whatmore,A.M., Chanter,N., Iversen,P., Gottschalk,M.,
Slater,J.D., Smith,H.E., Spratt,B.G., Xu,J., Ye,C., Bentley,S.,
Barrell,B.G., Schultsz,C., Maskell,D.J. and Parkhill,J.
TITLE Rapid evolution of virulence and drug resistance in the emerging
zoonotic pathogen Streptococcus suis
JOURNAL PLoS ONE 4 (7), e6072 (2009)
PUBMED 19603075
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 24579)
AUTHORS Holden,M.T.G.
TITLE Direct Submission
JOURNAL Submitted (20-OCT-2008) Holden M.T.G., Pathogen Sequencing Unit,
The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,
Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM
COMMENT REFSEQ INFORMATION: The reference sequence was derived from
FM252033.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 04/04/2020 08:37:00
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 2,131
CDSs (total) :: 2,059
Genes (coding) :: 1,994
CDSs (with protein) :: 1,994
Genes (RNA) :: 72
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 56
ncRNAs :: 4
Pseudo Genes (total) :: 65
CDSs (without protein) :: 65
Pseudo Genes (ambiguous residues) :: 0 of 65
Pseudo Genes (frameshifted) :: 33 of 65
Pseudo Genes (incomplete) :: 29 of 65
Pseudo Genes (internal stop) :: 9 of 65
Pseudo Genes (multiple problems) :: 6 of 65
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..24579
/organism="Streptococcus suis BM407"
/mol_type="genomic DNA"
/strain="BM407"
/isolation_source="human case of meningitis"
/db_xref="taxon:568814"
/plasmid="pBM407"
/country="Viet Nam:Ho Chi Minh City"
/collection_date="2004"
gene 43..897
/locus_tag="SSUBM407_RS10465"
/old_locus_tag="SSUBM407_p001"
CDS 43..897
/locus_tag="SSUBM407_RS10465"
/old_locus_tag="SSUBM407_p001"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015543629.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParA family protein"
/protein_id="WP_000409925.1"
/translation="MEKEELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFA
YLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDNL
DLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDYDLIIIDTVPTPSVYTNNAI
VASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSN
LEELYKQHKEDNLVFQNIIKRSNKVSTWSKNGITEHKGYDKKVLSMYKNVFFEMLERI
IQLENEKE"
gene 989..1204
/locus_tag="SSUBM407_RS10470"
/old_locus_tag="SSUBM407_p002"
CDS 989..1204
/locus_tag="SSUBM407_RS10470"
/old_locus_tag="SSUBM407_p002"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000260238.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="peptide-binding protein"
/protein_id="WP_001835296.1"
/translation="MIVGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIET
AKNGGNVKEVMDQALEEYIRKYLPDKL"
gene 1221..1493
/locus_tag="SSUBM407_RS10475"
/old_locus_tag="SSUBM407_p003"
CDS 1221..1493
/locus_tag="SSUBM407_RS10475"
/old_locus_tag="SSUBM407_p003"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002333002.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="antitoxin"
/protein_id="WP_000301765.1"
/translation="MAVTYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEV
NLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLNKEKVA"
gene 1495..2358
/locus_tag="SSUBM407_RS10480"
/old_locus_tag="SSUBM407_p004"
CDS 1495..2358
/locus_tag="SSUBM407_RS10480"
/old_locus_tag="SSUBM407_p004"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010782381.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="toxin zeta"
/protein_id="WP_001284311.1"
/translation="MANIVNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGS
GKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAI
ISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYE
TMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETP
SISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESLQPPTP
PIPKTPKLPGI"
repeat_region 2609..2631
/note="inverted repeat"
repeat_region complement(2628..3394)
/note="IS1216 element"
gene complement(2663..3343)
/locus_tag="SSUBM407_RS10485"
/old_locus_tag="SSUBM407_p005"
CDS complement(2663..3343)
/locus_tag="SSUBM407_RS10485"
/old_locus_tag="SSUBM407_p005"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_064305258.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS6-like element IS1216 family transposase"
/protein_id="WP_001015311.1"
/translation="MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSH
TTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDI
WLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIK
YLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEI
KVLLGIPA"
repeat_region complement(3395..3417)
/note="inverted repeat"
gene complement(<3409..4065)
/locus_tag="SSUBM407_RS10490"
/old_locus_tag="SSUBM407_p006"
/pseudo
CDS complement(<3409..4065)
/locus_tag="SSUBM407_RS10490"
/old_locus_tag="SSUBM407_p006"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_018378534.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="response regulator transcription factor"
gene complement(4069..4401)
/locus_tag="SSUBM407_RS10495"
/old_locus_tag="SSUBM407_p007"
CDS complement(4069..4401)
/locus_tag="SSUBM407_RS10495"
/old_locus_tag="SSUBM407_p007"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012774870.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="LytTR family transcriptional regulator
DNA-binding domain-containing protein"
/protein_id="WP_012774870.1"
/translation="MNFLIVNKDDISMKLFLEDIFYISSDTTKPHMLKAVTESGVFEF
YGTLKDLEDKLKLNFFRCHRKFLVNIDKIQGLNLSERLIVFTNDGVGTISFSRYKQKE
LNKLWRRG"
gene 4591..4959
/locus_tag="SSUBM407_RS10500"
/old_locus_tag="SSUBM407_p008"
CDS 4591..4959
/locus_tag="SSUBM407_RS10500"
/old_locus_tag="SSUBM407_p008"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_044981369.1"
/translation="MFYIIEQQNKNLQITKIISDYLKNRYPKIAFKILQSFKAPPTHQ
SNTYFIINEDICLNEQELEVAKNIRKNDRFGHIILISKNINYLQLFRSHINFLEIIDC
NNNLKEDIYNCIDFLNKNIS"
gene complement(4988..5578)
/locus_tag="SSUBM407_RS10505"
/old_locus_tag="SSUBM407_p009"
CDS complement(4988..5578)
/locus_tag="SSUBM407_RS10505"
/old_locus_tag="SSUBM407_p009"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016177603.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_012774871.1"
/translation="MSRIGYIRISSKDQNLDRQVENLSDVFKVFSDKLSGKDKNRPGL
EELLSFIREGDIVVVSELDRLGRNNKELTEVISMIHSKGATLEILSFPSLIGIKDDNL
RRLLNNLIIEIYKYQAEAERVRLLERQRQGIEIAKRKGKYKGRKPLFTSASPQLQHAF
ELFKSGCSDRDIEDLVGINARTFRRYREKFGIKRTT"
gene complement(5724..7208)
/locus_tag="SSUBM407_RS10510"
/old_locus_tag="SSUBM407_p010"
CDS complement(5724..7208)
/locus_tag="SSUBM407_RS10510"
/old_locus_tag="SSUBM407_p010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003078069.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="primase C-terminal domain-containing protein"
/protein_id="WP_044981370.1"
/translation="MNIEKIHQMILKDGLRQFKFKNSKHENTPFEEQKGAIFGYRSKK
NMTAGRGIVLTSLEAVEDNQTVFTHWTPNVYRYGTYSQKNPRITKGHSENNLRQINAF
YIDFDLKNQSDNINFSDILVSSLDLGFMPTLILKTENGYQAYFILKDAAYVTAATEFK
VVNVAKMISQNIRNHFIKDLPVDMTCNHFGIARIPREDNIEYFDQNNVYTFAEWFNWS
MQQDDLTYSKKPNLLVLSGTEGQKQIDEPWYRLLKNTSKIRGEKAIMGRNNVIFTLAL
ANYASGVAYSDCMEELSDYNAELEVPLKKNELKKTIASAYSGRYEAANRDFIKILCQT
WISSDLTTKDLFIRQGWYKFKKSRDQRQRSHFSEWREDFWNYIKQKTNSDSPYLRVKK
KEITATIGIPERSLDYVLKTLQSEGKILYSFKRGRQGGIILASISNIALSLISMNKKA
REAYYIALSRILGVSKGILIKLLKRAIIGLTTPQTSSLFELDTG"
gene complement(7586..7783)
/locus_tag="SSUBM407_RS10515"
CDS complement(7586..7783)
/locus_tag="SSUBM407_RS10515"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_018372616.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix transcriptional regulator"
