LOCUS NC_001866 3392 bp RNA linear VRL 13-AUG-2018
DEFINITION Avian myelocytomatosis virus, complete genome.
ACCESSION NC_001866
VERSION NC_001866.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Avian myelocytomatosis virus
ORGANISM Avian myelocytomatosis virus
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus.
REFERENCE 1 (bases 1 to 3392)
AUTHORS Petropoulos,C.J.
TITLE Appendix 2: Retroviral taxonomy, protein structure, sequences, and
genetic maps
JOURNAL (in) Coffin,J.M. (Ed.);
RETROVIRUSES: 757;
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York,
NY, USA (1997)
REFERENCE 2 (bases 1 to 3392)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3392)
AUTHORS Chappey,C.
TITLE Direct Submission
JOURNAL Submitted (12-NOV-1997) NIH, NLM, Rockville Pike, Bethesda, MD
20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AF033809.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3392
/organism="Avian myelocytomatosis virus"
/mol_type="genomic RNA"
/db_xref="taxon:11867"
gene 22..3391
/locus_tag="Amvgp1"
/db_xref="GeneID:1491913"
mRNA 22..3391
/locus_tag="Amvgp1"
/product="p110"
/db_xref="GeneID:1491913"
5'UTR 22..102
/locus_tag="Amvgp1"
CDS 317..2944
/locus_tag="Amvgp1"
/codon_start=1
/product="p110"
/protein_id="NP_045935.1"
/db_xref="GeneID:1491913"
/translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSD
LYSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGG
GRVSPPGPECIEKPATERRIDKGEEVGETTVQRDAKMAPEETATPKTVGTSCYHCGTA
IGCNCATASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGHAGQAPGPA
LTDWARVGEELASTGPPVVAMPVVINTEGPAWTPLEPKLITRLADTVRTKGLRSPITM
AEVEALMSSRLLPHDVTNLMRVILGPAPYALWMDAWGVQLQTVIAAATRDPRHPANGQ
GRGERTNLDRLKGLADGMVGNPQGQAALLRPGELVAITASALQAFREVARLAEPAGPW
ADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPST
VHGQAAAAAMPLSASLPSKNYDYDYDSVQPYFYFEEEEENFYLAAQQRGSELQPPAPS
EDIWKKFELLPMPPLSPSRRSSLAAASCFPSTADQLEMVTELLGGDMVNQSFICDPDD
ESFVKSIIIQDCMWSGFSAAAKLEKVVSEKLATYQASRQEGGPAAASRPGPPPSGPPP
PPAGPAASAGLYLHDLGAAAADCIDPSVVFPYPLSERAPRAAPPGANPAALLGVDTPP
TTSSDSEEEQEEDEEIDVVTLAEANESESSTESSTEASEEHCKPHHSPLVLKRCHVNI
HQHNYAAPPSTKVEYPAAKRLKLDSGRVLKQISNNRKCSSPRTLDSEENDKRRTHNVL
ERQRRNELKLRFFALRDQIPEVANNEKAPKVVILKKATEYVLSLQSDEHKLIAEKEQL
RRRREQLKHNLEQLRNSRA"
mat_peptide 317..784
/locus_tag="Amvgp1"
/product="p19 MA"
/protein_id="NP_955599.1"
misc_feature 320..577
/locus_tag="Amvgp1"
/note="Retroviral M domain; Region: Retro_M; pfam02813"
/db_xref="CDD:280904"
mat_peptide 848..1036
/locus_tag="Amvgp1"
/product="p10"
/protein_id="NP_955600.1"
mat_peptide 1034..1669
/locus_tag="Amvgp1"
/product="CA"
/protein_id="NP_955601.1"
misc_feature 1061..1474
/locus_tag="Amvgp1"
/note="gag gene protein p24 (core nucleocapsid protein);
