LOCUS NC_003451 3373 bp RNA linear VRL 13-AUG-2018
DEFINITION American plum line pattern virus RNA1, complete genome.
ACCESSION NC_003451
VERSION NC_003451.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE American plum line pattern virus
ORGANISM American plum line pattern virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Martellivirales; Bromoviridae; Ilarvirus.
REFERENCE 1 (bases 1 to 3373)
AUTHORS Scott,S.W. and Zimmerman,M.T.
TITLE American plum line pattern virus is a distinct ilarvirus
JOURNAL Acta Hortic. 550, 221-225 (2001)
REFERENCE 2 (bases 1 to 3373)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-MAR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3373)
AUTHORS Zimmerman,M.T. and Scott,S.W.
TITLE Direct Submission
JOURNAL Submitted (16-FEB-2000) Plant Pathology and Physiology, Clemson
University, P.O. Box 340377, Clemson, SC 29634-0377, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AF235033.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..3373
/organism="American plum line pattern virus"
/mol_type="genomic RNA"
/db_xref="taxon:134632"
/segment="RNA 1"
gene 22..3210
/locus_tag="APLPVsRNA1gp1"
/db_xref="GeneID:984277"
CDS 22..3210
/locus_tag="APLPVsRNA1gp1"
/codon_start=1
/product="putative viral replicase p1"
/protein_id="NP_602312.1"
/db_xref="GeneID:984277"
/translation="MTCDAQTTEISELLDAVLKARCADESSTVGKVFADYAAQKVRNS
LGDSKVRRPLTVSFQLTPDQQALLRHNFPGREIRFSSSAPSSHSFAAAHRILETDFLY
DCLSSEAPVIDLGGNFSTHLKNKRHNVHCCCPLLDYRDGARHTERIYSWDKYSKHNRG
YDRTLVLSEYVSRVYRSADYAMAVHSTSDIPLVELCSALRCHGVRKFVCTMMMTPEML
FQSSGYIPHFEVRWTVDKKADRIFFDFENAPNLGMTILHSDQLFPGELCRPGRSRLSC
GKTQDGGVVVIDITYVDGYYWGLSLEGGRSCAWFSRIRDKVLVNTVSDFDPYSNDVVR
KEVLMDREVLTRVVEAAFRQYKPTTAMETAVQSIAMLLSSSTNHVIVNGVTMIAGTPL
EIYEYVPVAVAVYKHVRHYYNMVSTIFDLINSEVQVKTSVPRFDSSAVPTVDMWGDAA
MIEGAMEEVEISPSFIGSLFREQLISESDYERVVRLPGVSLKRWWEEFRAKHLGTKRS
FLRIFSDPEFCIPFYDYVVANHGSFLQIFKQKDVEMGDLAKERKQSRELLRKSIREEE
ERKEAEERRLSKAVIRIAQWLEAHPNGKIPSGLGDIKDFLPVIHAKSEVNEGVKEGVV
LNPYAENITEAIEYLDSVFTIQRRTMDSIINHCEGGRVISPAVFAGFEDLRIFKPSSN
RWYAPSGKLPQAEEQYSFGYVVGGDRVTIHWAGGEFSVDTRKALSVYSAVFFDKSCVV
DTSGPIRESLRGALTRDTNVEITLIDGVAGCGKTTKIVKSADIDREGGCLILTSNRNS
AEELRSKVRGSQLVKSRVIRTVDSYLMAKNPPTADVVYFDECFLQHSGVILAAVTLAK
AKKLYAFGDTEQIPFISRNPLFRFKHRFLTSNRRIECLDTFRSPADATFLLGKYFYKK
KSQIKTTSRVQPSISVKPISVHDQIEVDKSAIYCCYIQAEKAELLSKPQFKNMEVATI
HEKQGESVDKVIFFRLSKTSTELTTGKHPVMGPCHALVALSRHKKEFVYYTRAATVDT
SDCLYKACMDVPETKELYEVFTPSERSSLVLD"
misc_feature 298..1176
/locus_tag="APLPVsRNA1gp1"
/note="Viral methyltransferase; Region: Vmethyltransf;
pfam01660"
/db_xref="CDD:396298"
misc_feature 2308..3090
/locus_tag="APLPVsRNA1gp1"
/note="Viral (Superfamily 1) RNA helicase; Region:
Viral_helicase1; pfam01443"
/db_xref="CDD:366646"
ORIGIN
1 gtctttttgt ccaaagttat tatgacttgt gatgcacaaa ctaccgaaat ttccgagctt
61 ttagatgcag ttctaaaagc tcgatgcgcc gacgaatcgt ctaccgtcgg taaggttttt
121 gctgattatg cagcgcaaaa agtccggaat tccttggggg attctaaggt taggagacct
181 ttgactgtct cgtttcagtt gacccccgac cagcaagctt tgttacggca caactttcct
241 ggtcgggaga ttcgattcag ttcttcggct ccttcgtccc acagctttgc agcagctcac
301 aggattctgg aaacagattt tttgtatgac tgtttgagca gtgaagcccc cgttattgat
361 ttggggggaa atttttcaac acatttgaaa aacaagcgac acaacgttca ttgttgttgt
421 cccttgcttg actatcgtga tggtgctaga cacaccgaac gaatatattc ttgggataaa
481 tattccaaac ataaccgggg atatgacaga accctggtat tgtcggaata cgtttcaaga
