LOCUS NC_001427 2319 bp ss-DNA circular VRL 13-AUG-2018
DEFINITION Chicken anemia virus, complete genome.
ACCESSION NC_001427
VERSION NC_001427.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Chicken anemia virus
ORGANISM Chicken anemia virus
Viruses; Anelloviridae; Gyrovirus; Gyrovirus chickenanemia.
REFERENCE 1 (bases 1 to 2319)
AUTHORS Noteborn,M.H.M., de Boer,G.F., Roozelaar,D.J., Karreman,C.,
Kranenburg,O., Vos,J.G., Jeurissen,S.H.M., Hoeben,R.C., Zantema,A.,
Koch,G., van Ormondt,H. and van der Eb,A.J.
TITLE Characterization of cloned chicken anemia virus DNA that contains
all elements for the infectious replication cycle
JOURNAL J. Virol. 65 (6), 3131-3139 (1991)
PUBMED 1851873
REFERENCE 2 (bases 1 to 2319)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from M55918.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2319
/organism="Chicken anemia virus"
/mol_type="genomic DNA"
/db_xref="taxon:12618"
gene 57..332
/locus_tag="CAVgp1"
/db_xref="GeneID:1724885"
CDS 57..332
/locus_tag="CAVgp1"
/note="Predicted by GeneMark"
/codon_start=1
/product="hypothetical protein"
/protein_id="NP_595041.1"
/db_xref="GeneID:1724885"
/translation="MDESLDFARDSSKAGGRRPPGGPPPTSGARTGGYVIRTGGYVIR
TGGYVTKRRSRTGGYVTRTGGYVTANQKLPRCESDVSKMGGASLSIY"
gene 144..2292
/gene="Cux-1"
/locus_tag="CAVgp2"
/db_xref="GeneID:1494446"
repeat_region 144..260
/locus_tag="CAVgp1"
/note="21-bp repeats with ATF sites"
/rpt_unit_range=144..164
/rpt_unit_range=165..185
/rpt_unit_range=186..206
/rpt_unit_range=219..239
/rpt_unit_range=240..260
regulatory 261..266
/regulatory_class="CAAT_signal"
/locus_tag="CAVgp1"
regulatory 305..310
/regulatory_class="promoter"
/locus_tag="CAVgp1"
/note="SP1 box"
regulatory 323..328
/regulatory_class="TATA_box"
/locus_tag="CAVgp1"
CDS 380..1030
/gene="Cux-1"
/locus_tag="CAVgp2"
/note="ORF1"
/codon_start=1
/product="hypothetical protein"
/protein_id="NP_056773.1"
/db_xref="GeneID:1494446"
/translation="MHGNGGQPAAGGSESALSREGQPGPSGAAQGQVISNERSPRRYS
TRTINGVQATNKFTAVGNPSLQRDPDWYRWNYNHSIAVWLRECSRSHAKICNCGQFRK
HWFQECAGLEDRSTQASLEEAILRPLRVQGKRAKRKLDYHYSQPTPNRKKAYKTVRWQ
DELADREADFTPSEEDGGTTSSDFDEDINFDIGGDSGIVDELLGRPFTTPAPVRIV"
misc_feature 575..1009
/gene="Cux-1"
/locus_tag="CAVgp2"
/note="TT viral ORF2; Region: TT_ORF2; pfam02957"
/db_xref="CDD:251643"
CDS 486..851
/gene="Cux-1"
/locus_tag="CAVgp2"
/note="ORF2"
/codon_start=1
/product="APOPTIN"
/protein_id="NP_056774.1"
/db_xref="GeneID:1494446"
/translation="MNALQEDTPPGPSTVFRPPTSSRPLETPHCREIRIGIAGITITL
SLCGCANARAPTLRSATADNSESTGFKNVPDLRTDQPKPPSKKRSCDPSEYRVSELKE
SLITTTPSRPRTAKRRIRL"
misc_feature 486..848
/gene="Cux-1"
/locus_tag="CAVgp2"
/note="Chicken anaemia virus VP-3 protein; Region:
CAV_VP3; pfam04771"
/db_xref="CDD:282606"
CDS 853..2202
/gene="Cux-1"
/locus_tag="CAVgp2"
/note="ORF3"
/codon_start=1
/product="nucleocapsid protein"
/protein_id="NP_056775.1"
/db_xref="GeneID:1494446"
/translation="MARRARRPRGRFYSFRRGRWHHLKRLRRRYKFRHRRRQRYRRRA
FRKAFHNPRPGTYSVRLPNPQSTMTIRFQGVIFLTEGLILPKNSTAGGYADHMYGARV
AKISVNLKEFLLASMNLTYVSKIGGPIAGELIADGSKSQAADNWPNCWLPLDNNVPSA
TPSAWWRWALMMMQPTDSCRFFNHPKQMTLQDMGRMFGGWHLFRHIETRFQLLATKNE
GSFSPVASLLSQGEYLTRRDDVKYSSDHQNRWQKGGQPMTGGIAYATGKMRPDEQQYP