Region: Gag_p24; pfam00607"
/db_xref="CDD:425774"
misc_feature 1490..1654
/locus_tag="Amvgp1"
/note="Gag protein p24 C-terminal domain; Region:
Gag_p24_C; pfam19317"
/db_xref="CDD:437149"
mat_peptide 1667..2941
/locus_tag="Amvgp1"
/product="MYC"
/protein_id="NP_955602.1"
misc_feature 1697..2659
/locus_tag="Amvgp1"
/note="Myc amino-terminal region; Region: Myc_N;
pfam01056"
/db_xref="CDD:426019"
misc_feature 2675..2926
/locus_tag="Amvgp1"
/note="basic Helix-Loop-Helix-zipper (bHLHzip) domain
found in c-Myc and similar proteins; Region:
bHLHzip_c-Myc; cd11458"
/db_xref="CDD:381464"
misc_feature order(2675..2677,2687..2692,2699..2704,2708..2716,
2720..2725,2735..2737,2795..2800)
/locus_tag="Amvgp1"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:381464"
misc_feature order(2732..2734,2741..2746,2750..2755,2762..2764,
2801..2803,2810..2815,2822..2824,2828..2836,2840..2845,
2849..2854,2861..2863,2870..2875,2882..2887,2891..2899,
2903..2908,2912..2926)
/locus_tag="Amvgp1"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:381464"
misc_feature order(2732..2734,2741..2746,2750..2755,2762..2764,
2801..2803,2810..2815,2822..2824,2828..2836,2840..2845,
2849..2854,2861..2863,2870..2875,2882..2887,2891..2896,
2903..2905,2912..2917,2924..2926)
/locus_tag="Amvgp1"
/note="dimer interface [polypeptide binding]; other site"
/db_xref="CDD:381464"
3'UTR 3391
/locus_tag="Amvgp1"
ORIGIN
1 ctaacgatta cgcgaacctg aatgaagcag aaggcttcat ttggtgaccc cgacgtgatc
61 gttagggaat agtggtcggc cacaggcgtg gcgatcctgc cctcatccgt ctcgcttaac
121 ggagcaggac gatgacccta gtagaggggg ctgcggctta ggagggcaga agctgagtga
181 cgtcggaggg agctccacgg ccggggggca agataaccta ccgagaactc agagagtcgt
241 tggaagacgg gaaggaagcc cgacgactga gcagtccacc ccaggcgttg attctggtcg
301 cccggtggat caaagcatgg aagccgtcat aaaggtgatt tcgtccgcgt gtaaaaccta
361 ttgcggaaaa acctctcctt ctaagaagga aataggggcc atgttgtccc tcttacaaaa
421 ggaagggttg cttatgtctc cctcagactt atattccccg gggtcatggg atcccattac
481 cgcggcactc acccagcggg caatggtact tgggaaatcg ggagagttaa aaacctgggg
541 attggttttg ggggcattga aggcggctcg agaggaacag gttacatctg agcaagcaaa
601 gttttggttg ggattagggg gagggagggt ctctccccca ggtccggagt gcatcgagaa
661 accagcaacg gagcggcgaa tcgacaaggg ggaggaagtg ggagaaacaa ctgtgcagcg
721 agatgcgaag atggcgccgg aggaaactgc cacacctaaa accgttggca catcctgcta
781 tcattgcgga acagctattg gctgtaattg cgccacagcc tcggcccctc ctcctcctta
841 tgtggggagt ggtttgtatc cttccctggc gggggtggga gagcagcagg gccagggggg
901 tgacacacct cggggggcgg aacagccaag ggcggagcca gggcacgcgg gtcaggctcc
961 tgggccggcc ctgactgact gggcaagggt cggggaggag cttgcgagta ctggtccgcc
1021 cgtggtggcc atgcctgtag tgattaacac agagggaccc gcctggaccc ctctggagcc
1081 aaaattgatc acaagactgg ctgatacggt caggaccaag ggcttacgat ccccgattac
