LOCUS NC_001403 4788 bp RNA linear VRL 13-AUG-2018
DEFINITION Fujinami sarcoma virus, complete genome.
ACCESSION NC_001403
VERSION NC_001403.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Fujinami sarcoma virus
ORGANISM Fujinami sarcoma virus
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus.
REFERENCE 1 (bases 1 to 4788)
AUTHORS Petropoulos,C.J.
TITLE Appendix 2: Retroviral taxonomy, protein structure, sequences, and
genetic maps
JOURNAL (in) Coffin,J.M. (Ed.);
RETROVIRUSES: 757;
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York,
NY, USA (1997)
REFERENCE 2 (bases 1 to 4788)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4788)
AUTHORS Chappey,C.
TITLE Direct Submission
JOURNAL Submitted (12-NOV-1997) NIH, NLM, Rockville Pike, Bethesda, MD
20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AF033810.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..4788
/organism="Fujinami sarcoma virus"
/mol_type="genomic RNA"
/db_xref="taxon:11885"
gene 22..4442
/locus_tag="FuSVgp1"
/db_xref="GeneID:1491921"
mRNA 22..4442
/locus_tag="FuSVgp1"
/product="p140 polyprotein"
/db_xref="GeneID:1491921"
5'UTR 22..102
/locus_tag="FuSVgp1"
CDS 380..3928
/locus_tag="FuSVgp1"
/codon_start=1
/product="p140 polyprotein"
/protein_id="NP_056889.1"
/db_xref="GeneID:1491921"
/translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSQLQKEGLLMSLSD
LYSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG
GRVSPPGPECIEKPATERRIDKGETTVQRDTKMAPEETATPKTVGTSCYHCGTAIGCN
CATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGRTGLAPGPALTDW
ARIREELASTGPPMVAMPVVIKTEGPAWTPLEPKLIAGLAGAVGAGGLRSPIAVAGVE
ALMSSPLLPHDVTNPMRVILGPAPHALWMDAWAASGQLHRPQPQEHTSTSAAAGTWRL
TQASESRHRLPHCSAAPSHQDHSAMGFGPELWCPKGHTELLRLQDSELRLLELMKKWM
SQRAKSDREYAGMLHHMFSQLEKQEGLGHLRATDHSSQIGESWWVLASQTETLSQTLR
RHAEELAAGPLAKLSILIRDKQQLRKVFSEQWQQLSQEYAWTTQQEVEKLKAQYRSLV
RDSTQAKRKYQEASKDKEREKAKEKYVRSLSKLYALHNQYVLAVQAAALHHHHHYQRA
LPTLHESLYSLQQEMVLVLKEILGEYCSITSLVQEDVLAIHQKVAHAVEMIDPATEYS
SFVQCHRYDSEVPPAVTFDESLLEEAENLEPGELQLNELTIESVQHSLTSIEEELLAS
RKAVSSKEQRVWELQVELRGEELALSPGERVHLLGKRQGLREAQQQLQGLVCAQAKLQ
AQRDMLANKLAELGSEEPPPALPLQEDRQSARSTDQERSGVTALKTIKNHISGIFSPR
FSLPPPVPLIPEVQKPLCQQAWYHGAIPRSEVQELLKYSGDFLVRESQGKQEYVLSVL
WDGQPRHFIIQAADNLYRLEDDGLPTIPLLIDHLLQSQRPITRKSGIVLTRAVLKDKW
VLNHEDVLLGERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILK
QCNHPNIVRLIGVCTQKQPIYIVMELVQGGDFLSFLRSKGPRLKMKKLIKMMENAAAG
MEYLESKHCIHRDLAARNCLVTEKNTLKISDFGMSRQEEDGVYASTGGMKQIPVKWTA
PEALNYGWYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRLEPPEQCP
EDVYRLMQRCWEYDPHRRPSFGAVHQDLIAIRKRHR"
mat_peptide 380..835
/locus_tag="FuSVgp1"
/product="p14 MA"
/protein_id="NP_955603.1"
misc_feature 383..640
/locus_tag="FuSVgp1"