AMPPDPPIITATTAQGTQVRCMNSTQAWWSWDTYMSFATLTALGAQWSFPPGQRSVSR
RSFNHHKARGAGDPKGQRWHTLVPLGTETITDSYMSAPASELDTNFFTLYVAQGTNKS
QQYKFGTATYALKEPVMKSDAWAVVRVQSVWQLGNRQRPYPWDVNWANSTMYWGTQP"
misc_feature 853..2199
/gene="Cux-1"
/locus_tag="CAVgp2"
/note="Gyrovirus capsid protein (VP1); Region:
Gyro_capsid; pfam04162"
/db_xref="CDD:282072"
regulatory 2287..2292
/regulatory_class="polyA_signal_sequence"
/gene="Cux-1"
/locus_tag="CAVgp2"
ORIGIN
1 gaattccgag tggttactat tccatcacca ttctagcctg tacacagaaa gtcaagatgg
61 acgaatcgct cgacttcgct cgcgattcgt cgaaggcggg gggccggagg ccccccggtg
121 gcccccctcc aacgagtgga gcacgtacag gggggtacgt catccgtaca ggggggtacg
181 tcatccgtac aggggggtac gtcacaaaga ggcgttcccg tacagggggg tacgtcacgc
241 gtacaggggg gtacgtcaca gccaatcaaa agctgccacg ttgcgaaagt gacgtttcga
301 aaatgggcgg cgcaagcctc tctatatatt gagcgcacat accggtcggc agtaggtata
361 cgcaaggcgg tccgggtgga tgcacgggaa cggcggacaa ccggccgctg ggggcagtga
421 atcggcgctt agccgagagg ggcaacctgg gcccagcgga gccgcgcagg ggcaagtaat
481 ttcaaatgaa cgctctccaa gaagatactc cacccggacc atcaacggtg ttcaggccac
541 caacaagttc acggccgttg gaaacccctc actgcagaga gatccggatt ggtatcgctg
601 gaattacaat cactctatcg ctgtgtggct gcgcgaatgc tcgcgctccc acgctaagat
661 ctgcaactgc ggacaattca gaaagcactg gtttcaagaa tgtgccggac ttgaggaccg
721 atcaacccaa gcctccctcg aagaagcgat cctgcgaccc ctccgagtac agggtaagcg
781 agctaaaaga aagcttgatt accactactc ccagccgacc ccgaaccgca aaaaggcgta
841 taagactgta agatggcaag acgagctcgc agaccgagag gccgatttta ctccttcaga
901 agaggacggt ggcaccacct caagcgactt cgacgaagat ataaatttcg acatcggagg
961 agacagcggt atcgtagacg agcttttagg aaggcctttc acaacccccg ccccggtacg
1021 tatagtgtga ggctgccgaa cccccaatct actatgacta tccgcttcca aggggtcatc
1081 tttctcacgg aaggactcat tctgcctaaa aacagcacag cggggggcta tgcagaccac
1141 atgtacgggg cgagagtcgc caagatctct gtgaacctga aagagttcct gctagcctca
1201 atgaacctga catacgtgag caaaatcgga ggccccatcg ccggtgagtt gattgcggac
1261 gggtctaaat cacaagccgc ggacaattgg cctaattgct ggctgccgct agataataac
1321 gtgccctccg ctacaccatc ggcatggtgg agatgggcct taatgatgat gcagcccacg
1381 gactcttgcc ggttctttaa tcacccaaag cagatgaccc tgcaagacat gggtcgcatg
1441 tttgggggct ggcacctgtt ccgacacatt gaaacccgct ttcagctcct tgccactaag
1501 aatgagggat ccttcagccc cgtggcgagt cttctctccc agggagagta cctcacgcgt
1561 cgggacgatg ttaagtacag cagcgatcac cagaaccggt ggcaaaaagg cggacaaccg
1621 atgacggggg gcattgctta tgcgaccggg aaaatgagac ccgacgagca acagtaccct
1681 gctatgcccc cagacccccc gatcatcacc gctactacag cgcaaggcac gcaagtccgc
1741 tgcatgaata gcacgcaagc ttggtggtca tgggacacat atatgagctt tgcaacactc
1801 acagcactcg gtgcacaatg gtcttttcct ccagggcaac gttcagtttc tagacggtcc
1861 ttcaaccacc acaaggcgag aggagccggg gaccccaagg gccagagatg gcacacgctg
1921 gtgccgctcg gcacggagac catcaccgac agctacatgt cagcacccgc atcagagctg
1981 gacactaatt tctttacgct ttacgtagcg caaggcacaa ataagtcgca acagtacaag
2041 ttcggcacag ctacatacgc gctaaaggag ccggtaatga agagcgatgc atgggcagtg
2101 gtacgcgtcc agtcggtctg gcagctgggt aacaggcaga ggccataccc atgggacgtc
2161 aactgggcga acagcaccat gtactggggg acgcagccct gaaaaggggg gggggctaaa
2221 gccccccccc cttaaacccc cccctggggg ggattccccc ccagaccccc cctttatata
2281 gcactcaata aacgcagaaa atagatttat cgcactatc
//
