LOCUS       NC_003414               1360 bp ss-DNA     circular VRL 13-AUG-2018
DEFINITION  Ageratum yellow vein Singapore alphasatellite-[Singapore;1998],
            complete genome.
ACCESSION   NC_003414
VERSION     NC_003414.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq; Rep gene; replication-associated protein.
SOURCE      Ageratum yellow vein Singapore alphasatellite
  ORGANISM  Ageratum yellow vein Singapore alphasatellite
            Viruses; Alphasatellitidae; Geminialphasatellitinae;
            Ageyesisatellite.
REFERENCE   1  (bases 1 to 1360)
  AUTHORS   Saunders,K., Bedford,I.D. and Stanley,J.
  TITLE     Adaptation from whitefly to leafhopper transmission of an
            autonomously replicating nanovirus-like DNA component associated
            with ageratum yellow vein disease
  JOURNAL   J. Gen. Virol. 83 (Pt 4), 907-913 (2002)
   PUBMED   11907341
REFERENCE   2  (bases 1 to 1360)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (05-MAY-2009) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1360)
  AUTHORS   Stanley,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2001) Stanley J., Department of Disease and
            Stress Biology, John Innes Centre, Norwich Research Park, Colney,
            Norwich, NR4 7UH, UNITED KINGDOM
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ416153.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1360
                     /organism="Ageratum yellow vein Singapore alphasatellite"
                     /mol_type="genomic DNA"
                     /host="Ageratum conyzoides"
                     /db_xref="taxon:915293"
                     /clone="pGEM-AYVV2"
                     /lab_host="Nicotiana benthamiana"
                     /country="Singapore"
                     /note="Nanovirus-like component (DNA 2) associated with
                     ageratum yellow vein disease"
     gene            57..944
                     /gene="Rep"
                     /locus_tag="AYVVnDgp1"
                     /db_xref="GeneID:935138"
     CDS             57..944
                     /gene="Rep"
                     /locus_tag="AYVVnDgp1"
                     /function="initiation of rolling circle replication"
                     /codon_start=1
                     /product="replication-associated protein"
                     /protein_id="NP_579867.1"
                     /db_xref="GeneID:935138"
                     /translation="MAPQGKRWCFTSFDSDPPFLSLPDGCSYLVYQREKCPQTDKEHW
                     QGFITFVGQKRLNTVKSLAGGNNWHWEVARGKNTECRAYCTKEDTRVAPPVEFGQFTE
                     LGSNKRKTMELFQEDPEELKIADPQKYRRCLAIITNQRFVDVALPTFDRQWQLEVGEL
                     LEQPADDRTIIWVYGSQGNEGKTTYVKGLIQKGWFNSRGGKSDDIMFQYIVHGGHAVF
                     DFPRDKEDYVNYNVLEAIKDRTCISNKYEPLSINSPSLVHVLVMANFMPQLEDEFDDK
                     GRVVKKQMLSVDRIKLIEC"
     misc_feature    75..317
                     /gene="Rep"
                     /locus_tag="AYVVnDgp1"
                     /note="Putative viral replication protein; Region:
                     Viral_Rep; pfam02407"
                     /db_xref="CDD:280553"
     misc_feature    567..848
                     /gene="Rep"
                     /locus_tag="AYVVnDgp1"
                     /note="RNA helicase; Region: RNA_helicase; pfam00910"
                     /db_xref="CDD:425942"
ORIGIN      
        1 acccaacctc tccacactca cctctccaca cctccgtaca ataaaaatcc atataaatgg
       61 ccccgcaggg taaacgctgg tgtttcactt cttttgactc tgatcctccg tttctctcac
      121 ttcccgatgg atgtagttac ttggtttacc aaagagaaaa atgtcctcag acagacaaag
      181 aacactggca gggtttcatc accttcgtcg gacagaagag acttaataca gttaagtctc
      241 ttgcaggagg aaacaattgg cactgggagg tcgctcgagg aaaaaataca gaatgcagag
      301 catactgtac aaaagaggat actcgagttg ctccacccgt cgaattcggt cagttcacag
      361 aacttgggtc gaataagagg aagacgatgg aactatttca ggaagaccca gaagaactca
      421 aaattgccga ccctcagaaa tatcgtcgat gcctggcaat tatcacaaat caaagattcg
      481 ttgatgttgc attgcctact ttcgatcgac aatggcagtt ggaggtcggg gaacttcttg
      541 agcagccagc agatgataga actatcattt gggtgtatgg aagccagggc aatgaaggaa
      601 agactacgta tgtgaaggga ctcatacaga agggatggtt caattcacgt ggtggcaagt
      661 ctgatgatat aatgttccag tacattgttc atggaggtca cgctgttttt gattttccta
      721 gagataaaga ggattatgtt aattataatg ttttagaagc tattaaggat cgtacatgta
      781 tttctaataa gtacgaacct cttagcatta attctccttc tcttgttcat gtcttagtta
      841 tggcgaactt catgcctcaa cttgaggatg agttcgatga taagggtaga gttgtaaaaa
      901 aacaaatgtt atccgtagac cggattaaat taatagaatg ttaattgtta attgttttat
      961 ttattattaa gaaagctata tacataaaaa gaaagaagaa agaaagaaga agaacacccc
     1021 cacaaaacac acacaaaaca cacagacaca tccaatcaag aaaaaaggaa gcgcagcgta
     1081 atgtctttaa tttgaaaaaa ttaatggaaa aaaagaaaaa gaaaaaagaa aaaaaaagga
     1141 gacatcagtg cataacgtca ctatcaaatg ttccccattt atcactataa atacgttagt
     1201 ccaaaaccgg gtgcgcaccc ggttttacaa taccacttac cagagtggta ttgtgtttct
     1261 cggtcctgtt ttaacaacag gatcgatgac gtggaattgc acacattctc tctctgttga
     1321 caggtttagc ctataataag ggagaggttg ggctagtatt
//