/note="Retroviral M domain; Region: Retro_M; pfam02813"
/db_xref="CDD:280904"
mat_peptide 899..1087
/locus_tag="FuSVgp1"
/product="p10"
/protein_id="NP_955604.1"
mat_peptide 1085..1309
/locus_tag="FuSVgp1"
/product="CA"
/protein_id="NP_955605.1"
mat_peptide 1307..3925
/locus_tag="FuSVgp1"
/product="FBS"
/protein_id="NP_955606.1"
misc_feature 1472..2182
/locus_tag="FuSVgp1"
/note="The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma)
tyrosine kinase; Region: F-BAR_Fes; cd07685"
/db_xref="CDD:153369"
misc_feature order(1487..1489,1496..1498,1517..1519,1526..1531,
1538..1540,1547..1552,1559..1564,1571..1573,1583..1585,
1592..1594,1604..1606,1700..1702,1709..1711,1970..1972,
1982..1984,2057..2059,2081..2083,2090..2092,2099..2104,
2111..2113,2123..2125,2132..2134,2144..2146,2156..2158,
2165..2170,2177..2179)
/locus_tag="FuSVgp1"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:153369"
misc_feature 2816..3070
/locus_tag="FuSVgp1"
/note="Src homology 2 (SH2) domain found in feline
sarcoma, Fujinami poultry sarcoma, and fes-related
(Fes/Fps/Fer) proteins; Region: SH2_Fps_family; cd10361"
/db_xref="CDD:198224"
misc_feature order(2858..2860,2906..2908,2966..2968,2972..2974)
/locus_tag="FuSVgp1"
/note="phosphotyrosine binding pocket [polypeptide
binding]; other site"
/db_xref="CDD:198224"
misc_feature order(2969..2971,3047..3049)
/locus_tag="FuSVgp1"
/note="hydrophobic binding pocket [polypeptide binding];
other site"
/db_xref="CDD:198224"
misc_feature 3149..3904
/locus_tag="FuSVgp1"
/note="Catalytic domain of the Protein Tyrosine Kinase,
Fes; Region: PTKc_Fes; cd05084"
/db_xref="CDD:270667"
misc_feature order(3158..3166,3182..3184,3221..3223,3227..3229,
3278..3280,3365..3376,3383..3388,3506..3508,3518..3523,
3527..3529,3557..3562,3569..3571,3614..3631,3635..3637,
3653..3655,3755..3757,3767..3769)
/locus_tag="FuSVgp1"
/note="active site"
/db_xref="CDD:270667"
misc_feature order(3158..3166,3182..3184,3221..3223,3227..3229,
3278..3280,3365..3376,3383..3388,3518..3523,3527..3529,
3557..3562)
/locus_tag="FuSVgp1"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:270667"
misc_feature order(3506..3508,3518..3523,3569..3571,3614..3631,
3635..3637,3653..3655,3755..3757,3767..3769)
/locus_tag="FuSVgp1"
/note="polypeptide substrate binding site [polypeptide
binding]; other site"
/db_xref="CDD:270667"
misc_feature 3557..3634
/locus_tag="FuSVgp1"
/note="activation loop (A-loop); other site"
/db_xref="CDD:270667"
3'UTR 4196..4442
/locus_tag="FuSVgp1"
ORIGIN
1 gccattttac cattcaccac attggtgtgc acctgggtag atggacagac cgttgagtcc
61 ctaacgattg cgaacacctg aatgaagcgg aaggcttcat ttggtgaccc cgacgtgatc
121 gttagggaat agtggtcggc cacaggcggc gtggcgatcc tgccctcatc cgtctcgctt