/protein_id="WP_044475471.1"
/translation="MAELKNNVKRFRVRKAFTQEQLASKVNCSRQLISSIERGKMVPS
VLIALKIAKILEVCVDDIFTF"
gene complement(7904..8056)
/locus_tag="SSUBM407_RS10520"
CDS complement(7904..8056)
/locus_tag="SSUBM407_RS10520"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001180497.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class IIb bacteriocin, lactobin A/cerein 7B
family"
/protein_id="WP_044475472.1"
/translation="MENIKKFEEVSTEELTSVEGGVGVLAVIGWSLLAAGGSGLVGYG
LARTFG"
gene complement(8195..8380)
/locus_tag="SSUBM407_RS10525"
CDS complement(8195..8380)
/locus_tag="SSUBM407_RS10525"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000180829.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class IIb bacteriocin, lactobin A/cerein 7B
family"
/protein_id="WP_044475473.1"
/translation="MTKFETMDKMNVDFVALSDRELMDMEGGIIPVAVAAGIVASAAF
AGLSAGVTIGISRNGRK"
gene complement(9053..9214)
/locus_tag="SSUBM407_RS10530"
CDS complement(9053..9214)
/locus_tag="SSUBM407_RS10530"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004181943.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class IIb bacteriocin, lactobin A/cerein 7B
family"
/protein_id="WP_079395234.1"
/translation="MNKFNTLCDDELVMIEGGLDPFTVTIGLGTLFLAAASGGYAFGK
DLANRQRRK"
gene complement(9412..9621)
/locus_tag="SSUBM407_RS10535"
CDS complement(9412..9621)
/locus_tag="SSUBM407_RS10535"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000180816.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class IIb bacteriocin, lactobin A/cerein 7B
family"
/protein_id="WP_044475475.1"
/translation="MTKFETMDKMNVDFVALTEEELMNVDGGLLPVVVGGVVVGWKVA
AGVTAGVIAGGVAIGAAAGYFANRP"
gene complement(9930..>10256)
/locus_tag="SSUBM407_RS10540"
/old_locus_tag="SSUBM407_p011"
/pseudo
CDS complement(9930..>10256)
/locus_tag="SSUBM407_RS10540"
/old_locus_tag="SSUBM407_p011"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002943485.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(10376..10531)
/locus_tag="SSUBM407_RS10545"
CDS complement(10376..10531)
/locus_tag="SSUBM407_RS10545"
/inference="COORDINATES: protein motif:HMM:TIGR03949.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class IIb bacteriocin, lactobin A/cerein 7B
family"
/protein_id="WP_153308592.1"
/translation="MTNFEVIDKTNFVALSEVEMMETEGGFATGLGIAIGTVAVYCIG
YMIGKNK"
gene complement(10543..10686)
/locus_tag="SSUBM407_RS10550"
CDS complement(10543..10686)
/locus_tag="SSUBM407_RS10550"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003080524.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class IIb bacteriocin, lactobin A/cerein 7B
family"
/protein_id="WP_153585982.1"
/translation="MALSEAEMMETEGGFVVTGTMIYTGVKLASASFALGYAIGQAIK
NSK"
gene complement(10890..11027)
/locus_tag="SSUBM407_RS10555"
CDS complement(10890..11027)
/locus_tag="SSUBM407_RS10555"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_153585979.1"
/translation="MKTLTQKELVKTTGGSIIGLIGKGQTLRSPRIYLPGPVKPKLEV
M"
gene complement(11145..11330)
/locus_tag="SSUBM407_RS10560"
CDS complement(11145..11330)
/locus_tag="SSUBM407_RS10560"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_044475477.1"
/translation="MTKLIDIDMTKLMDILMFSSLSCSFMYFLGAYLSGKSFDNPLTF
VMLSGAVAGVLHLLDRV"
gene complement(11342..11497)
/locus_tag="SSUBM407_RS10565"
CDS complement(11342..11497)
/locus_tag="SSUBM407_RS10565"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003080524.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class IIb bacteriocin, lactobin A/cerein 7B
family"
/protein_id="WP_079395235.1"
/translation="MNNFVDMKQEELENINGGFVVTGTMIYTGVKLASASFALGYAIG