1141 tatggcagaa gtggaagcgc ttatgtcctc ccggctgctg ccgcatgatg tcacgaatct
1201 aatgagagtt attttaggac ctgccccata tgccttatgg atggacgctt ggggagtcca
1261 actccagacg gttatagcgg cggccactcg cgacccccga cacccagcga acggtcaagg
1321 acggggggaa cggactaact tggatcgctt aaagggctta gctgatggga tggtgggcaa
1381 cccacagggt caggccgcat tattaagacc gggggaattg gttgctatta cggcgtcggc
1441 tctccaggcg tttagagaag ttgcccggct ggcggaacct gcaggtccat gggcggacat
1501 cacgcaggga ccatctgagt cctttgttga tttcgccaat cggcttataa aggcggttga
1561 ggggtcagac ctcccgcctt ccgcgcgggc tccggtgatc attgactgct ttaggcagaa
1621 gtcacagcca gatatccagc agcttatacg ggcagcaccc tccacagtgc acggccaggc
1681 agcagccgcc gcgatgccgc tcagcgccag cctccccagc aagaactacg attacgacta
1741 cgactcggtg cagccctact tctacttcga ggaggaggag gagaacttct acctggcggc
1801 gcagcagcgg ggcagcgagc tgcagcctcc cgccccgtcc gaggacatct ggaagaagtt
1861 tgagctcctg cccatgccgc ccctctcgcc cagccgccgc tccagcctgg ccgccgcctc
1921 ctgcttccct tccaccgccg accagctgga gatggtgacg gagctgctcg ggggggacat
1981 ggtcaaccag agcttcatct gcgacccgga cgacgaatcc ttcgtcaaat ccatcatcat
2041 ccaggactgc atgtggagcg gcttctccgc cgccgccaag ctggagaagg tggtgtcgga
2101 gaagctcgcc acctaccaag cctcccgcca ggaggggggc cccgccgccg cctcccgacc
2161 cggcccgccg ccctcggggc cgccgcctcc tcccgccggc cccgccgcct cggccggcct
2221 ctacctgcac gacctgggag ccgcggccgc cgactgcatc gacccctcgg tggtcttccc
2281 ctacccgctc agcgagcgcg ccccgcgggc cgccccgccc ggcgccaacc ccgcggctct
2341 gctgggggtc gacacgccgc ccacgaccag cagcgactcg gaagaagaac aagaagaaga
2401 tgaggaaatc gatgtcgtta cattagctga agcgaacgag tctgaatcca gcacagagtc
2461 cagcacagaa gcatcagagg agcactgtaa gccccaccac agtccgctgg tcctcaagcg
2521 gtgtcacgtc aacatccacc aacacaacta cgctgctcct ccctccacca aggtggaata
2581 cccagccgcc aagaggctaa agttggacag tggcagggtc ctcaaacaga tcagcaacaa
2641 ccgaaaatgc tccagtcccc gcacgttaga ctcagaggag aacgacaaga ggcgaacgca
2701 caacgtcttg gagcgccagc gaaggaatga gctgaagctg cgtttctttg ccctgcgtga
2761 ccagataccc gaggtggcca acaacgagaa ggcgcccaag gttgtcatcc tgaaaaaagc
2821 cacggagtac gttctgtctc tccaatcgga cgagcacaaa ctgatcgcag agaaagagca
2881 gttgaggcgg aggagagaac agttgaaaca caaccttgag cagctaagga actctcgtgc
2941 ataggaactc ttggacatca cttagaatac cccaaactag actgaaacta tgataaaata
3001 ttagtgtttc taatatcact catgaactac atcagtccat tgagtatgga actattgcaa
3061 ctgcatgctg tgcgacttaa cttgagacta cacaaccttg gccgaatctc cgaacggttt
3121 ggccagaacc tcaaaactgc ctcataattg atactttggg cataagggat gatgggacat
3181 tcttcatgct tggggatgaa ctcttcaact tttttctttt aaaattttgt atttaaggca
3241 ttcctggtgg ccctgataac agcacaaccc tcacctatcg gaaggtttcg tgcttgttgt
3301 taaagctgaa cgtttctctt tagacgagcc atcagaacta caactattag gttcccagtc
3361 tctccccatt ataactaata ttactcggat cc
//