181 aatcggggag cggacgatga ccctagcaga gggggctgcg gcttaggagg gcagaagctg
241 agtgacgtcg gagggagctc cacggccggg ggccaagata acctaccgag aactcagaga
301 gtcgttggaa gacgggaagg aagcccaacg actgagcagt ccaccccagg cgtgattctg
361 gtcgcccggt ggatcaagca tggaagccgt cataaaggtg atttcgtccg cgtgtaaaac
421 ctattgcggg aaaacctctc cttctaagaa ggaaataggg gccatgttgt cccagttaca
481 aaaggaaggg ttgcttatgt ccctctcaga cttatattcc ccggggtcct gggatcccat
541 taccgcggca ctcacacagc gggcgatggt acttgggaaa tcgggagagt taaaaacctg
601 gggattggtt ttgggggcat tgaaggcggc ccgagaggaa caggttacat ctgagcaagc
661 aaagttttgg ttgggattag ggggagggag ggtctctccc ccaggtccgg agtgcatcga
721 gaaaccagca acggagcggc gaatcgacaa gggagaaaca actgtgcagc gagatacgaa
781 gatggcgccg gaggaaacgg ccacacctaa aaccgttggc acatcctgct atcattgcgg
841 aacagctatt ggctgtaatt gcgccacagc ctcggctcct cctcctcctt atgtggggag
901 tggtttgtat ccttccctgg cgggggtggg agagcagcag ggccaggggg gtgacacacc
961 tcggggggcg gaacagccaa gggcggagcc agggcgcacg ggtctggccc ctgggccggc
1021 cctgactgac tgggcaagga ttagggagga gcttgcgagt acaggtccgc ccatggtggc
1081 catgcctgta gtgattaaga cagagggacc cgcctggacc cctctggagc caaaattgat
1141 cgcaggacta gctggtgcgg tcggggccgg gggcttgcga tctccgatcg ctgtggcagg
1201 ggtggaggcg cttatgtcct ccccgctgct gccgcatgac gtcacgaatc caatgagagt
1261 tattttagga cccgccccac atgccttatg gatggacgct tgggctgcgt caggtcagtt
1321 gcaccggccc caaccccagg aacacaccag caccagcgct gcagcgggga cctggcggct
1381 cactcaggct tcggagtcgc ggcacaggct gccccactgc tctgcagccc catcccacca
1441 ggatcacagt gccatgggct ttgggccgga gctgtggtgc ccgaaggggc acactgagct
1501 gctgcggctg caggacagcg agttgcgcct cctggagctg atgaagaagt ggatgtcaca
1561 gcgtgctaag agcgaccggg agtacgcggg gatgctgcac cacatgttct ctcagctgga
1621 gaaacaggag ggcctgggac atctccgtgc caccgaccac agcagccaga tcggggagtc
1681 gtggtgggtt ctggcaagcc agactgagac actgagccag acgctgcggc ggcacgcgga
1741 ggagctggca gcggggccgc tggccaagct gagcatactg atccgtgaca agcagcagct
1801 tcgcaaggtc ttcagtgagc agtggcagca gctcagccag gagtacgcct ggaccacaca
1861 gcaggaagtt gagaagctga aggcacagta ccgcagcctg gtgcgtgaca gcacccaggc
1921 caagcgcaag taccaggagg ccagcaaaga caaggagcgg gaaaaggcga aggaaaagta
1981 cgtgcgcagc ctgtcgaagc tctatgcctt gcacaaccag tacgtgctgg ctgtgcaggc
2041 ggctgcgttg caccaccacc atcactacca gcgtgctctg cccaccctgc acgagtccct
2101 ctacagcctg cagcaggaga tggtccttgt tttgaaggag attcttgggg agtactgtag
2161 catcaccagt ctggtgcagg aggacgtgct ggccatccac cagaaggttg cccacgccgt
2221 cgagatgatc gaccccgcca ctgagtacag cagctttgtt cagtgccaca ggtacgactc
2281 tgaggtacca ccggcagtga cctttgatga gagcttgctg gaggaggcag agaacctgga
2341 gccaggggag ctgcagctga atgagctgac catcgagagc gtgcaacact ccctgacatc
2401 cattgaggag gagctgttgg ccagcaggaa ggcagtgagc agcaaggagc agcgggtgtg
2461 ggagctgcag gttgagctgc ggggcgagga gctggcactc agccctgggg agcgggtgca