QAIKNSK"
gene complement(11508..11669)
/locus_tag="SSUBM407_RS10570"
CDS complement(11508..11669)
/locus_tag="SSUBM407_RS10570"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000180826.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="bacteriocin"
/protein_id="WP_153585981.1"
/translation="MTKFDTLDNMNFVALSESEMMETDGGLVITGPAIVGGLIVVGFG
GLGLYLGSK"
gene complement(11869..12765)
/locus_tag="SSUBM407_RS10575"
/old_locus_tag="SSUBM407_p012"
CDS complement(11869..12765)
/locus_tag="SSUBM407_RS10575"
/old_locus_tag="SSUBM407_p012"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002943485.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="nucleotidyl transferase AbiEii/AbiGii toxin
family protein"
/protein_id="WP_012774874.1"
/translation="MTPDEIRNTILKAIYSDTELVENLVLKGGNALKLHRIVDRESQD
LDFSIKETIRFTKENEGVKLQQLITDAFRQKGFFVNSFEFVPKPKNRHRDLPPFWGGY
KISFALLDQEKYQDKINSQDSRQMKELNKYALSIEGGVKKIEIDLSYDEYTEHKEAYD
LDGTTIYLYSPLMIVYEKIRASCQQLEEYPLTTNKTRARDLYDIFKTLTNINQVELRS
EVLSEDNFYILENIFRVKEVPLELMTKLDTKKDDLAADYERKVLPQISNKDREEFEYI
FDYNQRLFNELFEKYQKYNESR"
gene 12966..13949
/locus_tag="SSUBM407_RS10580"
/old_locus_tag="SSUBM407_p013"
CDS 12966..13949
/locus_tag="SSUBM407_RS10580"
/old_locus_tag="SSUBM407_p013"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002943483.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_012774875.1"
/translation="MVLSDEKIQNILLEKKITKDASNLVKYSDEIVIQARKEFGNILN
RTSIIKILNDFKQSNKLKKSASVSKFIDIIIDKLGLFEPIKILNEYKGETVTRYIATD
VQISPYEIALSLLSKSFLSHYSALFVNDLTINNPKDIYINKEQSKKDFYSNNEQNISQ
GRIDYAFSKKMRRTNMIYSFTYDETSYKVHVLNSKNTNNTGVVLKNVVGFSKPVRTTN
IERTLIDATVRPGYSGGALEILEAFLRAKNELNSKQLWSYLKKFNYSYPYHKAIAFYL
KYSDYSYKNELVDFCNNDNQNSLTFYLDYQMVSPQKDDELGIYFPKMIPLK"
repeat_region 13968..13990
/note="inverted repeat"
repeat_region complement(13991..14753)
/note="IS1216 element"
gene complement(14022..14702)
/locus_tag="SSUBM407_RS10585"
/old_locus_tag="SSUBM407_p014"
CDS complement(14022..14702)
/locus_tag="SSUBM407_RS10585"
/old_locus_tag="SSUBM407_p014"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_064305258.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS6-like element IS1216 family transposase"
/protein_id="WP_001015311.1"
/translation="MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSH
TTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDI
WLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIK
YLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEI
KVLLGIPA"
repeat_region complement(14754..14776)
/note="inverted repeat"
gene complement(14890..18540)
/gene="addA"
/locus_tag="SSUBM407_RS10590"
/old_locus_tag="SSUBM407_p015"
CDS complement(14890..18540)
/gene="addA"
/locus_tag="SSUBM407_RS10590"
/old_locus_tag="SSUBM407_p015"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014638042.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helicase-exonuclease AddAB subunit AddA"
/protein_id="WP_012775061.1"
/translation="MAFEQFLSAEEIKAVQLAEAHSDKQQKRTAEQIEAIYTHGQNVL
VSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELKERIEKKLNETIAET
TDMELRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEEDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWL
KEQAVQADLYSQERIEQMLEQGFKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANV
EEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAFKEEYNAG
KSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEAAFEF
GDIGHFAIRILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGD
IKQSIYRFRQADPMIFQEKFELYQANPQSGKLILLKENFRSQIEVLEATNAIFTRLMD
RQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQDSANSSTDAEEETPLTAGEI
EVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSL
EVMIMLDTLRVINNPLNDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQ
ASGQHPELMSEKLKKKITDFLSILENWRAYAKLHSIYDMIWKMFNEKFYYDYVGALPN
GSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLM
TIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQV
RVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKK
ENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTEEKIGKLTLKSKL
EDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEG
MEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVRAALEAV
HAEQAIKDKINVQMILDFFDTDLGREILANTDKLHREAPFASLQTDSVSQENFVLRGI
IDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCHLILL
GGERIEVVEVNI"
gene complement(18540..21806)
/gene="rexB"
/locus_tag="SSUBM407_RS10595"
/old_locus_tag="SSUBM407_p016"
CDS complement(18540..21806)
/gene="rexB"
/locus_tag="SSUBM407_RS10595"
/old_locus_tag="SSUBM407_p016"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015646904.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ATP-dependent nuclease subunit B"
/protein_id="WP_012774876.1"
/translation="MKLVYTDIRNPLTQYLTEQTATFAEQGKRVFYIAPNSLSFEMER
KVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQPLDDVGLAMIFFRVLSQFEDGDL
KVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
EGFEHQSKLAQLTGLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILI
GVYASKKAVQATYAEGNVYQANVDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEA
YYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQGARYKDILLLLGDV
DSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLLNLLKSG
LYASISQKELDLFESYILFADMKGQAAFSRAFSVNGRADYDAEVIKEKRLVYDLTVLE
PLRAKIMEPLNQLFKAGPQSGTALLEKFMAFLEAIDLPKNMEKMSRNLSEVEQEKEEQ
VWKSFTHLLENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVKSYDLIE
PHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHA
AMMSLLNSATEQLVISTPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGH
YKSLLSRLIESERPSLETEEWEGQRAFWTVLVRHLKKKLESQSIEIPTITGDIASKQL
SDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLH
RIFERVVMDQSELDFDQKVDKAILCTRDEAEFAMFYNQDADARYTEEVLDKIARSSAT
ILRDNDLVEIDGQEKSFRQDKALVFDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKS
SDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQDPIIKLKDTKNLE
QLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAMDI
LAGRFAINPYTKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD
"
gene complement(22097..>23536)
/locus_tag="SSUBM407_RS10600"
/old_locus_tag="SSUBM407_p017"
/pseudo
CDS complement(22097..>23536)
/locus_tag="SSUBM407_RS10600"
/old_locus_tag="SSUBM407_p017"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012775059.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="LPXTG cell wall anchor domain-containing
protein"
repeat_region 23539..23561
/note="inverted repeat"
repeat_region complement(23562..24324)
/note="IS1216 element"
gene complement(23593..24273)
/locus_tag="SSUBM407_RS10605"
/old_locus_tag="SSUBM407_p018"
CDS complement(23593..24273)
/locus_tag="SSUBM407_RS10605"
/old_locus_tag="SSUBM407_p018"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_064305258.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS6-like element IS1216 family transposase"
/protein_id="WP_001015311.1"
/translation="MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSH
TTIYRWVQEYGKLLYQIWKKKNKKSFYSWKMDETYIKIKGKWHYLYRAIDADGLTLDI
WLRKKRDTQAAYAFLKRLVKQFDEPKVVVTDKAPSITSAFKKLKEYGFYQGTEHRTIK
YLNNLIEQDHRPVKRRNKFYRSLRTASTTIKGMEAIRGLYKKTRKEGTLFGFSVCTEI
KVLLGIPA"
repeat_region complement(24325..24347)
/note="inverted repeat"
gene <24349..24477
/locus_tag="SSUBM407_RS10610"
/pseudo
CDS <24349..24477
/locus_tag="SSUBM407_RS10610"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000108743.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="topoisomerase"
CONTIG join(FM252033.1:1..24579)
//