541 gtgtaccgta gtgctgatta tgctatggca gtacactcta cgtccgacat tccgttagtg
601 gaactttgtt ccgcattacg atgccatggt gttagaaaat tcgtttgcac catgatgatg
661 accccagaga tgttgttcca atcttcgggt tatatacctc actttgaagt gagatggacc
721 gtcgataaga aggcggatcg aattttcttc gattttgaaa atgcacccaa tttaggtatg
781 accattctcc actctgatca gttatttcca ggcgaattgt gtcgacctgg gagatcacgc
841 ttatcgtgtg gaaagaccca agatgggggc gttgtagtaa ttgacatcac gtatgtggat
901 ggttactact ggggtttgag tttggaagga ggtcgttcat gtgcatggtt ctctaggatt
961 agagataaag tgcttgtgaa cactgtttcc gactttgacc cttattctaa cgatgtggtt
1021 aggaaggagg tgttgatgga cagggaagtt ttaactaggg ttgtggaagc cgcttttagg
1081 cagtacaaac ctactacagc tatggagact gcagtgcagt ctatagctat gcttctgtcg
1141 tcttcgacca atcacgttat cgttaacgga gttacgatga ttgcgggtac tcctcttgaa
1201 atttatgagt atgtgcccgt tgccgtagct gtgtataagc atgttcgtca ctactacaat
1261 atggtgtcga cgatattcga cctgatcaat tctgaagttc aggttaagac tagtgttcct
1321 aggtttgatt catccgcggt accgactgtg gatatgtggg gtgatgctgc aatgatcgag
1381 ggagcgatgg aggaggtgga aatttcccct tcatttatcg gttccctttt ccgtgagcag
1441 ctcatctcag agtctgatta cgaacgcgtc gtcagattac caggcgtgag cctgaagcga
1501 tggtgggagg aattcagagc gaaacatctt ggaacgaaac gctctttcct ccgcattttt
1561 tcggatcccg aattctgtat acccttctat gattatgtcg tggctaatca tggaagtttc
1621 ttgcaaatct tcaaacagaa ggatgttgaa atgggagatt tagcaaagga aaggaaacag
1681 agtagggagt tactccgtaa atctatccgt gaggaggagg agcggaagga ggccgaggaa
1741 cggaggttga gtaaggccgt gatccgtatc gcgcaatggt tagaagcaca tccaaatggg
1801 aaaattccta gtggattggg cgatattaag gattttcttc ccgttattca tgcgaaatcg
1861 gaagttaatg agggggtgaa ggaaggtgtc gtcctaaacc cctatgcaga aaatataacg
1921 gaagccatcg aatacttgga cagtgttttt actatccaaa ggcggacgat ggactctatc
1981 ataaaccatt gtgaaggtgg tagagtcatt tcaccagcgg tgtttgcagg gtttgaagat
2041 ctgcgtatct tcaaaccctc cagtaatcga tggtatgctc cttctggaaa gttgccgcaa
2101 gccgaggaac agtatagttt cggttatgtg gttggtggtg atagagtcac cattcactgg
2161 gctggtggtg agttctccgt agacacgcgg aaagcgttga gtgtgtactc agcggtgttt
2221 ttcgacaaat catgtgttgt ggacacatca ggtcccattc gagagtcttt gcgaggtgct
2281 ttgactcgag acacgaacgt cgaaattact ctcatcgatg gtgtggcagg ttgtgggaaa
2341 acaacaaaaa ttgtgaaatc tgccgacatt gacagagaag ggggttgttt aatcctgacc
2401 tctaatagga attcggctga ggagctaaga tccaaggttc gtggttctca attagtgaaa
2461 tcgcgagtga ttcgcaccgt tgattcctac ttgatggcga agaatccacc tactgcggat
2521 gtggtatact tcgatgagtg ttttttacaa cactccggag taattctcgc ggcggttacg
2581 ttggcgaaag caaagaaact ttatgctttt ggtgatactg aacagattcc gtttatttct
2641 cggaatcctt tgttcagatt taagcatcgg tttttgacgt ccaaccgaag aatagagtgt
2701 ctggatacat tcagatctcc ggcagatgcg acgtttctat tggggaaata tttctacaag
2761 aagaaatccc aaataaagac tacgtctagg gttcagccga gtatatcggt taaaccgatt
2821 tccgtccacg atcaaattga ggtggacaag tcagcgattt attgctgtta cattcaagcc
2881 gagaaggcag aacttttgag taagccccag ttcaagaaca tggaggttgc tactatccac
2941 gagaaacaag gagaatctgt ggataaagtt attttctttc gtttaagtaa aacttcgacg
3001 gaattaacca cgggaaaaca tccagtgatg ggtccttgtc atgctcttgt tgcgttgtca
3061 cgccacaaga aagaattcgt gtattataca cgagcggcga ctgtcgatac aagtgattgt
3121 ttatacaaag cttgtatgga cgtacctgaa actaaggaac tctatgaggt tttcacccct
3181 tctgagagat ccagtttggt tttggattga tgttactagt cgtttagact aatgaaaatc
3241 ccaattgggt cattgacttt gtcaatgagt taactacgat gtcggcccta ggacatctat
3301 cgagttaacg acgatcgctt tgcgattatg cttcattttt cctttcggaa aaatgaaatg
3361 acccttaggg gcc
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