2521 cttgctgggc aagcggcagg ggctgcggga ggcccagcag cagctgcagg gcttggtctg
2581 tgctcaggcc aagctgcagg cacagcggga tatgctggcc aacaagctgg cagagctggg
2641 ctctgaggag ccccctcccg ccttgcccct gcaggaggac cggcagtcag cgcgctccac
2701 ggatcaggag cgcagtgggg tgactgcgct gaagaccatc aagaaccaca tctcgggcat
2761 cttcagtccc aggttctcgc tgccacctcc cgtgcccctc atcccggagg tgcagaagcc
2821 gctgtgccag caggcctggt accacggggc catcccgcgc tcggaggtgc aggagctgct
2881 gaaatacagc ggagacttcc tggtgcggga gagccagggg aagcaggagt atgtgctcag
2941 cgtgctgtgg gatgggcagc cccggcactt catcatccag gctgctgaca acctgtacag
3001 gctggaagac gatggccttc ccaccatccc gctgctcatc gaccacctgc tgcagagcca
3061 gcggcccatc acccgcaaga gcggcatcgt cctgaccaga gccgtgctca aggacaagtg
3121 ggtgctcaac catgaggacg tgctgctggg ggagcgcatt ggccggggga acttcgggga
3181 ggtgttcagc ggccgcctgc gtgctgacaa cacccccgtg gcggtgaaat cctgccggga
3241 aaccctgccg cccgagctga aggccaagtt cctgcaggaa gccaggatcc tcaagcagtg
3301 caaccatccc aacatcgtcc ggctcatcgg cgtctgcacc cagaagcagc ccatttacat
3361 cgtcatggag ctggtgcagg gaggggactt cctgagcttc ctgcgcagca aggggccccg
3421 cctgaagatg aagaagctga tcaagatgat ggagaatgcc gcggcgggca tggagtacct
3481 ggaaagcaag cactgcatcc acagggacct ggctgcccgc aactgcctgg tgacagaaaa
3541 gaacaccctg aaaatcagcg actttgggat gtcgcggcag gaggaggatg gtgtctatgc
3601 ctccacgggg ggcatgaagc agatccccgt gaaatggact gcccccgagg ctctgaatta
3661 cggctggtac agctcggaga gcgacgtgtg gagctttggg atcctgctgt gggaagcctt
3721 cagcctgggc gccgtgccct acgccaacct cagcaaccag cagacgcgcg aggccatcga
3781 gcagggcgtg cggctggagc ccccggagca gtgccccgag gacgtgtacc gcctgatgca
3841 gcgctgctgg gagtacgacc ctcacaggcg gccgagcttc ggcgccgtcc accaggacct
3901 catcgccatc cgcaaacggc accgctgagc ggctgcgccc gcccgggcgg cggggccgga
3961 gagcggcggg gccggaggcg cggagggccg cggtgcgctg ctgcgaaata aaagtcggct
4021 ctgcggaaat ttgactgaga ttaggctttt gcgctgtttc gcgatgtacg ggtcaggagt
4081 gagtagtata actgagggga ccatggtatg tataggcgct aggcggggct tcggttgtac
4141 gcggttaggg gtcccctcag gaagtagtaa atgcgctttc gcatagggag ggggagatgt
4201 tgccagttag tcatcattgc cacttagtca tcattacata agacagtcta aagtcctaaa
4261 aaggaaaaac aagacatctc ggatgtcatt ggctgcaacc agtaaggaag tagtggcgtg
4321 aggatcaccc gatgggtgta acccagaagg ccattggtgg cagctgatgt cgtgatatca
4381 ccttatgggc aaggctaaag ctgtgcataa ctatataagc cattgtaacc ttctaataaa
4441 cgccatttta ccattcacca cattggtgtg cacctgggta gatggacaga ccgttgagtc
4501 cctaacgatt gcgaacacct gaatgaagcg gaaggcttca ttgatgttgc cagttagtca
4561 tcattgccac ttagtcatca ttacataaga cagtctaaag tcctaaaaag gaaaaacaag
4621 acatctcgga tgtcattggc tgcaaccagt aaggaagtag tggcgtgagg atcacccgat
4681 gggtgtaacc cagaaggcca ttggtggcag ctgatgtcgt gatatcacct tatgggcaag
4741 gctaaagctg tgcataacta tataagccat tgtaaccttc taataaac
//
